Wall clock time and date at job start Sun Mar 7 2021 09:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86302 * 109.47286 * 2 1 4 4 C 1.50702 * 109.47572 * 239.99663 * 2 1 3 5 5 C 1.38589 * 120.32390 * 300.00546 * 4 2 1 6 6 C 1.38630 * 118.48624 * 179.97438 * 5 4 2 7 7 C 1.39272 * 119.06187 * 359.97438 * 6 5 4 8 8 C 1.48162 * 119.72076 * 180.02562 * 7 6 5 9 9 O 1.21518 * 120.00114 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00041 * 179.97438 * 8 7 6 11 11 C 1.46496 * 119.99951 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.47459 * 325.00158 * 11 10 8 13 13 C 1.52997 * 109.47194 * 85.00164 * 11 10 8 14 14 C 1.53002 * 109.47415 * 59.99942 * 13 11 10 15 15 C 1.52996 * 109.46972 * 59.99860 * 14 13 11 16 16 H 1.09000 * 109.47054 * 60.00300 * 15 14 13 17 17 N 1.46500 * 109.46993 * 180.02562 * 15 14 13 18 18 O 1.21800 * 119.99770 * 60.00173 * 17 15 14 19 19 O 1.21798 * 119.99919 * 239.99917 * 17 15 14 20 20 C 1.52997 * 109.47165 * 300.00293 * 15 14 13 21 21 C 1.52999 * 109.47592 * 60.00300 * 20 15 14 22 22 N 1.32745 * 120.55439 * 0.27131 * 7 6 5 23 23 C 1.31494 * 121.64149 * 359.44078 * 22 7 6 24 24 H 0.96696 * 113.99834 * 299.99677 * 1 2 3 25 25 H 1.09008 * 109.47286 * 119.99656 * 2 1 3 26 26 H 1.48497 * 110.00213 * 178.67967 * 3 2 1 27 27 H 1.48501 * 109.99770 * 299.99757 * 3 2 1 28 28 H 1.08002 * 120.75262 * 359.94699 * 5 4 2 29 29 H 1.07999 * 120.46632 * 180.02562 * 6 5 4 30 30 H 0.96995 * 119.99605 * 0.02562 * 10 8 7 31 31 H 1.09000 * 109.47140 * 179.97438 * 13 11 10 32 32 H 1.09001 * 109.47230 * 299.99110 * 13 11 10 33 33 H 1.08992 * 109.46974 * 180.02562 * 14 13 11 34 34 H 1.08996 * 109.46550 * 300.00288 * 14 13 11 35 35 H 1.09000 * 109.47140 * 299.99954 * 20 15 14 36 36 H 1.09002 * 109.47045 * 180.02562 * 20 15 14 37 37 H 1.08993 * 109.47839 * 180.02562 * 21 20 15 38 38 H 1.09000 * 109.47160 * 59.99666 * 21 20 15 39 39 H 1.08003 * 119.54606 * 180.30573 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9315 -0.7105 -1.2304 5 6 1.6008 -2.0372 -1.4564 6 6 2.0832 -2.6532 -2.6007 7 6 2.8787 -1.9213 -3.4789 8 6 3.4017 -2.5650 -4.7067 9 8 3.1357 -3.7267 -4.9441 10 7 4.1715 -1.8618 -5.5607 11 6 4.6882 -2.4981 -6.7749 12 1 4.9141 -3.5444 -6.5689 13 6 3.6365 -2.4121 -7.8828 14 6 3.3193 -0.9436 -8.1721 15 6 4.5934 -0.2256 -8.6215 16 1 4.9778 -0.6991 -9.5249 17 7 4.2898 1.1807 -8.8979 18 8 3.8466 1.8930 -8.0149 19 8 4.4807 1.6376 -10.0107 20 6 5.6451 -0.3116 -7.5136 21 6 5.9623 -1.7801 -7.2243 22 7 3.1762 -0.6532 -3.2228 23 6 2.7275 -0.0430 -2.1479 24 1 -0.3933 0.4416 0.7651 25 1 1.7924 -0.5138 0.8901 26 1 3.5346 1.7703 0.0322 27 1 1.5616 2.4678 -1.2085 28 1 0.9816 -2.5789 -0.7566 29 1 1.8449 -3.6859 -2.8087 30 1 4.3835 -0.9344 -5.3713 31 1 4.0211 -2.8852 -8.7863 32 1 2.7288 -2.9237 -7.5626 33 1 2.5698 -0.8824 -8.9610 34 1 2.9349 -0.4702 -7.2686 35 1 5.2607 0.1618 -6.6102 36 1 6.5526 0.2003 -7.8336 37 1 6.7112 -1.8415 -6.4348 38 1 6.3468 -2.2536 -8.1277 39 1 2.9866 0.9912 -1.9754 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16623254_13287726.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:42:19 Heat of formation + Delta-G solvation = -34.387951 kcal Electronic energy + Delta-G solvation = -25671.700928 eV Core-core repulsion = 21777.112596 eV Total energy + Delta-G solvation = -3894.588332 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 308.125 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.48105 -42.08787 -40.93072 -39.25402 -37.81027 -37.60052 -35.36262 -34.04444 -33.21051 -32.36164 -31.84456 -28.12276 -27.10269 -25.19974 -24.31993 -24.09715 -23.31003 -22.30217 -20.76378 -19.93403 -19.58965 -19.35590 -18.59339 -18.35691 -18.18289 -17.05809 -16.94397 -16.72384 -16.54132 -16.03134 -15.63999 -15.34932 -15.19852 -14.74757 -14.65827 -14.45238 -14.08892 -13.99924 -13.97418 -13.76058 -13.68542 -12.76418 -12.68467 -12.58160 -12.55851 -12.30364 -12.25261 -12.13292 -11.85126 -11.69968 -11.64522 -11.18760 -10.94118 -10.63672 -10.35068 -10.15503 -4.97678 -0.73400 -0.72129 -0.09129 0.61236 1.22927 1.39863 1.63801 1.81627 1.93864 2.49562 2.75283 2.89391 2.94475 3.21836 3.38344 3.41786 3.48953 3.56961 3.64876 3.70097 3.82082 3.84419 3.86954 4.04394 4.11730 4.22435 4.28349 4.29705 4.46424 4.57103 4.62739 4.72142 4.76594 4.79302 4.86280 4.88366 4.98291 5.15024 5.21991 5.26733 6.08802 6.31367 6.41259 6.86029 6.88265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.562 6.562 2 C -0.074 4.074 3 Si 0.769 3.231 4 C -0.108 4.108 5 C -0.049 4.049 6 C -0.110 4.110 7 C 0.055 3.945 8 C 0.575 3.425 9 O -0.555 6.555 10 N -0.700 5.700 11 C 0.134 3.866 12 H 0.101 0.899 13 C -0.118 4.118 14 C -0.119 4.119 15 C 0.021 3.979 16 H 0.163 0.837 17 N -0.012 5.012 18 O -0.187 6.187 19 O -0.183 6.183 20 C -0.125 4.125 21 C -0.110 4.110 22 N -0.462 5.462 23 C 0.081 3.919 24 H 0.409 0.591 25 H 0.111 0.889 26 H -0.281 1.281 27 H -0.296 1.296 28 H 0.172 0.828 29 H 0.159 0.841 30 H 0.413 0.587 31 H 0.111 0.889 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.118 0.882 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.323 -1.717 6.320 6.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.372 6.372 2 C -0.184 4.184 3 Si 0.675 3.325 4 C -0.111 4.111 5 C -0.075 4.075 6 C -0.131 4.131 7 C -0.082 4.082 8 C 0.360 3.640 9 O -0.433 6.433 10 N -0.352 5.352 11 C 0.030 3.970 12 H 0.119 0.881 13 C -0.157 4.157 14 C -0.158 4.158 15 C -0.075 4.075 16 H 0.180 0.820 17 N 0.506 4.494 18 O -0.405 6.405 19 O -0.402 6.402 20 C -0.163 4.163 21 C -0.148 4.148 22 N -0.173 5.173 23 C -0.079 4.079 24 H 0.261 0.739 25 H 0.129 0.871 26 H -0.208 1.208 27 H -0.223 1.223 28 H 0.190 0.810 29 H 0.177 0.823 30 H 0.252 0.748 31 H 0.130 0.870 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.114 0.886 37 H 0.118 0.882 38 H 0.136 0.864 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 2.425 -2.578 4.683 5.870 hybrid contribution -0.618 0.085 0.254 0.674 sum 1.806 -2.493 4.936 5.818 Atomic orbital electron populations 1.86427 1.16510 1.82515 1.51797 1.24711 0.86458 1.10916 0.96364 0.94041 0.77789 0.75391 0.85323 1.21032 0.97313 0.95617 0.97101 1.21824 0.95751 0.93565 0.96337 1.22393 0.94860 1.02358 0.93461 1.21258 0.99323 0.91000 0.96659 1.17917 0.78471 0.85278 0.82354 1.90791 1.59503 1.17074 1.75940 1.46030 1.50435 1.16382 1.22365 1.21283 0.93526 0.99031 0.83120 0.88073 1.21897 1.00450 0.93184 1.00180 1.21836 0.93747 0.97273 1.02924 1.24647 1.01168 0.75686 1.06031 0.81992 1.45469 0.97207 1.06998 0.99683 1.94561 1.45885 1.60455 1.39598 1.94567 1.56007 1.79804 1.09782 1.21961 0.97262 1.00732 0.96376 1.21820 0.96318 0.91589 1.05044 1.67433 1.20937 1.09348 1.19630 1.22645 0.95805 0.99603 0.89840 0.73901 0.87122 1.20774 1.22348 0.81012 0.82313 0.74846 0.87037 0.90969 0.90038 0.90787 0.90138 0.88567 0.88189 0.86373 0.82544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 2.50 12.75 -148.98 -1.90 0.60 16 2 C -0.07 0.36 2.82 71.24 0.20 0.56 16 3 Si 0.77 -3.91 29.82 68.60 2.05 -1.86 16 4 C -0.11 -0.17 5.44 -19.69 -0.11 -0.28 16 5 C -0.05 -0.04 9.76 22.45 0.22 0.18 16 6 C -0.11 -0.41 9.63 22.61 0.22 -0.19 16 7 C 0.06 0.35 6.75 41.89 0.28 0.63 16 8 C 0.57 3.59 7.78 86.88 0.68 4.26 16 9 O -0.56 -6.04 15.99 -3.77 -0.06 -6.10 16 10 N -0.70 -0.35 4.22 -445.10 -1.88 -2.23 16 11 C 0.13 -0.57 2.78 44.99 0.13 -0.44 16 12 H 0.10 -0.26 7.58 -2.39 -0.02 -0.28 16 13 C -0.12 0.54 5.60 30.59 0.17 0.71 16 14 C -0.12 0.27 5.15 30.59 0.16 0.42 16 15 C 0.02 -0.06 2.88 44.99 0.13 0.07 16 16 H 0.16 -1.26 8.09 -2.39 -0.02 -1.28 16 17 N -0.01 -0.08 3.82 -169.40 -0.65 -0.72 16 18 O -0.19 -1.98 18.50 18.89 0.35 -1.63 16 19 O -0.18 -1.80 19.21 18.89 0.36 -1.44 16 20 C -0.12 0.73 5.13 30.59 0.16 0.89 16 21 C -0.11 1.02 5.61 30.60 0.17 1.20 16 22 N -0.46 -3.03 9.54 -184.91 -1.76 -4.80 16 23 C 0.08 0.38 9.84 84.83 0.83 1.22 16 24 H 0.41 -6.05 8.74 -74.06 -0.65 -6.70 16 25 H 0.11 -1.11 7.96 -2.38 -0.02 -1.13 16 26 H -0.28 0.01 7.11 99.48 0.71 0.72 16 27 H -0.30 -0.99 7.11 99.48 0.71 -0.29 16 28 H 0.17 -0.73 8.06 -2.91 -0.02 -0.75 16 29 H 0.16 0.33 7.64 -2.91 -0.02 0.31 16 30 H 0.41 -0.04 6.19 -92.71 -0.57 -0.62 16 31 H 0.11 -1.05 8.14 -2.39 -0.02 -1.07 16 32 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 33 H 0.08 -0.13 8.14 -2.39 -0.02 -0.15 16 34 H 0.07 0.13 7.49 -2.39 -0.02 0.11 16 35 H 0.08 -0.26 6.39 -2.39 -0.02 -0.28 16 36 H 0.10 -0.64 8.14 -2.39 -0.02 -0.66 16 37 H 0.10 -0.99 8.14 -2.39 -0.02 -1.01 16 38 H 0.12 -1.61 8.14 -2.39 -0.02 -1.62 16 39 H 0.16 0.50 4.89 -2.91 -0.01 0.48 16 Total: 0.00 -22.85 329.12 -0.33 -23.18 By element: Atomic # 1 Polarization: -14.16 SS G_CDS: -0.07 Total: -14.24 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: 3.24 Total: 9.23 kcal Atomic # 7 Polarization: -3.46 SS G_CDS: -4.29 Total: -7.75 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: -1.25 Total: -8.57 kcal Atomic # 14 Polarization: -3.91 SS G_CDS: 2.05 Total: -1.86 kcal Total: -22.85 -0.33 -23.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16623254_13287726.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.205 kcal (2) G-P(sol) polarization free energy of solvation -22.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds