Wall clock time and date at job start Sun Mar 7 2021 09:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86303 * 109.47152 * 2 1 4 4 C 1.50695 * 109.47542 * 239.99739 * 2 1 3 5 5 C 1.33739 * 125.12274 * 300.00164 * 4 2 1 6 6 C 1.37799 * 115.08302 * 179.97438 * 5 4 2 7 7 C 1.34975 * 114.70109 * 0.02562 * 6 5 4 8 8 C 1.47566 * 125.27545 * 179.97438 * 7 6 5 9 9 C 1.39822 * 119.99558 * 359.72308 * 8 7 6 10 10 C 1.36568 * 119.99596 * 179.75760 * 9 8 7 11 11 C 1.39831 * 120.00010 * 0.53929 * 10 9 8 12 12 C 1.47555 * 120.00215 * 179.73521 * 11 10 9 13 13 O 1.21588 * 120.00008 * 179.97438 * 12 11 10 14 14 N 1.34777 * 119.99814 * 359.97438 * 12 11 10 15 15 C 1.46505 * 119.99981 * 179.97438 * 14 12 11 16 16 H 1.08995 * 109.46733 * 325.00592 * 15 14 12 17 17 C 1.53004 * 109.46935 * 84.99922 * 15 14 12 18 18 C 1.53002 * 109.46896 * 60.00126 * 17 15 14 19 19 C 1.53003 * 109.46984 * 59.99909 * 18 17 15 20 20 H 1.09001 * 109.47162 * 60.00101 * 19 18 17 21 21 N 1.46503 * 109.47118 * 179.97438 * 19 18 17 22 22 O 1.21802 * 119.99842 * 240.00474 * 21 19 18 23 23 O 1.21800 * 119.99989 * 59.99557 * 21 19 18 24 24 C 1.52995 * 109.47341 * 299.99664 * 19 18 17 25 25 C 1.52996 * 109.47010 * 204.99881 * 15 14 12 26 26 C 1.39837 * 119.99496 * 359.71613 * 11 10 9 27 27 C 1.36554 * 119.99815 * 359.97438 * 26 11 10 28 28 S 1.75863 * 125.11778 * 120.30083 * 4 2 1 29 29 H 0.96703 * 114.00365 * 60.00639 * 1 2 3 30 30 H 1.08999 * 109.46754 * 119.99654 * 2 1 3 31 31 H 1.48501 * 109.99922 * 298.67899 * 3 2 1 32 32 H 1.48508 * 109.99737 * 59.99432 * 3 2 1 33 33 H 1.08006 * 122.45976 * 0.02562 * 5 4 2 34 34 H 1.08000 * 122.64793 * 180.02562 * 6 5 4 35 35 H 1.08004 * 120.00202 * 359.97438 * 9 8 7 36 36 H 1.08008 * 119.99783 * 180.24878 * 10 9 8 37 37 H 0.97005 * 120.00189 * 0.02562 * 14 12 11 38 38 H 1.09001 * 109.47223 * 180.02562 * 17 15 14 39 39 H 1.09000 * 109.47121 * 300.00545 * 17 15 14 40 40 H 1.09001 * 109.47089 * 299.99965 * 18 17 15 41 41 H 1.08996 * 109.47129 * 179.97438 * 18 17 15 42 42 H 1.09001 * 109.47349 * 300.00323 * 24 19 18 43 43 H 1.08997 * 109.47332 * 180.02562 * 24 19 18 44 44 H 1.09002 * 109.47016 * 60.00838 * 25 15 14 45 45 H 1.09001 * 109.47086 * 179.97438 * 25 15 14 46 46 H 1.07997 * 119.99418 * 179.97438 * 26 11 10 47 47 H 1.08004 * 119.99889 * 180.02562 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 1.6722 -1.9847 -1.5428 6 6 2.2374 -2.4240 -2.7203 7 6 2.9670 -1.4970 -3.3761 8 6 3.6724 -1.7152 -4.6537 9 6 3.6191 -2.9657 -5.2769 10 6 4.2678 -3.1662 -6.4619 11 6 4.9947 -2.1242 -7.0461 12 6 5.7005 -2.3425 -8.3234 13 8 6.3321 -1.4363 -8.8316 14 7 5.6450 -3.5464 -8.9267 15 6 6.3453 -3.7631 -10.1952 16 1 6.3100 -2.8505 -10.7901 17 6 7.8032 -4.1337 -9.9160 18 6 7.8528 -5.4147 -9.0808 19 6 7.1758 -6.5512 -9.8495 20 1 7.6969 -6.7124 -10.7933 21 7 7.2238 -7.7780 -9.0501 22 8 7.7906 -8.7653 -9.4831 23 8 6.6970 -7.8105 -7.9523 24 6 5.7179 -6.1806 -10.1287 25 6 5.6683 -4.8996 -10.9638 26 6 5.0523 -0.8752 -6.4199 27 6 4.3983 -0.6730 -5.2383 28 16 2.9529 0.0092 -2.4678 29 1 -0.3934 0.4416 -0.7651 30 1 1.7922 -0.5138 0.8900 31 1 1.5879 2.4585 -1.2243 32 1 1.5613 2.4679 1.2085 33 1 1.0639 -2.6225 -0.9185 34 1 2.1069 -3.4307 -3.0892 35 1 3.0620 -3.7720 -4.8231 36 1 4.2234 -4.1310 -6.9453 37 1 5.1408 -4.2693 -8.5214 38 1 8.3244 -4.2945 -10.8597 39 1 8.2855 -3.3240 -9.3683 40 1 7.3317 -5.2535 -8.1370 41 1 8.8914 -5.6790 -8.8822 42 1 5.1968 -6.0194 -9.1849 43 1 5.2355 -6.9905 -10.6759 44 1 4.6296 -4.6355 -11.1628 45 1 6.1890 -5.0605 -11.9078 46 1 5.6140 -0.0706 -6.8709 47 1 4.4425 0.2918 -4.7549 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16623254_13308390.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:42:42 Heat of formation + Delta-G solvation = -10.644777 kcal Electronic energy + Delta-G solvation = -32646.893051 eV Core-core repulsion = 28083.932658 eV Total energy + Delta-G solvation = -4562.960393 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 389.118 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -43.41019 -41.64242 -40.31681 -39.35867 -38.83109 -37.53079 -37.47423 -35.27653 -33.64189 -32.45476 -32.28860 -31.67604 -30.34862 -27.58436 -26.91288 -24.83035 -24.21410 -23.98472 -23.57124 -23.19841 -22.06466 -20.69866 -20.28422 -19.82796 -19.38311 -19.24405 -18.71007 -18.28508 -17.70616 -17.09973 -16.81935 -16.59911 -16.36096 -16.23898 -16.13623 -15.76015 -15.49182 -15.25588 -15.01922 -14.62968 -14.53896 -14.44871 -14.31707 -13.95815 -13.80346 -13.68925 -13.63056 -13.61604 -13.29596 -13.10449 -12.67152 -12.61510 -12.54857 -12.50644 -12.42290 -12.22425 -12.17685 -12.08712 -11.77232 -11.61450 -11.52598 -11.14169 -10.88042 -10.65469 -10.24092 -10.19305 -9.54859 -9.03396 -5.09050 -0.89429 -0.63837 0.24827 0.33437 0.39002 0.67765 0.76133 1.20082 1.51993 1.55786 1.84146 1.95474 2.01371 2.82230 2.95916 3.02180 3.30282 3.40446 3.45795 3.55285 3.64870 3.68937 3.73744 3.73872 3.83655 3.90137 3.94926 4.11401 4.18815 4.28793 4.32466 4.35202 4.41117 4.52015 4.55575 4.61906 4.65565 4.74094 4.82726 4.85121 4.91726 4.94584 5.01497 5.05807 5.10699 5.21774 5.22761 5.28676 5.32026 5.37278 5.48193 5.72791 6.37189 6.37481 6.39368 7.07843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.539 6.539 2 C -0.034 4.034 3 Si 0.709 3.291 4 C -0.218 4.218 5 C -0.111 4.111 6 C -0.117 4.117 7 C -0.160 4.160 8 C 0.007 3.993 9 C -0.110 4.110 10 C -0.069 4.069 11 C -0.152 4.152 12 C 0.561 3.439 13 O -0.574 6.574 14 N -0.710 5.710 15 C 0.138 3.862 16 H 0.092 0.908 17 C -0.120 4.120 18 C -0.118 4.118 19 C 0.020 3.980 20 H 0.154 0.846 21 N -0.012 5.012 22 O -0.204 6.204 23 O -0.165 6.165 24 C -0.123 4.123 25 C -0.111 4.111 26 C -0.062 4.062 27 C -0.129 4.129 28 S 0.124 5.876 29 H 0.388 0.612 30 H 0.139 0.861 31 H -0.266 1.266 32 H -0.272 1.272 33 H 0.154 0.846 34 H 0.165 0.835 35 H 0.158 0.842 36 H 0.158 0.842 37 H 0.410 0.590 38 H 0.102 0.898 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.103 0.897 45 H 0.109 0.891 46 H 0.131 0.869 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.424 -0.637 -2.290 2.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.347 6.347 2 C -0.146 4.146 3 Si 0.612 3.388 4 C -0.336 4.336 5 C -0.141 4.141 6 C -0.147 4.147 7 C -0.277 4.277 8 C 0.005 3.995 9 C -0.129 4.129 10 C -0.088 4.088 11 C -0.156 4.156 12 C 0.350 3.650 13 O -0.454 6.454 14 N -0.364 5.364 15 C 0.034 3.966 16 H 0.110 0.890 17 C -0.159 4.159 18 C -0.156 4.156 19 C -0.077 4.077 20 H 0.171 0.829 21 N 0.507 4.493 22 O -0.416 6.416 23 O -0.389 6.389 24 C -0.161 4.161 25 C -0.149 4.149 26 C -0.081 4.081 27 C -0.147 4.147 28 S 0.392 5.608 29 H 0.237 0.763 30 H 0.157 0.843 31 H -0.191 1.191 32 H -0.198 1.198 33 H 0.171 0.829 34 H 0.183 0.817 35 H 0.176 0.824 36 H 0.175 0.825 37 H 0.249 0.751 38 H 0.120 0.880 39 H 0.088 0.912 40 H 0.104 0.896 41 H 0.096 0.904 42 H 0.111 0.889 43 H 0.113 0.887 44 H 0.121 0.879 45 H 0.127 0.873 46 H 0.149 0.851 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.453 2.598 -2.774 3.828 hybrid contribution -1.638 -1.863 0.244 2.493 sum -2.091 0.735 -2.530 3.364 Atomic orbital electron populations 1.86600 1.17803 1.80202 1.50122 1.24463 0.83374 1.10112 0.96666 0.94473 0.91005 0.73844 0.79483 1.25096 1.06955 0.99238 1.02294 1.20185 1.01319 0.94895 0.97704 1.20633 0.97864 1.01280 0.94932 1.23182 1.06634 0.98216 0.99685 1.18457 0.95098 0.94591 0.91355 1.21188 1.00021 0.96390 0.95330 1.21225 0.94035 0.98564 0.94937 1.20047 1.03068 0.96090 0.96350 1.18376 0.79698 0.82465 0.84452 1.90789 1.44280 1.43837 1.66521 1.45990 1.53165 1.12867 1.24331 1.21124 0.90957 0.99906 0.84591 0.88972 1.21879 0.97218 0.95159 1.01625 1.21835 1.01330 0.92636 0.99807 1.24640 1.04013 0.81786 0.97256 0.82854 1.45442 0.97340 1.04976 1.01562 1.94599 1.43834 1.28491 1.74695 1.94522 1.44919 1.90958 1.08517 1.21969 0.89897 1.00702 1.03570 1.21808 1.04031 0.90261 0.98801 1.20948 0.96547 0.96558 0.94087 1.21040 0.98274 0.99280 0.96152 1.84185 1.48576 1.13153 1.14924 0.76274 0.84330 1.19114 1.19784 0.82876 0.81743 0.82444 0.82464 0.75062 0.87950 0.91204 0.89594 0.90427 0.88942 0.88724 0.87878 0.87263 0.85119 0.84824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.47 12.86 -148.98 -1.92 -2.39 16 2 C -0.03 0.06 2.96 71.23 0.21 0.27 16 3 Si 0.71 -1.05 30.96 68.60 2.12 1.07 16 4 C -0.22 0.22 5.73 24.66 0.14 0.36 16 5 C -0.11 0.16 10.00 21.14 0.21 0.37 16 6 C -0.12 0.27 9.64 21.41 0.21 0.48 16 7 C -0.16 0.05 6.37 23.98 0.15 0.21 16 8 C 0.01 0.00 5.88 -20.05 -0.12 -0.12 16 9 C -0.11 0.44 9.48 22.26 0.21 0.66 16 10 C -0.07 0.33 9.48 22.26 0.21 0.54 16 11 C -0.15 -0.06 5.88 -20.05 -0.12 -0.18 16 12 C 0.56 1.04 7.73 86.70 0.67 1.71 16 13 O -0.57 -5.67 15.99 -3.99 -0.06 -5.73 16 14 N -0.71 4.02 4.18 -445.67 -1.86 2.16 16 15 C 0.14 -1.02 2.78 44.99 0.13 -0.90 16 16 H 0.09 -0.36 7.58 -2.39 -0.02 -0.38 16 17 C -0.12 0.82 5.60 30.60 0.17 1.00 16 18 C -0.12 0.72 5.15 30.60 0.16 0.87 16 19 C 0.02 -0.13 2.88 44.99 0.13 0.00 16 20 H 0.15 -1.47 8.09 -2.39 -0.02 -1.49 16 21 N -0.01 -0.03 3.82 -169.38 -0.65 -0.67 16 22 O -0.20 -1.54 19.21 18.88 0.36 -1.17 16 23 O -0.16 -0.82 18.51 18.89 0.35 -0.47 16 24 C -0.12 1.31 5.13 30.59 0.16 1.47 16 25 C -0.11 1.41 5.61 30.59 0.17 1.58 16 26 C -0.06 -0.15 9.53 22.26 0.21 0.06 16 27 C -0.13 -0.12 9.54 22.26 0.21 0.09 16 28 S 0.12 -0.07 19.46 -56.49 -1.10 -1.17 16 29 H 0.39 -1.68 8.70 -74.06 -0.64 -2.32 16 30 H 0.14 -0.55 7.96 -2.39 -0.02 -0.57 16 31 H -0.27 -0.68 7.11 99.48 0.71 0.03 16 32 H -0.27 -1.29 7.11 99.48 0.71 -0.58 16 33 H 0.15 -0.49 8.06 -2.91 -0.02 -0.51 16 34 H 0.17 -1.15 6.88 -2.91 -0.02 -1.17 16 35 H 0.16 -1.41 6.74 -2.91 -0.02 -1.43 16 36 H 0.16 -1.79 6.38 -2.91 -0.02 -1.81 16 37 H 0.41 -4.21 4.88 -92.70 -0.45 -4.66 16 38 H 0.10 -1.05 8.14 -2.39 -0.02 -1.07 16 39 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 40 H 0.09 -0.40 7.49 -2.39 -0.02 -0.42 16 41 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 42 H 0.09 -1.04 6.39 -2.39 -0.02 -1.06 16 43 H 0.09 -1.02 8.14 -2.39 -0.02 -1.04 16 44 H 0.10 -1.42 8.14 -2.39 -0.02 -1.44 16 45 H 0.11 -1.66 8.14 -2.39 -0.02 -1.68 16 46 H 0.13 0.48 7.64 -2.91 -0.02 0.46 16 47 H 0.13 -0.11 7.26 -2.91 -0.02 -0.13 16 Total: 0.00 -22.05 401.46 0.35 -21.70 By element: Atomic # 1 Polarization: -21.77 SS G_CDS: -0.01 Total: -21.78 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: 3.12 Total: 8.47 kcal Atomic # 7 Polarization: 3.99 SS G_CDS: -2.51 Total: 1.48 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: -1.27 Total: -9.76 kcal Atomic # 14 Polarization: -1.05 SS G_CDS: 2.12 Total: 1.07 kcal Atomic # 16 Polarization: -0.07 SS G_CDS: -1.10 Total: -1.17 kcal Total: -22.05 0.35 -21.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16623254_13308390.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.051 kcal (2) G-P(sol) polarization free energy of solvation -22.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds