Wall clock time and date at job start Sun Mar 7 2021 09:43:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 O
2 2 C 1.42903 * 1
3 3 Si 1.86302 * 109.46727 * 2 1
4 4 C 1.50703 * 109.46921 * 240.00357 * 2 1 3
5 5 C 1.38242 * 119.97438 * 120.01934 * 4 2 1
6 6 C 1.38288 * 120.11561 * 179.97438 * 5 4 2
7 7 C 1.38124 * 120.05112 * 359.76314 * 6 5 4
8 8 C 1.38754 * 119.94576 * 0.51219 * 7 6 5
9 9 O 1.35897 * 120.05635 * 179.74701 * 8 7 6
10 10 C 1.42893 * 117.00107 * 359.72128 * 9 8 7
11 11 C 1.53003 * 109.47463 * 180.02562 * 10 9 8
12 12 C 1.52996 * 109.47259 * 180.02562 * 11 10 9
13 13 C 1.50708 * 109.47060 * 179.97438 * 12 11 10
14 14 O 1.21285 * 119.99778 * 0.02562 * 13 12 11
15 15 N 1.34769 * 119.99920 * 179.97438 * 13 12 11
16 16 C 1.46505 * 120.00083 * 180.02562 * 15 13 12
17 17 H 1.08994 * 109.46851 * 325.00199 * 16 15 13
18 18 C 1.52997 * 109.46880 * 85.00127 * 16 15 13
19 19 C 1.52994 * 109.47347 * 60.00307 * 18 16 15
20 20 C 1.53000 * 109.47120 * 59.99744 * 19 18 16
21 21 H 1.09001 * 109.46739 * 60.00309 * 20 19 18
22 22 N 1.46507 * 109.46915 * 180.02562 * 20 19 18
23 23 O 1.21803 * 119.99839 * 239.99982 * 22 20 19
24 24 O 1.21799 * 119.99959 * 59.72895 * 22 20 19
25 25 C 1.52996 * 109.47253 * 299.99938 * 20 19 18
26 26 C 1.53000 * 109.47286 * 205.00199 * 16 15 13
27 27 C 1.38168 * 119.97053 * 299.99859 * 4 2 1
28 28 H 0.96701 * 114.00566 * 59.99975 * 1 2 3
29 29 H 1.08991 * 109.47392 * 120.00416 * 2 1 3
30 30 H 1.48499 * 110.00095 * 60.00638 * 3 2 1
31 31 H 1.48501 * 109.99784 * 181.32386 * 3 2 1
32 32 H 1.08004 * 119.93893 * 359.97438 * 5 4 2
33 33 H 1.07996 * 119.97162 * 180.02562 * 6 5 4
34 34 H 1.08001 * 120.02764 * 180.28372 * 7 6 5
35 35 H 1.09001 * 109.47244 * 60.00288 * 10 9 8
36 36 H 1.09007 * 109.47509 * 300.00409 * 10 9 8
37 37 H 1.09001 * 109.46939 * 59.99753 * 11 10 9
38 38 H 1.09007 * 109.46808 * 300.00491 * 11 10 9
39 39 H 1.08999 * 109.47337 * 60.00476 * 12 11 10
40 40 H 1.08995 * 109.47147 * 299.99933 * 12 11 10
41 41 H 0.97000 * 120.00396 * 0.02562 * 15 13 12
42 42 H 1.09001 * 109.47245 * 180.02562 * 18 16 15
43 43 H 1.09003 * 109.47498 * 299.99863 * 18 16 15
44 44 H 1.09001 * 109.47066 * 299.99694 * 19 18 16
45 45 H 1.09004 * 109.47131 * 179.97438 * 19 18 16
46 46 H 1.08994 * 109.47269 * 179.97438 * 25 20 19
47 47 H 1.09001 * 109.47094 * 300.00149 * 25 20 19
48 48 H 1.09001 * 109.47192 * 179.97438 * 26 16 15
49 49 H 1.09004 * 109.47131 * 59.99818 * 26 16 15
50 50 H 1.07993 * 120.02866 * 359.97438 * 27 4 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 8 0.0000 0.0000 0.0000
2 6 1.4290 0.0000 0.0000
3 14 2.0499 1.7565 0.0000
4 6 1.9313 -0.7104 -1.2305
5 6 2.7264 -0.0381 -2.1400
6 6 3.1893 -0.6872 -3.2698
7 6 2.8622 -2.0110 -3.4899
8 6 2.0596 -2.6864 -2.5816
9 8 1.7322 -3.9873 -2.7985
10 6 2.2441 -4.5959 -3.9857
11 6 1.7728 -6.0498 -4.0576
12 6 2.3215 -6.7015 -5.3284
13 6 1.8578 -8.1338 -5.3988
14 8 1.1571 -8.5883 -4.5193
15 7 2.2210 -8.9092 -6.4395
16 6 1.7698 -10.3014 -6.5083
17 1 1.7273 -10.7196 -5.5027
18 6 0.3785 -10.3558 -7.1425
19 6 0.4381 -9.7687 -8.5540
20 6 1.4178 -10.5810 -9.4033
21 1 1.0820 -11.6168 -9.4544
22 7 1.4753 -10.0184 -10.7548
23 8 1.1690 -10.7045 -11.7135
24 8 1.8246 -8.8633 -10.9193
25 6 2.8091 -10.5265 -8.7692
26 6 2.7495 -11.1137 -7.3576
27 6 1.5972 -2.0332 -1.4486
28 1 -0.3934 0.4417 -0.7650
29 1 1.7924 -0.5138 0.8899
30 1 1.5615 2.4679 1.2086
31 1 3.5345 1.7704 -0.0322
32 1 2.9864 0.9959 -1.9676
33 1 3.8106 -0.1599 -3.9785
34 1 3.2278 -2.5189 -4.3701
35 1 3.3336 -4.5672 -3.9680
36 1 1.8805 -4.0530 -4.8582
37 1 0.6834 -6.0781 -4.0755
38 1 2.1361 -6.5930 -3.1851
39 1 3.4110 -6.6733 -5.3100
40 1 1.9586 -6.1585 -6.2010
41 1 2.7811 -8.5457 -7.1431
42 1 0.0426 -11.3915 -7.1933
43 1 -0.3195 -9.7771 -6.5374
44 1 0.7738 -8.7329 -8.5029
45 1 -0.5531 -9.8079 -9.0060
46 1 3.5069 -11.1056 -9.3739
47 1 3.1448 -9.4908 -8.7181
48 1 2.4141 -12.1495 -7.4083
49 1 3.7407 -11.0749 -6.9058
50 1 0.9767 -2.5581 -0.7376
There are 68 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 68
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
s_22_16623254_4549616.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 7 2021 09:43:47
Heat of formation + Delta-G solvation = -97.297803 kcal
Electronic energy + Delta-G solvation = -32028.567017 eV
Core-core repulsion = 27411.381572 eV
Total energy + Delta-G solvation = -4617.185446 eV
No. of doubly occupied orbitals = 68
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 365.176 amu
Computer time = 1.20 seconds
Orbital eigenvalues (eV)
-43.41515 -41.51124 -41.22840 -39.54647 -39.10913 -37.44022 -37.28543 -35.28849
-35.00450 -32.59860 -32.45649 -32.17835 -31.17014 -28.54947 -27.22080 -26.75457
-24.51266 -24.02704 -23.65529 -23.31383 -22.07224 -21.76054 -20.84369 -19.81131
-19.39462 -19.22686 -18.50410 -18.31277 -17.80063 -17.60716 -17.22303 -17.11820
-16.93219 -16.80270 -16.22869 -16.08124 -15.76917 -15.37058 -15.13968 -14.89889
-14.80512 -14.68378 -14.28863 -14.17202 -14.12726 -14.03349 -13.92901 -13.41280
-13.36578 -13.07389 -12.87580 -12.76886 -12.70364 -12.52158 -12.46171 -12.42965
-12.27637 -12.03505 -12.02156 -11.91569 -11.75127 -11.71888 -11.60849 -11.03585
-10.49436 -10.36525 -9.90710 -9.23265 -5.03185 -0.49000 0.21479 0.41747
0.59243 1.27840 1.45940 1.63519 1.74110 1.96466 2.23808 2.68453
2.68799 2.76738 3.15541 3.25738 3.40081 3.43708 3.46939 3.61848
3.63518 3.66428 3.71752 3.75328 3.77197 3.83005 3.96364 3.99792
4.05488 4.09321 4.10785 4.18778 4.21515 4.32191 4.33638 4.40174
4.43590 4.49068 4.54477 4.55393 4.62610 4.65449 4.75759 4.88173
4.97742 5.07104 5.20157 5.27637 5.29257 5.37212 5.44513 5.69668
6.21097 6.40316 6.56065 6.57447 7.01676
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 O -0.539 6.539
2 C -0.070 4.070
3 Si 0.694 3.306
4 C -0.081 4.081
5 C -0.157 4.157
6 C -0.073 4.073
7 C -0.205 4.205
8 C 0.132 3.868
9 O -0.311 6.311
10 C 0.059 3.941
11 C -0.105 4.105
12 C -0.139 4.139
13 C 0.517 3.483
14 O -0.531 6.531
15 N -0.730 5.730
16 C 0.140 3.860
17 H 0.103 0.897
18 C -0.126 4.126
19 C -0.122 4.122
20 C 0.017 3.983
21 H 0.137 0.863
22 N -0.018 5.018
23 O -0.162 6.162
24 O -0.157 6.157
25 C -0.126 4.126
26 C -0.122 4.122
27 C -0.126 4.126
28 H 0.380 0.620
29 H 0.115 0.885
30 H -0.255 1.255
31 H -0.258 1.258
32 H 0.128 0.872
33 H 0.130 0.870
34 H 0.130 0.870
35 H 0.064 0.936
36 H 0.065 0.935
37 H 0.084 0.916
38 H 0.083 0.917
39 H 0.099 0.901
40 H 0.100 0.900
41 H 0.401 0.599
42 H 0.083 0.917
43 H 0.089 0.911
44 H 0.091 0.909
45 H 0.082 0.918
46 H 0.087 0.913
47 H 0.089 0.911
48 H 0.091 0.909
49 H 0.091 0.909
50 H 0.134 0.866
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.066 0.129 -2.494 3.955
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 O -0.344 6.344
2 C -0.181 4.181
3 Si 0.596 3.404
4 C -0.081 4.081
5 C -0.174 4.174
6 C -0.091 4.091
7 C -0.224 4.224
8 C 0.087 3.913
9 O -0.225 6.225
10 C -0.016 4.016
11 C -0.143 4.143
12 C -0.179 4.179
13 C 0.304 3.696
14 O -0.406 6.406
15 N -0.384 5.384
16 C 0.035 3.965
17 H 0.121 0.879
18 C -0.165 4.165
19 C -0.161 4.161
20 C -0.081 4.081
21 H 0.155 0.845
22 N 0.505 4.495
23 O -0.381 6.381
24 O -0.379 6.379
25 C -0.164 4.164
26 C -0.160 4.160
27 C -0.145 4.145
28 H 0.227 0.773
29 H 0.133 0.867
30 H -0.180 1.180
31 H -0.183 1.183
32 H 0.146 0.854
33 H 0.148 0.852
34 H 0.147 0.853
35 H 0.082 0.918
36 H 0.083 0.917
37 H 0.102 0.898
38 H 0.102 0.898
39 H 0.117 0.883
40 H 0.118 0.882
41 H 0.237 0.763
42 H 0.102 0.898
43 H 0.108 0.892
44 H 0.110 0.890
45 H 0.101 0.899
46 H 0.106 0.894
47 H 0.108 0.892
48 H 0.109 0.891
49 H 0.110 0.890
50 H 0.152 0.848
Dipole moment (debyes) X Y Z Total
from point charges 2.980 -0.380 -0.034 3.004
hybrid contribution 0.571 -0.450 -0.892 1.151
sum 3.551 -0.830 -0.925 3.762
Atomic orbital electron populations
1.86515 1.16920 1.81719 1.49230 1.25120 0.85387 1.10247 0.97335
0.94613 0.80917 0.77833 0.87081 1.20148 0.97475 0.93914 0.96580
1.20927 1.01061 0.99846 0.95602 1.20914 0.97824 0.93721 0.96669
1.21314 1.03456 0.96505 1.01129 1.19021 0.94413 0.83454 0.94456
1.86080 1.70928 1.22440 1.43052 1.22818 0.98579 0.93880 0.86315
1.21225 1.03006 0.92371 0.97664 1.21547 1.03138 0.92804 1.00450
1.20609 0.79855 0.88068 0.81117 1.90763 1.36917 1.74742 1.38219
1.46173 1.54332 1.12348 1.25551 1.21009 0.92764 0.81771 1.00926
0.87937 1.21934 0.98111 1.02780 0.93700 1.21873 0.98261 1.00437
0.95492 1.24382 1.01754 1.02269 0.79664 0.84527 1.44909 0.97996
1.01082 1.05534 1.94601 1.50224 1.58982 1.34303 1.94542 1.48101
1.02348 1.92863 1.21899 0.92417 1.04444 0.97659 1.21835 1.01332
1.00320 0.92559 1.20268 1.03109 0.93995 0.97099 0.77311 0.86740
1.17976 1.18303 0.85441 0.85197 0.85262 0.91792 0.91693 0.89776
0.89822 0.88282 0.88206 0.76338 0.89813 0.89223 0.89027 0.89893
0.89419 0.89227 0.89079 0.89024 0.84805
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 O -0.54 -0.43 12.77 -35.23 -0.45 -0.88 16
2 C -0.07 -0.02 2.82 36.01 0.10 0.08 16
3 Si 0.69 -0.62 29.79 -169.99 -5.06 -5.69 16
4 C -0.08 -0.07 5.39 -104.64 -0.56 -0.63 16
5 C -0.16 0.03 8.67 -39.56 -0.34 -0.31 16
6 C -0.07 0.04 10.04 -39.60 -0.40 -0.36 16
7 C -0.21 -0.02 9.04 -39.43 -0.36 -0.38 16
8 C 0.13 0.25 6.69 -39.22 -0.26 -0.01 16
9 O -0.31 -0.64 10.14 -19.42 -0.20 -0.84 16
10 C 0.06 -0.08 4.74 37.16 0.18 0.09 16
11 C -0.10 0.13 4.87 -26.73 -0.13 0.00 16
12 C -0.14 0.52 5.70 -27.88 -0.16 0.36 16
13 C 0.52 -0.68 7.79 -10.99 -0.09 -0.76 16
14 O -0.53 -1.63 15.65 5.55 0.09 -1.54 16
15 N -0.73 2.80 4.23 -53.80 -0.23 2.58 16
16 C 0.14 -0.53 2.78 -67.93 -0.19 -0.72 16
17 H 0.10 -0.22 7.58 -51.93 -0.39 -0.62 16
18 C -0.13 0.45 5.60 -26.74 -0.15 0.30 16
19 C -0.12 0.39 5.14 -26.73 -0.14 0.26 16
20 C 0.02 -0.05 2.88 -67.93 -0.20 -0.25 16
21 H 0.14 -0.56 8.09 -51.93 -0.42 -0.98 16
22 N -0.02 -0.02 3.82 -4.89 -0.02 -0.04 16
23 O -0.16 -0.55 19.21 -29.46 -0.57 -1.12 16
24 O -0.16 -0.38 18.50 -29.46 -0.55 -0.92 16
25 C -0.13 0.59 5.14 -26.73 -0.14 0.45 16
26 C -0.12 0.68 5.61 -26.73 -0.15 0.53 16
27 C -0.13 -0.27 9.55 -39.43 -0.38 -0.65 16
28 H 0.38 -1.19 8.70 45.56 0.40 -0.79 16
29 H 0.12 0.09 7.96 -51.93 -0.41 -0.33 16
30 H -0.25 -0.59 7.11 56.52 0.40 -0.19 16
31 H -0.26 -0.34 7.11 56.52 0.40 0.06 16
32 H 0.13 -0.26 4.87 -52.48 -0.26 -0.52 16
33 H 0.13 -0.36 8.06 -52.49 -0.42 -0.78 16
34 H 0.13 -0.26 6.30 -52.49 -0.33 -0.59 16
35 H 0.06 -0.17 7.65 -51.93 -0.40 -0.57 16
36 H 0.06 -0.18 7.68 -51.93 -0.40 -0.58 16
37 H 0.08 0.03 8.10 -51.93 -0.42 -0.39 16
38 H 0.08 0.03 8.10 -51.93 -0.42 -0.39 16
39 H 0.10 -0.55 8.14 -51.93 -0.42 -0.98 16
40 H 0.10 -0.54 8.14 -51.93 -0.42 -0.97 16
41 H 0.40 -2.33 6.87 -40.82 -0.28 -2.61 16
42 H 0.08 -0.38 8.14 -51.93 -0.42 -0.81 16
43 H 0.09 -0.15 8.14 -51.93 -0.42 -0.57 16
44 H 0.09 -0.26 7.49 -51.93 -0.39 -0.65 16
45 H 0.08 -0.21 8.14 -51.93 -0.42 -0.63 16
46 H 0.09 -0.39 8.14 -51.93 -0.42 -0.81 16
47 H 0.09 -0.44 6.39 -51.93 -0.33 -0.78 16
48 H 0.09 -0.57 8.14 -51.93 -0.42 -0.99 16
49 H 0.09 -0.54 8.14 -51.93 -0.42 -0.96 16
50 H 0.13 0.34 8.06 -52.49 -0.42 -0.09 16
LS Contribution 407.78 15.07 6.15 6.15
Total: 0.00 -10.12 407.78 -11.67 -21.79
By element:
Atomic # 1 Polarization: -10.01 SS G_CDS: -7.48 Total: -17.49 kcal
Atomic # 6 Polarization: 1.35 SS G_CDS: -3.36 Total: -2.01 kcal
Atomic # 7 Polarization: 2.78 SS G_CDS: -0.25 Total: 2.54 kcal
Atomic # 8 Polarization: -3.63 SS G_CDS: -1.67 Total: -5.30 kcal
Atomic # 14 Polarization: -0.62 SS G_CDS: -5.06 Total: -5.69 kcal
Total LS contribution 6.15 Total: 6.15 kcal
Total: -10.12 -11.67 -21.79 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_22_16623254_4549616.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -75.503 kcal
(2) G-P(sol) polarization free energy of solvation -10.124 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.627 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.671 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.795 kcal
(6) G-S(sol) free energy of system = (1) + (5) -97.298 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.20 seconds