Wall clock time and date at job start Sun Mar 7 2021 09:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35999 * 116.99765 * 2 1 4 4 C 1.39155 * 120.07430 * 179.97438 * 3 2 1 5 5 O 1.35996 * 120.07039 * 0.02562 * 4 3 2 6 6 C 1.42895 * 117.00029 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47422 * 180.02562 * 6 5 4 8 8 O 1.21280 * 119.99723 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99961 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99608 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47172 * 324.99563 * 10 9 7 12 12 C 1.52994 * 109.47335 * 85.00156 * 10 9 7 13 13 C 1.52997 * 109.47241 * 59.99627 * 12 10 9 14 14 C 1.53003 * 109.47259 * 60.00349 * 13 12 10 15 15 H 1.08997 * 109.47053 * 59.99366 * 14 13 12 16 16 N 1.46502 * 109.47356 * 180.02562 * 14 13 12 17 17 O 1.21807 * 119.99431 * 239.99948 * 16 14 13 18 18 O 1.21799 * 120.00247 * 59.99501 * 16 14 13 19 19 C 1.53004 * 109.46745 * 300.00105 * 14 13 12 20 20 C 1.52997 * 109.47327 * 59.99937 * 19 14 13 21 21 C 1.38558 * 119.85540 * 179.97438 * 4 3 2 22 22 C 1.38247 * 119.99917 * 0.02562 * 21 4 3 23 23 C 1.38255 * 120.14468 * 359.97438 * 22 21 4 24 24 C 1.50700 * 119.92343 * 180.02562 * 23 22 21 25 25 O 1.42901 * 109.46960 * 245.00106 * 24 23 22 26 26 Si 1.86300 * 109.47377 * 4.99947 * 24 23 22 27 27 C 1.38242 * 120.14765 * 359.97438 * 23 22 21 28 28 H 1.08996 * 109.47596 * 299.99815 * 1 2 3 29 29 H 1.09004 * 109.47087 * 60.00573 * 1 2 3 30 30 H 1.09008 * 109.46996 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47041 * 299.99647 * 6 5 4 32 32 H 1.08999 * 109.47176 * 59.99627 * 6 5 4 33 33 H 0.97003 * 120.00382 * 0.02562 * 9 7 6 34 34 H 1.09001 * 109.47349 * 179.97438 * 12 10 9 35 35 H 1.08997 * 109.46888 * 299.99981 * 12 10 9 36 36 H 1.08997 * 109.47308 * 300.00513 * 13 12 10 37 37 H 1.08997 * 109.47494 * 179.97438 * 13 12 10 38 38 H 1.09001 * 109.47227 * 300.00005 * 19 14 13 39 39 H 1.08997 * 109.47103 * 180.02562 * 19 14 13 40 40 H 1.09000 * 109.47088 * 180.02562 * 20 19 14 41 41 H 1.08997 * 109.47308 * 59.99584 * 20 19 14 42 42 H 1.07995 * 120.00001 * 180.02562 * 21 4 3 43 43 H 1.07998 * 119.92703 * 180.27362 * 22 21 4 44 44 H 1.08994 * 109.47427 * 125.00100 * 24 23 22 45 45 H 0.96694 * 114.00320 * 60.00300 * 25 24 23 46 46 H 1.48499 * 110.00171 * 180.02562 * 26 24 23 47 47 H 1.48503 * 109.99764 * 301.32123 * 26 24 23 48 48 H 1.07998 * 119.99453 * 179.97438 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 3.4359 1.2865 0.0005 5 8 4.1795 0.1478 0.0005 6 6 5.6002 0.3008 0.0017 7 6 6.2519 -1.0580 0.0009 8 8 5.5670 -2.0589 -0.0001 9 7 7.5957 -1.1609 0.0012 10 6 8.2291 -2.4819 0.0010 11 1 7.6270 -3.1737 0.5901 12 6 8.3367 -2.9957 -1.4361 13 6 9.1818 -2.0247 -2.2630 14 6 10.5811 -1.9195 -1.6530 15 1 11.0523 -2.9023 -1.6531 16 7 11.3901 -0.9892 -2.4444 17 8 12.4164 -1.3746 -2.9755 18 8 11.0366 0.1694 -2.5715 19 6 10.4735 -1.4057 -0.2159 20 6 9.6284 -2.3766 0.6110 21 6 4.0602 2.5235 0.0000 22 6 3.3027 3.6800 -0.0005 23 6 1.9222 3.6057 -0.0011 24 6 1.1014 4.8696 -0.0022 25 8 0.3639 4.9597 1.2185 26 14 2.2306 6.3434 -0.1558 27 6 1.2930 2.3748 -0.0016 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 5.9071 0.8510 -0.8879 32 1 5.9058 0.8502 0.8921 33 1 8.1435 -0.3603 0.0023 34 1 8.8084 -3.9784 -1.4363 35 1 7.3399 -3.0707 -1.8707 36 1 8.7106 -1.0419 -2.2628 37 1 9.2589 -2.3910 -3.2867 38 1 10.0021 -0.4228 -0.2157 39 1 11.4703 -1.3302 0.2186 40 1 9.5514 -2.0103 1.6348 41 1 10.0996 -3.3595 0.6109 42 1 5.1384 2.5841 0.0000 43 1 3.7905 4.6435 -0.0054 44 1 0.4095 4.8528 -0.8443 45 1 0.9168 4.9794 2.0115 46 1 1.4333 7.5962 -0.1575 47 1 3.1996 6.3601 0.9694 48 1 0.2145 2.3197 -0.0016 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16623254_60476.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:44:43 Heat of formation + Delta-G solvation = -111.346191 kcal Electronic energy + Delta-G solvation = -33519.458517 eV Core-core repulsion = 28738.519315 eV Total energy + Delta-G solvation = -4780.939202 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 367.160 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.41018 -41.88555 -41.33829 -39.84113 -39.02569 -38.79570 -37.43115 -37.02458 -35.30311 -32.59846 -32.56763 -31.90664 -31.44810 -29.48042 -28.45553 -27.21024 -26.23351 -24.50941 -23.89523 -23.38392 -22.68391 -22.16041 -20.88570 -19.84565 -19.80600 -19.39625 -18.72618 -18.50541 -18.30633 -18.04139 -17.64140 -17.23461 -17.00421 -16.79688 -16.49085 -16.17101 -15.98768 -15.87067 -15.80799 -15.35824 -15.15437 -14.88862 -14.77741 -14.32936 -14.21016 -13.99135 -13.92403 -13.79776 -13.59562 -13.49878 -12.88514 -12.71297 -12.67000 -12.58848 -12.51560 -12.43994 -12.24165 -12.15140 -12.03761 -12.02737 -12.02101 -11.74972 -11.65751 -11.00859 -10.64757 -10.41925 -9.82066 -8.89846 -4.99677 -0.48285 0.14086 0.26608 0.59798 1.23992 1.31423 1.36978 1.55043 1.92462 2.28227 2.41558 2.53107 2.69117 2.76946 3.15447 3.23906 3.31858 3.35719 3.42546 3.59291 3.61723 3.66477 3.69732 3.74415 3.76677 3.83618 3.90246 3.98706 4.06039 4.08966 4.22675 4.26056 4.30598 4.32959 4.43263 4.48480 4.50790 4.53107 4.55122 4.61995 4.62716 4.76542 4.96738 5.07155 5.12415 5.29834 5.34077 5.51842 5.90006 6.14716 6.35818 6.50180 6.56772 6.95372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.302 6.302 3 C 0.107 3.893 4 C 0.104 3.896 5 O -0.277 6.277 6 C 0.037 3.963 7 C 0.519 3.481 8 O -0.505 6.505 9 N -0.726 5.726 10 C 0.143 3.857 11 H 0.105 0.895 12 C -0.127 4.127 13 C -0.123 4.123 14 C 0.017 3.983 15 H 0.137 0.863 16 N -0.018 5.018 17 O -0.162 6.162 18 O -0.157 6.157 19 C -0.126 4.126 20 C -0.122 4.122 21 C -0.169 4.169 22 C -0.114 4.114 23 C -0.112 4.112 24 C -0.073 4.073 25 O -0.530 6.530 26 Si 0.688 3.312 27 C -0.146 4.146 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.402 0.598 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.139 0.861 43 H 0.133 0.867 44 H 0.118 0.882 45 H 0.376 0.624 46 H -0.257 1.257 47 H -0.260 1.260 48 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.827 0.480 1.346 2.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.215 6.215 3 C 0.061 3.939 4 C 0.058 3.942 5 O -0.189 6.189 6 C -0.042 4.042 7 C 0.303 3.697 8 O -0.378 6.378 9 N -0.383 5.383 10 C 0.039 3.961 11 H 0.123 0.877 12 C -0.166 4.166 13 C -0.161 4.161 14 C -0.081 4.081 15 H 0.155 0.845 16 N 0.505 4.495 17 O -0.381 6.381 18 O -0.378 6.378 19 C -0.165 4.165 20 C -0.160 4.160 21 C -0.188 4.188 22 C -0.132 4.132 23 C -0.113 4.113 24 C -0.183 4.183 25 O -0.336 6.336 26 Si 0.589 3.411 27 C -0.165 4.165 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.121 0.879 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.237 0.763 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.106 0.894 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.157 0.843 43 H 0.150 0.850 44 H 0.136 0.864 45 H 0.224 0.776 46 H -0.182 1.182 47 H -0.184 1.184 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.669 -0.442 1.726 1.903 hybrid contribution 0.231 0.474 0.903 1.046 sum 0.901 0.033 2.630 2.780 Atomic orbital electron populations 1.23133 0.78097 1.04409 1.01393 1.86244 1.21352 1.25342 1.88555 1.18279 0.89003 0.85569 1.01048 1.18267 0.88273 0.85722 1.01912 1.86269 1.15919 1.27815 1.88925 1.22479 0.81439 0.96134 1.04126 1.20045 0.82333 0.90667 0.76634 1.90805 1.62548 1.37963 1.46505 1.45966 1.06013 1.09436 1.76844 1.21034 0.93547 0.84996 0.96546 0.87732 1.21950 1.01368 0.98501 0.94809 1.21879 0.90404 1.03406 1.00427 1.24386 0.95127 0.94820 0.93760 0.84483 1.44905 1.01510 1.02707 1.00409 1.94604 1.13758 1.81839 1.47913 1.94541 1.74665 1.03509 1.65102 1.21905 1.03209 1.01148 0.90199 1.21841 0.93526 1.00813 0.99842 1.20992 1.00465 0.90677 1.06647 1.20747 0.92897 0.98064 1.01514 1.19980 0.93690 0.95105 1.02513 1.25011 1.01682 1.01709 0.89869 1.86600 1.36170 1.95488 1.15374 0.94920 0.79614 0.76432 0.90109 1.20947 1.00382 0.90409 1.04724 0.92524 0.92481 0.87876 0.88604 0.88767 0.76261 0.89644 0.89107 0.89030 0.89812 0.89224 0.89356 0.88921 0.88921 0.84301 0.84959 0.86407 0.77616 1.18238 1.18447 0.84189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.00 9.81 101.05 0.99 0.99 16 2 O -0.30 -1.17 10.28 -34.24 -0.35 -1.52 16 3 C 0.11 0.31 6.70 -39.12 -0.26 0.04 16 4 C 0.10 0.22 6.70 -39.12 -0.26 -0.04 16 5 O -0.28 -0.85 9.45 -47.35 -0.45 -1.30 16 6 C 0.04 -0.06 5.22 36.01 0.19 0.13 16 7 C 0.52 -0.03 7.87 -10.99 -0.09 -0.11 16 8 O -0.51 -2.49 16.16 -14.35 -0.23 -2.72 16 9 N -0.73 2.64 4.23 -53.80 -0.23 2.42 16 10 C 0.14 -0.54 2.78 -67.93 -0.19 -0.73 16 11 H 0.10 -0.23 7.58 -51.93 -0.39 -0.62 16 12 C -0.13 0.46 5.60 -26.74 -0.15 0.31 16 13 C -0.12 0.41 5.15 -26.73 -0.14 0.27 16 14 C 0.02 -0.05 2.88 -67.93 -0.20 -0.25 16 15 H 0.14 -0.59 8.09 -51.93 -0.42 -1.01 16 16 N -0.02 -0.02 3.82 -4.89 -0.02 -0.03 16 17 O -0.16 -0.53 19.21 -29.46 -0.57 -1.10 16 18 O -0.16 -0.35 18.50 -29.46 -0.55 -0.89 16 19 C -0.13 0.62 5.13 -26.73 -0.14 0.48 16 20 C -0.12 0.71 5.61 -26.73 -0.15 0.56 16 21 C -0.17 0.12 9.04 -39.46 -0.36 -0.24 16 22 C -0.11 0.10 8.66 -39.57 -0.34 -0.24 16 23 C -0.11 0.00 5.35 -104.61 -0.56 -0.56 16 24 C -0.07 0.04 2.80 36.01 0.10 0.14 16 25 O -0.53 -0.46 12.83 -35.23 -0.45 -0.91 16 26 Si 0.69 -1.03 29.87 -169.99 -5.08 -6.10 16 27 C -0.15 -0.17 8.67 -39.46 -0.34 -0.51 16 28 H 0.06 -0.05 7.67 -51.93 -0.40 -0.45 16 29 H 0.06 -0.07 7.66 -51.93 -0.40 -0.47 16 30 H 0.10 -0.14 8.14 -51.92 -0.42 -0.56 16 31 H 0.10 -0.40 7.66 -51.92 -0.40 -0.80 16 32 H 0.09 -0.40 7.67 -51.93 -0.40 -0.80 16 33 H 0.40 -2.43 6.87 -40.82 -0.28 -2.71 16 34 H 0.09 -0.40 8.14 -51.93 -0.42 -0.83 16 35 H 0.09 -0.14 8.14 -51.93 -0.42 -0.56 16 36 H 0.09 -0.27 7.49 -51.93 -0.39 -0.66 16 37 H 0.08 -0.22 8.14 -51.93 -0.42 -0.64 16 38 H 0.09 -0.48 6.39 -51.93 -0.33 -0.81 16 39 H 0.09 -0.41 8.14 -51.93 -0.42 -0.83 16 40 H 0.09 -0.57 8.14 -51.93 -0.42 -0.99 16 41 H 0.09 -0.60 8.14 -51.93 -0.42 -1.03 16 42 H 0.14 -0.53 6.30 -52.49 -0.33 -0.86 16 43 H 0.13 -0.37 4.83 -52.49 -0.25 -0.62 16 44 H 0.12 -0.15 7.96 -51.93 -0.41 -0.57 16 45 H 0.38 -0.71 8.70 45.56 0.40 -0.31 16 46 H -0.26 -0.50 7.11 56.52 0.40 -0.10 16 47 H -0.26 -0.04 7.01 56.52 0.40 0.35 16 48 H 0.14 0.02 6.30 -52.49 -0.33 -0.31 16 LS Contribution 394.60 15.07 5.95 5.95 Total: 0.00 -11.81 394.60 -10.36 -22.17 By element: Atomic # 1 Polarization: -9.68 SS G_CDS: -6.50 Total: -16.18 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: -1.89 Total: 0.23 kcal Atomic # 7 Polarization: 2.63 SS G_CDS: -0.25 Total: 2.38 kcal Atomic # 8 Polarization: -5.85 SS G_CDS: -2.59 Total: -8.44 kcal Atomic # 14 Polarization: -1.03 SS G_CDS: -5.08 Total: -6.10 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -11.81 -10.36 -22.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16623254_60476.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.177 kcal (2) G-P(sol) polarization free energy of solvation -11.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds