Wall clock time and date at job start Sun Mar 7 2021 09:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35999 * 116.99765 * 2 1 4 4 C 1.39155 * 120.07430 * 179.97438 * 3 2 1 5 5 O 1.35996 * 120.07039 * 0.02562 * 4 3 2 6 6 C 1.42895 * 117.00029 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47422 * 180.02562 * 6 5 4 8 8 O 1.21280 * 119.99723 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99961 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99608 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47172 * 324.99563 * 10 9 7 12 12 C 1.52994 * 109.47335 * 85.00156 * 10 9 7 13 13 C 1.52997 * 109.47241 * 59.99627 * 12 10 9 14 14 C 1.53003 * 109.47259 * 60.00349 * 13 12 10 15 15 H 1.08997 * 109.47053 * 59.99366 * 14 13 12 16 16 N 1.46502 * 109.47356 * 180.02562 * 14 13 12 17 17 O 1.21807 * 119.99431 * 239.99948 * 16 14 13 18 18 O 1.21799 * 120.00247 * 59.99501 * 16 14 13 19 19 C 1.53004 * 109.46745 * 300.00105 * 14 13 12 20 20 C 1.52997 * 109.47327 * 59.99937 * 19 14 13 21 21 C 1.38558 * 119.85540 * 179.97438 * 4 3 2 22 22 C 1.38247 * 119.99917 * 0.02562 * 21 4 3 23 23 C 1.38255 * 120.14468 * 359.97438 * 22 21 4 24 24 C 1.50700 * 119.92343 * 180.02562 * 23 22 21 25 25 O 1.42901 * 109.46960 * 245.00106 * 24 23 22 26 26 Si 1.86300 * 109.47377 * 4.99947 * 24 23 22 27 27 C 1.38242 * 120.14765 * 359.97438 * 23 22 21 28 28 H 1.08996 * 109.47596 * 299.99815 * 1 2 3 29 29 H 1.09004 * 109.47087 * 60.00573 * 1 2 3 30 30 H 1.09008 * 109.46996 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47041 * 299.99647 * 6 5 4 32 32 H 1.08999 * 109.47176 * 59.99627 * 6 5 4 33 33 H 0.97003 * 120.00382 * 0.02562 * 9 7 6 34 34 H 1.09001 * 109.47349 * 179.97438 * 12 10 9 35 35 H 1.08997 * 109.46888 * 299.99981 * 12 10 9 36 36 H 1.08997 * 109.47308 * 300.00513 * 13 12 10 37 37 H 1.08997 * 109.47494 * 179.97438 * 13 12 10 38 38 H 1.09001 * 109.47227 * 300.00005 * 19 14 13 39 39 H 1.08997 * 109.47103 * 180.02562 * 19 14 13 40 40 H 1.09000 * 109.47088 * 180.02562 * 20 19 14 41 41 H 1.08997 * 109.47308 * 59.99584 * 20 19 14 42 42 H 1.07995 * 120.00001 * 180.02562 * 21 4 3 43 43 H 1.07998 * 119.92703 * 180.27362 * 22 21 4 44 44 H 1.08994 * 109.47427 * 125.00100 * 24 23 22 45 45 H 0.96694 * 114.00320 * 60.00300 * 25 24 23 46 46 H 1.48499 * 110.00171 * 180.02562 * 26 24 23 47 47 H 1.48503 * 109.99764 * 301.32123 * 26 24 23 48 48 H 1.07998 * 119.99453 * 179.97438 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 3.4359 1.2865 0.0005 5 8 4.1795 0.1478 0.0005 6 6 5.6002 0.3008 0.0017 7 6 6.2519 -1.0580 0.0009 8 8 5.5670 -2.0589 -0.0001 9 7 7.5957 -1.1609 0.0012 10 6 8.2291 -2.4819 0.0010 11 1 7.6270 -3.1737 0.5901 12 6 8.3367 -2.9957 -1.4361 13 6 9.1818 -2.0247 -2.2630 14 6 10.5811 -1.9195 -1.6530 15 1 11.0523 -2.9023 -1.6531 16 7 11.3901 -0.9892 -2.4444 17 8 12.4164 -1.3746 -2.9755 18 8 11.0366 0.1694 -2.5715 19 6 10.4735 -1.4057 -0.2159 20 6 9.6284 -2.3766 0.6110 21 6 4.0602 2.5235 0.0000 22 6 3.3027 3.6800 -0.0005 23 6 1.9222 3.6057 -0.0011 24 6 1.1014 4.8696 -0.0022 25 8 0.3639 4.9597 1.2185 26 14 2.2306 6.3434 -0.1558 27 6 1.2930 2.3748 -0.0016 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 5.9071 0.8510 -0.8879 32 1 5.9058 0.8502 0.8921 33 1 8.1435 -0.3603 0.0023 34 1 8.8084 -3.9784 -1.4363 35 1 7.3399 -3.0707 -1.8707 36 1 8.7106 -1.0419 -2.2628 37 1 9.2589 -2.3910 -3.2867 38 1 10.0021 -0.4228 -0.2157 39 1 11.4703 -1.3302 0.2186 40 1 9.5514 -2.0103 1.6348 41 1 10.0996 -3.3595 0.6109 42 1 5.1384 2.5841 0.0000 43 1 3.7905 4.6435 -0.0054 44 1 0.4095 4.8528 -0.8443 45 1 0.9168 4.9794 2.0115 46 1 1.4333 7.5962 -0.1575 47 1 3.1996 6.3601 0.9694 48 1 0.2145 2.3197 -0.0016 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16623254_60476.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:44:42 Heat of formation + Delta-G solvation = -113.039183 kcal Electronic energy + Delta-G solvation = -33519.531931 eV Core-core repulsion = 28738.519315 eV Total energy + Delta-G solvation = -4781.012616 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 367.160 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.40080 -41.85980 -41.25329 -39.77709 -39.04438 -38.77446 -37.51882 -37.02581 -35.19899 -32.45543 -32.28417 -31.84702 -31.41816 -29.37151 -28.45068 -27.12369 -26.18924 -24.20798 -23.81139 -23.28210 -22.65515 -22.04228 -20.73135 -19.82870 -19.76654 -19.30427 -18.66441 -18.46742 -18.27695 -18.03589 -17.56091 -17.21986 -16.85862 -16.75689 -16.35481 -16.13874 -15.90684 -15.81077 -15.69635 -15.23150 -15.08437 -14.72188 -14.60661 -14.33381 -13.97409 -13.78780 -13.73133 -13.61737 -13.54773 -13.44268 -12.66750 -12.63824 -12.61364 -12.58863 -12.50399 -12.21539 -12.18265 -12.16544 -12.14299 -12.00518 -11.76836 -11.63341 -11.60728 -11.01870 -10.61568 -10.26819 -9.79563 -8.92972 -4.88369 -0.62722 0.16028 0.27175 0.68516 1.33050 1.43341 1.46518 1.62756 1.99227 2.30051 2.54633 2.55117 2.96723 3.02876 3.40657 3.45599 3.50195 3.57916 3.65460 3.72402 3.84936 3.88641 3.90792 3.94920 4.04088 4.09183 4.13375 4.13995 4.27530 4.30245 4.30644 4.35365 4.35751 4.56727 4.63777 4.65723 4.66904 4.73592 4.82585 4.85974 4.95471 5.00125 5.05937 5.12019 5.23638 5.34840 5.36626 5.58361 5.95160 6.35154 6.40328 6.49083 6.51980 7.09375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.334 6.334 3 C 0.077 3.923 4 C 0.086 3.914 5 O -0.313 6.313 6 C 0.030 3.970 7 C 0.517 3.483 8 O -0.566 6.566 9 N -0.708 5.708 10 C 0.141 3.859 11 H 0.088 0.912 12 C -0.121 4.121 13 C -0.117 4.117 14 C 0.019 3.981 15 H 0.151 0.849 16 N -0.012 5.012 17 O -0.209 6.209 18 O -0.159 6.159 19 C -0.122 4.122 20 C -0.109 4.109 21 C -0.160 4.160 22 C -0.112 4.112 23 C -0.115 4.115 24 C -0.084 4.084 25 O -0.550 6.550 26 Si 0.775 3.225 27 C -0.151 4.151 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.111 0.889 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.417 0.583 34 H 0.099 0.901 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.175 0.825 43 H 0.157 0.843 44 H 0.122 0.878 45 H 0.386 0.614 46 H -0.307 1.307 47 H -0.273 1.273 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.351 1.671 1.945 4.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.248 6.248 3 C 0.031 3.969 4 C 0.041 3.959 5 O -0.226 6.226 6 C -0.048 4.048 7 C 0.303 3.697 8 O -0.444 6.444 9 N -0.364 5.364 10 C 0.037 3.963 11 H 0.106 0.894 12 C -0.160 4.160 13 C -0.155 4.155 14 C -0.077 4.077 15 H 0.169 0.831 16 N 0.507 4.493 17 O -0.420 6.420 18 O -0.385 6.385 19 C -0.160 4.160 20 C -0.148 4.148 21 C -0.178 4.178 22 C -0.129 4.129 23 C -0.116 4.116 24 C -0.193 4.193 25 O -0.358 6.358 26 Si 0.680 3.320 27 C -0.170 4.170 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.129 0.871 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.255 0.745 34 H 0.118 0.882 35 H 0.086 0.914 36 H 0.109 0.891 37 H 0.095 0.905 38 H 0.116 0.884 39 H 0.111 0.889 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.192 0.808 43 H 0.174 0.826 44 H 0.140 0.860 45 H 0.235 0.765 46 H -0.236 1.236 47 H -0.199 1.199 48 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.288 0.711 2.307 3.326 hybrid contribution -0.313 0.152 0.745 0.823 sum 1.975 0.864 3.052 3.737 Atomic orbital electron populations 1.23282 0.76839 1.05201 1.02085 1.86186 1.22956 1.26572 1.89087 1.18663 0.89911 0.85617 1.02679 1.18564 0.88175 0.86510 1.02667 1.86217 1.18152 1.28960 1.89284 1.22810 0.79458 0.95590 1.06912 1.20453 0.83036 0.90664 0.75572 1.90782 1.64008 1.39911 1.49656 1.45856 1.05079 1.10327 1.75088 1.21076 0.94489 0.84557 0.96221 0.89408 1.21873 1.00118 0.99292 0.94716 1.21829 0.90230 1.03348 1.00094 1.24639 0.94351 0.94680 0.94080 0.83129 1.45439 1.01223 1.02798 0.99876 1.94608 1.15510 1.82005 1.49868 1.94514 1.74398 1.04672 1.64926 1.21971 1.03767 1.01656 0.88644 1.21793 0.91626 1.01481 0.99858 1.21367 1.02207 0.89383 1.04882 1.21045 0.92482 0.99100 1.00295 1.20107 0.94390 0.94719 1.02371 1.25293 1.02180 1.02208 0.89575 1.86571 1.37372 1.95590 1.16314 0.93964 0.77334 0.72454 0.88294 1.21022 1.00518 0.90542 1.04941 0.91982 0.91593 0.87082 0.85655 0.85693 0.74459 0.88232 0.91389 0.89101 0.90543 0.88437 0.88873 0.87726 0.87579 0.80821 0.82615 0.86044 0.76452 1.23599 1.19939 0.84095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.04 9.81 113.37 1.11 1.15 16 2 O -0.33 -3.38 10.28 -79.68 -0.82 -4.20 16 3 C 0.08 0.55 6.70 22.57 0.15 0.70 16 4 C 0.09 0.39 6.70 22.57 0.15 0.55 16 5 O -0.31 -2.19 9.45 -67.09 -0.63 -2.82 16 6 C 0.03 -0.12 5.22 71.24 0.37 0.25 16 7 C 0.52 0.09 7.87 87.66 0.69 0.78 16 8 O -0.57 -6.74 16.16 16.01 0.26 -6.48 16 9 N -0.71 5.73 4.23 -442.52 -1.87 3.85 16 10 C 0.14 -1.14 2.78 44.99 0.13 -1.02 16 11 H 0.09 -0.33 7.58 -2.39 -0.02 -0.34 16 12 C -0.12 0.86 5.60 30.59 0.17 1.03 16 13 C -0.12 0.82 5.15 30.59 0.16 0.98 16 14 C 0.02 -0.14 2.88 44.99 0.13 -0.01 16 15 H 0.15 -1.47 8.09 -2.39 -0.02 -1.49 16 16 N -0.01 -0.02 3.82 -169.38 -0.65 -0.67 16 17 O -0.21 -1.50 19.21 18.88 0.36 -1.14 16 18 O -0.16 -0.60 18.50 18.89 0.35 -0.25 16 19 C -0.12 1.44 5.13 30.59 0.16 1.59 16 20 C -0.11 1.48 5.61 30.60 0.17 1.65 16 21 C -0.16 0.49 9.04 22.35 0.20 0.69 16 22 C -0.11 0.39 8.66 22.28 0.19 0.58 16 23 C -0.12 0.04 5.35 -19.86 -0.11 -0.07 16 24 C -0.08 0.13 2.80 71.24 0.20 0.33 16 25 O -0.55 -1.01 12.83 -148.98 -1.91 -2.92 16 26 Si 0.77 -3.12 29.87 68.60 2.05 -1.07 16 27 C -0.15 -0.48 8.67 22.35 0.19 -0.29 16 28 H 0.06 0.00 7.67 -2.39 -0.02 -0.02 16 29 H 0.07 -0.05 7.66 -2.39 -0.02 -0.07 16 30 H 0.11 -0.10 8.14 -2.38 -0.02 -0.12 16 31 H 0.13 -1.32 7.66 -2.38 -0.02 -1.34 16 32 H 0.13 -1.35 7.67 -2.39 -0.02 -1.36 16 33 H 0.42 -5.90 6.87 -92.71 -0.64 -6.54 16 34 H 0.10 -0.99 8.14 -2.39 -0.02 -1.01 16 35 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 36 H 0.09 -0.61 7.49 -2.39 -0.02 -0.63 16 37 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 38 H 0.10 -1.28 6.39 -2.39 -0.02 -1.29 16 39 H 0.09 -1.07 8.14 -2.39 -0.02 -1.09 16 40 H 0.10 -1.54 8.14 -2.39 -0.02 -1.56 16 41 H 0.11 -1.63 8.14 -2.39 -0.02 -1.65 16 42 H 0.17 -1.93 6.30 -2.91 -0.02 -1.94 16 43 H 0.16 -1.33 4.83 -2.91 -0.01 -1.34 16 44 H 0.12 -0.33 7.96 -2.39 -0.02 -0.35 16 45 H 0.39 -1.48 8.70 -74.06 -0.64 -2.12 16 46 H -0.31 -1.37 7.11 99.48 0.71 -0.67 16 47 H -0.27 0.46 7.01 99.48 0.70 1.15 16 48 H 0.14 0.24 6.30 -2.91 -0.02 0.22 16 Total: 0.00 -31.89 394.60 0.98 -30.91 By element: Atomic # 1 Polarization: -23.89 SS G_CDS: -0.23 Total: -24.11 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: 4.07 Total: 8.91 kcal Atomic # 7 Polarization: 5.71 SS G_CDS: -2.52 Total: 3.19 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -2.39 Total: -17.82 kcal Atomic # 14 Polarization: -3.12 SS G_CDS: 2.05 Total: -1.07 kcal Total: -31.89 0.98 -30.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16623254_60476.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.131 kcal (2) G-P(sol) polarization free energy of solvation -31.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds