Wall clock time and date at job start Sun Mar 7 2021 09:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86289 * 109.47052 * 2 1 4 4 C 1.50700 * 109.46837 * 119.99963 * 2 1 3 5 5 C 1.32772 * 124.71191 * 65.00168 * 4 2 1 6 6 C 1.44430 * 113.08215 * 179.72672 * 5 4 2 7 7 C 1.47188 * 123.46200 * 180.28633 * 6 5 4 8 8 O 1.21639 * 119.99966 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00349 * 179.97438 * 7 6 5 10 10 C 1.46497 * 120.00258 * 180.02562 * 9 7 6 11 11 H 1.09007 * 109.46954 * 325.00169 * 10 9 7 12 12 C 1.52999 * 109.47272 * 85.00268 * 10 9 7 13 13 C 1.53005 * 109.46927 * 59.99906 * 12 10 9 14 14 C 1.53001 * 109.46902 * 60.00501 * 13 12 10 15 15 H 1.08999 * 109.47551 * 59.99805 * 14 13 12 16 16 N 1.46498 * 109.46920 * 180.02562 * 14 13 12 17 17 O 1.21806 * 119.99686 * 239.99776 * 16 14 13 18 18 O 1.21800 * 120.00393 * 59.99285 * 16 14 13 19 19 C 1.53009 * 109.46953 * 299.99631 * 14 13 12 20 20 C 1.52995 * 109.47206 * 205.00399 * 10 9 7 21 21 C 1.36005 * 113.07617 * 0.27143 * 6 5 4 22 22 S 1.70446 * 110.82171 * 359.97438 * 21 6 5 23 23 H 0.96695 * 114.00010 * 299.99451 * 1 2 3 24 24 H 1.09001 * 109.46840 * 239.99750 * 2 1 3 25 25 H 1.48501 * 110.00186 * 299.99887 * 3 2 1 26 26 H 1.48508 * 110.00290 * 61.31702 * 3 2 1 27 27 H 1.08002 * 123.46203 * 0.02562 * 5 4 2 28 28 H 0.97006 * 119.99753 * 0.02562 * 9 7 6 29 29 H 1.08999 * 109.47255 * 179.97438 * 12 10 9 30 30 H 1.08995 * 109.47386 * 300.00290 * 12 10 9 31 31 H 1.08999 * 109.47176 * 300.00077 * 13 12 10 32 32 H 1.09002 * 109.47118 * 179.97438 * 13 12 10 33 33 H 1.08999 * 109.47135 * 300.00430 * 19 14 13 34 34 H 1.08998 * 109.46953 * 180.02562 * 19 14 13 35 35 H 1.09001 * 109.47586 * 59.99750 * 20 10 9 36 36 H 1.08999 * 109.47268 * 180.02562 * 20 10 9 37 37 H 1.07999 * 124.58902 * 179.97438 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.7485 -2.0003 1.4864 6 6 2.3414 -2.4195 2.7349 7 6 2.2811 -3.8013 3.2384 8 8 1.7097 -4.6595 2.5928 9 7 2.8598 -4.1160 4.4141 10 6 2.8003 -5.4914 4.9150 11 1 1.8452 -5.9379 4.6382 12 6 3.9410 -6.3069 4.3029 13 6 5.2816 -5.6802 4.6914 14 6 5.4193 -5.6746 6.2152 15 1 5.3751 -6.6979 6.5879 16 7 6.7027 -5.0739 6.5873 17 8 7.5179 -5.7218 7.2191 18 8 6.9545 -3.9267 6.2647 19 6 4.2786 -4.8590 6.8274 20 6 2.9380 -5.4857 6.4387 21 6 2.9614 -1.4064 3.3973 22 16 2.8367 0.0531 2.5257 23 1 -0.3933 0.4416 0.7650 24 1 1.7924 -0.5139 -0.8900 25 1 1.5615 2.4678 -1.2085 26 1 1.5879 2.4586 1.2243 27 1 1.2155 -2.6687 0.8263 28 1 3.3158 -3.4317 4.9288 29 1 3.8970 -7.3301 4.6759 30 1 3.8429 -6.3110 3.2173 31 1 5.3259 -4.6568 4.3188 32 1 6.0943 -6.2614 4.2557 33 1 4.3229 -3.8357 6.4547 34 1 4.3770 -4.8546 7.9129 35 1 2.1254 -4.9047 6.8749 36 1 2.8942 -6.5091 6.8114 37 1 3.4646 -1.5123 4.3470 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16623254_6894386.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:45:08 Heat of formation + Delta-G solvation = -44.581108 kcal Electronic energy + Delta-G solvation = -24013.505290 eV Core-core repulsion = 20273.053107 eV Total energy + Delta-G solvation = -3740.452183 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 313.086 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.39960 -41.50947 -39.70950 -38.72303 -37.42512 -37.20195 -35.27632 -32.62172 -32.57624 -31.25761 -27.45347 -27.02695 -25.71400 -24.48350 -23.44180 -22.50400 -21.04778 -20.60652 -19.81492 -19.40382 -19.07071 -18.29686 -18.27139 -17.82259 -16.91038 -16.86405 -16.41165 -16.18901 -15.65127 -15.41500 -15.23841 -14.88235 -14.57115 -14.23903 -14.10079 -13.96076 -13.89534 -13.66808 -13.59952 -12.86256 -12.74784 -12.67054 -12.50392 -12.44375 -12.41630 -12.01838 -12.00244 -11.87719 -11.73263 -11.03183 -10.79827 -10.36911 -10.09997 -9.59831 -5.15176 -0.47234 -0.45086 0.26673 0.60950 0.61886 0.81428 1.12670 1.45866 1.82176 1.90745 2.24137 2.70521 2.78978 3.17116 3.19125 3.27774 3.43888 3.46561 3.63600 3.68457 3.73010 3.76197 3.86109 4.02035 4.08559 4.19751 4.34242 4.40466 4.45022 4.51672 4.57372 4.61945 4.66310 4.79171 4.96493 5.12256 5.22621 5.31006 6.24348 6.24896 6.57862 7.05387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.522 6.522 2 C -0.033 4.033 3 Si 0.649 3.351 4 C -0.242 4.242 5 C -0.053 4.053 6 C -0.159 4.159 7 C 0.581 3.419 8 O -0.529 6.529 9 N -0.724 5.724 10 C 0.142 3.858 11 H 0.105 0.895 12 C -0.126 4.126 13 C -0.123 4.123 14 C 0.017 3.983 15 H 0.138 0.862 16 N -0.018 5.018 17 O -0.162 6.162 18 O -0.158 6.158 19 C -0.126 4.126 20 C -0.122 4.122 21 C -0.206 4.206 22 S 0.204 5.796 23 H 0.377 0.623 24 H 0.128 0.872 25 H -0.233 1.233 26 H -0.238 1.238 27 H 0.156 0.844 28 H 0.398 0.602 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.268 1.393 2.001 2.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.329 6.329 2 C -0.145 4.145 3 Si 0.548 3.452 4 C -0.359 4.359 5 C -0.082 4.082 6 C -0.177 4.177 7 C 0.367 3.633 8 O -0.406 6.406 9 N -0.378 5.378 10 C 0.037 3.963 11 H 0.123 0.877 12 C -0.165 4.165 13 C -0.161 4.161 14 C -0.081 4.081 15 H 0.155 0.845 16 N 0.505 4.495 17 O -0.381 6.381 18 O -0.379 6.379 19 C -0.164 4.164 20 C -0.161 4.161 21 C -0.344 4.344 22 S 0.471 5.529 23 H 0.225 0.775 24 H 0.146 0.854 25 H -0.156 1.156 26 H -0.162 1.162 27 H 0.174 0.826 28 H 0.235 0.765 29 H 0.103 0.897 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -0.991 2.446 1.053 2.841 hybrid contribution -0.855 -1.350 0.837 1.804 sum -1.846 1.096 1.889 2.860 Atomic orbital electron populations 1.86651 1.17148 1.79886 1.49201 1.24408 0.83884 1.10098 0.96135 0.95230 0.91864 0.74938 0.83209 1.24765 1.09624 0.98541 1.02922 1.21045 0.97707 0.94459 0.94973 1.20214 1.05968 0.93897 0.97609 1.17622 0.77922 0.87143 0.80572 1.90833 1.43041 1.49719 1.56962 1.45983 1.57989 1.11266 1.22581 1.21027 1.00410 0.82218 0.92628 0.87743 1.21944 0.91840 0.99517 1.03228 1.21882 1.00378 1.04771 0.89101 1.24386 0.81547 1.01418 1.00712 0.84457 1.44904 1.04647 1.01160 0.98800 1.94600 1.44592 1.61633 1.37271 1.94542 1.83990 1.02908 1.56427 1.21901 0.92565 0.99898 1.02076 1.21843 0.95939 1.03454 0.94845 1.25812 1.04748 0.98680 1.05175 1.83221 1.50088 1.08683 1.10942 0.77459 0.85415 1.15645 1.16202 0.82609 0.76544 0.89704 0.89114 0.89035 0.89824 0.89419 0.89352 0.88983 0.88923 0.81211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 -0.29 12.88 -35.23 -0.45 -0.74 16 2 C -0.03 0.03 2.94 36.01 0.11 0.14 16 3 Si 0.65 -1.17 30.92 -169.99 -5.26 -6.43 16 4 C -0.24 0.17 5.65 -36.18 -0.20 -0.03 16 5 C -0.05 -0.04 9.95 -39.02 -0.39 -0.43 16 6 C -0.16 -0.02 5.98 -104.63 -0.63 -0.65 16 7 C 0.58 0.57 7.76 -12.63 -0.10 0.48 16 8 O -0.53 -2.50 16.46 5.24 0.09 -2.41 16 9 N -0.72 1.73 4.20 -54.96 -0.23 1.50 16 10 C 0.14 -0.45 2.78 -67.93 -0.19 -0.64 16 11 H 0.10 -0.18 7.58 -51.92 -0.39 -0.57 16 12 C -0.13 0.40 5.60 -26.73 -0.15 0.25 16 13 C -0.12 0.34 5.15 -26.73 -0.14 0.20 16 14 C 0.02 -0.05 2.88 -67.93 -0.20 -0.24 16 15 H 0.14 -0.54 8.09 -51.93 -0.42 -0.96 16 16 N -0.02 -0.02 3.82 -4.89 -0.02 -0.04 16 17 O -0.16 -0.57 19.21 -29.46 -0.57 -1.13 16 18 O -0.16 -0.41 18.50 -29.46 -0.55 -0.95 16 19 C -0.13 0.54 5.13 -26.73 -0.14 0.41 16 20 C -0.12 0.64 5.61 -26.73 -0.15 0.49 16 21 C -0.21 0.44 10.38 29.93 0.31 0.75 16 22 S 0.20 -0.45 20.20 -107.50 -2.17 -2.62 16 23 H 0.38 -0.91 8.70 45.56 0.40 -0.51 16 24 H 0.13 -0.21 7.96 -51.93 -0.41 -0.63 16 25 H -0.23 -0.27 7.11 56.52 0.40 0.13 16 26 H -0.24 0.10 7.11 56.52 0.40 0.50 16 27 H 0.16 0.28 8.06 -52.49 -0.42 -0.15 16 28 H 0.40 -1.71 5.36 -40.82 -0.22 -1.93 16 29 H 0.08 -0.38 8.14 -51.93 -0.42 -0.80 16 30 H 0.09 -0.11 8.14 -51.93 -0.42 -0.53 16 31 H 0.09 -0.19 7.49 -51.93 -0.39 -0.58 16 32 H 0.08 -0.19 8.14 -51.93 -0.42 -0.61 16 33 H 0.09 -0.40 6.39 -51.93 -0.33 -0.73 16 34 H 0.09 -0.37 8.14 -51.93 -0.42 -0.79 16 35 H 0.09 -0.50 8.14 -51.93 -0.42 -0.92 16 36 H 0.09 -0.57 8.14 -51.93 -0.42 -0.99 16 37 H 0.17 -0.82 7.01 -52.49 -0.37 -1.19 16 LS Contribution 325.70 15.07 4.91 4.91 Total: 0.00 -8.07 325.70 -10.40 -18.47 By element: Atomic # 1 Polarization: -6.97 SS G_CDS: -4.29 Total: -11.26 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -1.86 Total: 0.72 kcal Atomic # 7 Polarization: 1.70 SS G_CDS: -0.25 Total: 1.45 kcal Atomic # 8 Polarization: -3.76 SS G_CDS: -1.48 Total: -5.24 kcal Atomic # 14 Polarization: -1.17 SS G_CDS: -5.26 Total: -6.43 kcal Atomic # 16 Polarization: -0.45 SS G_CDS: -2.17 Total: -2.62 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -8.07 -10.40 -18.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16623254_6894386.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.115 kcal (2) G-P(sol) polarization free energy of solvation -8.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds