Wall clock time and date at job start Sun Mar 7 2021 09:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86289 * 109.47052 * 2 1 4 4 C 1.50700 * 109.46837 * 119.99963 * 2 1 3 5 5 C 1.32772 * 124.71191 * 65.00168 * 4 2 1 6 6 C 1.44430 * 113.08215 * 179.72672 * 5 4 2 7 7 C 1.47188 * 123.46200 * 180.28633 * 6 5 4 8 8 O 1.21639 * 119.99966 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00349 * 179.97438 * 7 6 5 10 10 C 1.46497 * 120.00258 * 180.02562 * 9 7 6 11 11 H 1.09007 * 109.46954 * 325.00169 * 10 9 7 12 12 C 1.52999 * 109.47272 * 85.00268 * 10 9 7 13 13 C 1.53005 * 109.46927 * 59.99906 * 12 10 9 14 14 C 1.53001 * 109.46902 * 60.00501 * 13 12 10 15 15 H 1.08999 * 109.47551 * 59.99805 * 14 13 12 16 16 N 1.46498 * 109.46920 * 180.02562 * 14 13 12 17 17 O 1.21806 * 119.99686 * 239.99776 * 16 14 13 18 18 O 1.21800 * 120.00393 * 59.99285 * 16 14 13 19 19 C 1.53009 * 109.46953 * 299.99631 * 14 13 12 20 20 C 1.52995 * 109.47206 * 205.00399 * 10 9 7 21 21 C 1.36005 * 113.07617 * 0.27143 * 6 5 4 22 22 S 1.70446 * 110.82171 * 359.97438 * 21 6 5 23 23 H 0.96695 * 114.00010 * 299.99451 * 1 2 3 24 24 H 1.09001 * 109.46840 * 239.99750 * 2 1 3 25 25 H 1.48501 * 110.00186 * 299.99887 * 3 2 1 26 26 H 1.48508 * 110.00290 * 61.31702 * 3 2 1 27 27 H 1.08002 * 123.46203 * 0.02562 * 5 4 2 28 28 H 0.97006 * 119.99753 * 0.02562 * 9 7 6 29 29 H 1.08999 * 109.47255 * 179.97438 * 12 10 9 30 30 H 1.08995 * 109.47386 * 300.00290 * 12 10 9 31 31 H 1.08999 * 109.47176 * 300.00077 * 13 12 10 32 32 H 1.09002 * 109.47118 * 179.97438 * 13 12 10 33 33 H 1.08999 * 109.47135 * 300.00430 * 19 14 13 34 34 H 1.08998 * 109.46953 * 180.02562 * 19 14 13 35 35 H 1.09001 * 109.47586 * 59.99750 * 20 10 9 36 36 H 1.08999 * 109.47268 * 180.02562 * 20 10 9 37 37 H 1.07999 * 124.58902 * 179.97438 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.7485 -2.0003 1.4864 6 6 2.3414 -2.4195 2.7349 7 6 2.2811 -3.8013 3.2384 8 8 1.7097 -4.6595 2.5928 9 7 2.8598 -4.1160 4.4141 10 6 2.8003 -5.4914 4.9150 11 1 1.8452 -5.9379 4.6382 12 6 3.9410 -6.3069 4.3029 13 6 5.2816 -5.6802 4.6914 14 6 5.4193 -5.6746 6.2152 15 1 5.3751 -6.6979 6.5879 16 7 6.7027 -5.0739 6.5873 17 8 7.5179 -5.7218 7.2191 18 8 6.9545 -3.9267 6.2647 19 6 4.2786 -4.8590 6.8274 20 6 2.9380 -5.4857 6.4387 21 6 2.9614 -1.4064 3.3973 22 16 2.8367 0.0531 2.5257 23 1 -0.3933 0.4416 0.7650 24 1 1.7924 -0.5139 -0.8900 25 1 1.5615 2.4678 -1.2085 26 1 1.5879 2.4586 1.2243 27 1 1.2155 -2.6687 0.8263 28 1 3.3158 -3.4317 4.9288 29 1 3.8970 -7.3301 4.6759 30 1 3.8429 -6.3110 3.2173 31 1 5.3259 -4.6568 4.3188 32 1 6.0943 -6.2614 4.2557 33 1 4.3229 -3.8357 6.4547 34 1 4.3770 -4.8546 7.9129 35 1 2.1254 -4.9047 6.8749 36 1 2.8942 -6.5091 6.8114 37 1 3.4646 -1.5123 4.3470 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16623254_6894386.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:45:07 Heat of formation + Delta-G solvation = -43.123009 kcal Electronic energy + Delta-G solvation = -24013.442062 eV Core-core repulsion = 20273.053107 eV Total energy + Delta-G solvation = -3740.388955 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 313.086 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.41743 -41.45230 -39.59920 -38.70641 -37.53590 -37.19446 -35.21756 -32.53148 -32.30188 -31.15773 -27.41101 -26.95864 -25.65661 -24.20983 -23.34895 -22.42268 -20.91243 -20.56344 -19.81272 -19.33737 -18.97855 -18.29449 -18.20907 -17.77567 -16.77448 -16.74498 -16.35026 -16.08568 -15.59864 -15.29865 -15.12592 -14.67782 -14.48855 -14.06930 -14.02934 -13.76636 -13.65526 -13.58987 -13.53634 -12.67850 -12.66920 -12.61588 -12.51925 -12.44312 -12.23108 -12.18220 -11.85778 -11.78308 -11.62434 -11.06786 -10.75688 -10.30777 -10.01318 -9.47604 -5.03778 -0.64244 -0.35362 0.38245 0.66845 0.69653 0.80621 1.21878 1.54582 1.90122 2.03992 2.23859 2.94932 3.00920 3.30006 3.44338 3.53359 3.58793 3.71111 3.85618 3.88794 3.92573 3.97359 4.10944 4.26323 4.29227 4.35152 4.49279 4.64322 4.69206 4.72245 4.81378 4.83870 4.92706 5.00603 5.04330 5.15635 5.22106 5.36872 6.37644 6.39036 6.40041 7.09490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.544 6.544 2 C -0.045 4.045 3 Si 0.725 3.275 4 C -0.245 4.245 5 C -0.074 4.074 6 C -0.183 4.183 7 C 0.579 3.421 8 O -0.578 6.578 9 N -0.709 5.709 10 C 0.139 3.861 11 H 0.090 0.910 12 C -0.120 4.120 13 C -0.117 4.117 14 C 0.020 3.980 15 H 0.154 0.846 16 N -0.012 5.012 17 O -0.204 6.204 18 O -0.164 6.164 19 C -0.123 4.123 20 C -0.111 4.111 21 C -0.192 4.192 22 S 0.247 5.753 23 H 0.388 0.612 24 H 0.129 0.871 25 H -0.277 1.277 26 H -0.249 1.249 27 H 0.134 0.866 28 H 0.410 0.590 29 H 0.102 0.898 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.114 2.118 3.600 4.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.156 4.156 3 Si 0.626 3.374 4 C -0.362 4.362 5 C -0.104 4.104 6 C -0.201 4.201 7 C 0.366 3.634 8 O -0.458 6.458 9 N -0.362 5.362 10 C 0.035 3.965 11 H 0.108 0.892 12 C -0.159 4.159 13 C -0.155 4.155 14 C -0.077 4.077 15 H 0.172 0.828 16 N 0.507 4.493 17 O -0.416 6.416 18 O -0.388 6.388 19 C -0.161 4.161 20 C -0.149 4.149 21 C -0.330 4.330 22 S 0.513 5.487 23 H 0.238 0.762 24 H 0.147 0.853 25 H -0.202 1.202 26 H -0.174 1.174 27 H 0.151 0.849 28 H 0.248 0.752 29 H 0.120 0.880 30 H 0.087 0.913 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.121 0.879 36 H 0.127 0.873 37 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -0.564 3.125 2.723 4.183 hybrid contribution -1.017 -1.512 0.286 1.844 sum -1.581 1.613 3.008 3.762 Atomic orbital electron populations 1.86615 1.18152 1.80402 1.50100 1.24692 0.83309 1.11289 0.96334 0.94392 0.90609 0.72314 0.80090 1.24820 1.09618 0.98235 1.03538 1.20997 0.98766 0.94954 0.95637 1.20135 1.07777 0.94143 0.98032 1.17826 0.77469 0.87117 0.80970 1.90802 1.45480 1.51038 1.58526 1.45895 1.56794 1.12035 1.21499 1.21109 0.99661 0.81562 0.94180 0.89185 1.21874 0.91540 1.00569 1.01896 1.21827 1.00301 1.04398 0.89010 1.24635 0.79983 1.02430 1.00635 0.82844 1.45429 1.05325 1.00738 0.97822 1.94602 1.46129 1.61829 1.39071 1.94518 1.84462 1.03689 1.56157 1.21965 0.91899 0.99877 1.02342 1.21805 0.95592 1.04703 0.92773 1.26151 1.03091 0.98004 1.05777 1.83081 1.48549 1.07662 1.09368 0.76228 0.85326 1.20247 1.17408 0.84850 0.75185 0.87962 0.91308 0.89563 0.90378 0.88953 0.88707 0.87944 0.87256 0.78233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.25 12.88 -148.98 -1.92 -3.17 16 2 C -0.05 0.05 2.94 71.24 0.21 0.26 16 3 Si 0.73 -2.67 30.92 68.60 2.12 -0.55 16 4 C -0.25 0.22 5.65 24.51 0.14 0.36 16 5 C -0.07 -0.25 9.95 22.67 0.23 -0.02 16 6 C -0.18 -0.15 5.98 -19.87 -0.12 -0.27 16 7 C 0.58 1.79 7.76 86.59 0.67 2.46 16 8 O -0.58 -6.89 16.46 -4.15 -0.07 -6.96 16 9 N -0.71 3.54 4.20 -446.03 -1.87 1.67 16 10 C 0.14 -0.93 2.78 44.99 0.13 -0.81 16 11 H 0.09 -0.26 7.58 -2.38 -0.02 -0.28 16 12 C -0.12 0.76 5.60 30.60 0.17 0.93 16 13 C -0.12 0.69 5.15 30.60 0.16 0.85 16 14 C 0.02 -0.13 2.88 45.00 0.13 0.00 16 15 H 0.15 -1.45 8.09 -2.39 -0.02 -1.47 16 16 N -0.01 -0.03 3.82 -169.38 -0.65 -0.67 16 17 O -0.20 -1.52 19.21 18.88 0.36 -1.16 16 18 O -0.16 -0.77 18.50 18.89 0.35 -0.42 16 19 C -0.12 1.29 5.13 30.60 0.16 1.45 16 20 C -0.11 1.36 5.61 30.59 0.17 1.53 16 21 C -0.19 1.06 10.38 67.30 0.70 1.76 16 22 S 0.25 -1.40 20.20 -56.49 -1.14 -2.55 16 23 H 0.39 -1.54 8.70 -74.06 -0.64 -2.19 16 24 H 0.13 -0.26 7.96 -2.39 -0.02 -0.28 16 25 H -0.28 -0.96 7.11 99.48 0.71 -0.25 16 26 H -0.25 0.46 7.11 99.48 0.71 1.17 16 27 H 0.13 0.95 8.06 -2.91 -0.02 0.93 16 28 H 0.41 -4.09 5.36 -92.70 -0.50 -4.59 16 29 H 0.10 -0.99 8.14 -2.39 -0.02 -1.01 16 30 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 31 H 0.09 -0.40 7.49 -2.39 -0.02 -0.41 16 32 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 33 H 0.09 -1.03 6.39 -2.39 -0.02 -1.05 16 34 H 0.09 -1.01 8.14 -2.39 -0.02 -1.03 16 35 H 0.10 -1.36 8.14 -2.39 -0.02 -1.38 16 36 H 0.11 -1.62 8.14 -2.39 -0.02 -1.64 16 37 H 0.20 -2.48 7.01 -2.91 -0.02 -2.50 16 Total: 0.00 -21.69 325.70 -0.06 -21.75 By element: Atomic # 1 Polarization: -16.46 SS G_CDS: 0.02 Total: -16.44 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: 2.74 Total: 8.50 kcal Atomic # 7 Polarization: 3.52 SS G_CDS: -2.52 Total: 1.00 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: -1.28 Total: -11.71 kcal Atomic # 14 Polarization: -2.67 SS G_CDS: 2.12 Total: -0.55 kcal Atomic # 16 Polarization: -1.40 SS G_CDS: -1.14 Total: -2.55 kcal Total: -21.69 -0.06 -21.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16623254_6894386.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.372 kcal (2) G-P(sol) polarization free energy of solvation -21.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds