Wall clock time and date at job start Sun Mar 7 2021 05:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86303 * 109.47036 * 2 1 4 4 C 1.50702 * 109.47388 * 119.99817 * 2 1 3 5 5 C 1.35448 * 126.06688 * 245.02843 * 4 2 1 6 6 N 1.35538 * 108.87235 * 179.74394 * 5 4 2 7 7 C 1.37647 * 108.64077 * 0.37753 * 6 5 4 8 8 C 1.46684 * 126.23513 * 179.88917 * 7 6 5 9 9 O 1.21690 * 120.00041 * 179.69143 * 8 7 6 10 10 N 1.34778 * 119.99666 * 359.68632 * 8 7 6 11 11 C 1.46499 * 119.99771 * 179.97438 * 10 8 7 12 12 H 1.08992 * 109.47397 * 325.00275 * 11 10 8 13 13 C 1.53002 * 109.46799 * 85.00174 * 11 10 8 14 14 C 1.52997 * 109.46817 * 179.97438 * 13 11 10 15 15 C 1.53005 * 109.47452 * 300.00239 * 14 13 11 16 16 H 1.09002 * 109.46935 * 300.00125 * 15 14 13 17 17 C 1.50703 * 109.47304 * 180.02562 * 15 14 13 18 18 N 1.30522 * 126.34537 * 94.68826 * 17 15 14 19 19 N 1.28597 * 109.66981 * 179.82632 * 18 17 15 20 20 C 1.30517 * 109.66921 * 0.44387 * 19 18 17 21 21 N 1.35486 * 126.34362 * 274.99699 * 17 15 14 22 22 C 1.52999 * 109.47159 * 59.99536 * 15 14 13 23 23 C 1.52997 * 109.47317 * 300.00546 * 22 15 14 24 24 C 1.37880 * 107.53436 * 359.62446 * 7 6 5 25 25 H 0.96703 * 114.00023 * 300.00092 * 1 2 3 26 26 H 1.08994 * 109.47314 * 240.00153 * 2 1 3 27 27 H 1.48499 * 109.99809 * 299.99908 * 3 2 1 28 28 H 1.48500 * 109.99870 * 61.31832 * 3 2 1 29 29 H 1.08004 * 125.56846 * 359.93656 * 5 4 2 30 30 H 0.96993 * 125.68098 * 180.25983 * 6 5 4 31 31 H 0.97006 * 119.99662 * 0.02562 * 10 8 7 32 32 H 1.08993 * 109.47662 * 299.99952 * 13 11 10 33 33 H 1.09002 * 109.47075 * 60.00457 * 13 11 10 34 34 H 1.09002 * 109.47153 * 60.00231 * 14 13 11 35 35 H 1.09001 * 109.47289 * 180.02562 * 14 13 11 36 36 H 1.08000 * 126.33858 * 179.72911 * 20 19 18 37 37 H 0.97001 * 126.98562 * 0.02562 * 21 17 15 38 38 H 1.08996 * 109.46929 * 179.97438 * 22 15 14 39 39 H 1.09002 * 109.46716 * 60.00455 * 22 15 14 40 40 H 1.09002 * 109.47153 * 299.99641 * 23 22 15 41 41 H 1.09001 * 109.46832 * 179.97438 * 23 22 15 42 42 H 1.08004 * 126.45553 * 180.25962 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 2.6330 -0.1496 2.2444 6 7 2.9003 -1.1015 3.1715 7 6 2.3684 -2.2960 2.7417 8 6 2.4357 -3.5795 3.4486 9 8 1.9184 -4.5688 2.9643 10 7 3.0707 -3.6631 4.6345 11 6 3.1375 -4.9448 5.3409 12 1 2.2148 -5.5003 5.1737 13 6 4.3235 -5.7557 4.8148 14 6 4.3936 -7.0941 5.5529 15 6 4.5730 -6.8414 7.0512 16 1 5.4957 -6.2857 7.2180 17 6 4.6427 -8.1597 7.7782 18 7 5.7283 -8.8072 8.1034 19 7 5.4169 -9.8932 8.7177 20 6 4.1184 -9.9924 8.8038 21 7 3.5900 -8.8951 8.2100 22 6 3.3871 -6.0304 7.5772 23 6 3.3169 -4.6921 6.8391 24 6 1.7554 -2.0652 1.5284 25 1 -0.3933 0.4417 0.7651 26 1 1.7923 -0.5138 -0.8899 27 1 1.5615 2.4679 -1.2085 28 1 1.5878 2.4586 1.2242 29 1 2.9284 0.8874 2.3057 30 1 3.3870 -0.9642 3.9992 31 1 3.4828 -2.8743 5.0206 32 1 4.1959 -5.9354 3.7473 33 1 5.2463 -5.2002 4.9820 34 1 3.4709 -7.6498 5.3861 35 1 5.2388 -7.6717 5.1785 36 1 3.5673 -10.7997 9.2631 37 1 2.6491 -8.6801 8.1134 38 1 3.5147 -5.8508 8.6447 39 1 2.4643 -6.5861 7.4104 40 1 4.2397 -4.1363 7.0059 41 1 2.4718 -4.1145 7.2136 42 1 1.2367 -2.7935 0.9225 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16624780_10543058.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:32:14 Heat of formation + Delta-G solvation = 42.837328 kcal Electronic energy + Delta-G solvation = -25871.850924 eV Core-core repulsion = 22047.822516 eV Total energy + Delta-G solvation = -3824.028409 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.15822 -42.47402 -40.80228 -39.17143 -37.79392 -35.83355 -34.61127 -32.89136 -32.23743 -31.89933 -30.80609 -29.47225 -26.55552 -25.10125 -24.07209 -23.83839 -23.05243 -22.07843 -21.38406 -21.01943 -20.65303 -19.84322 -19.31319 -17.74693 -17.31581 -17.01795 -16.87666 -16.46603 -16.37654 -16.10521 -15.78677 -15.59024 -15.20695 -15.05883 -14.86689 -14.50945 -14.47749 -14.08441 -13.85334 -13.68566 -13.43875 -13.30698 -12.85552 -12.48721 -12.44574 -12.32832 -12.22161 -11.84786 -11.80358 -11.68715 -11.50458 -11.37142 -11.23268 -10.47583 -10.29077 -10.22548 -9.95462 -9.28464 -4.82958 0.37544 0.84729 1.40037 1.56216 1.68114 1.83717 1.87733 1.93895 2.09834 2.15793 2.27377 3.15625 3.53562 3.57025 3.60066 3.80576 3.87490 3.97146 4.00019 4.08911 4.18103 4.18615 4.27548 4.31180 4.38027 4.38617 4.42053 4.49852 4.62412 4.73879 4.78323 4.89369 4.98767 5.00367 5.01540 5.04091 5.05872 5.14686 5.23899 5.25752 5.41016 5.59895 5.74485 6.23593 6.37105 6.53839 6.63919 7.08126 7.69755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.061 4.061 3 Si 0.788 3.212 4 C -0.225 4.225 5 C 0.060 3.940 6 N -0.514 5.514 7 C -0.068 4.068 8 C 0.589 3.411 9 O -0.575 6.575 10 N -0.710 5.710 11 C 0.146 3.854 12 H 0.073 0.927 13 C -0.122 4.122 14 C -0.101 4.101 15 C 0.004 3.996 16 H 0.110 0.890 17 C 0.191 3.809 18 N -0.344 5.344 19 N -0.355 5.355 20 C 0.169 3.831 21 N -0.568 5.568 22 C -0.109 4.109 23 C -0.115 4.115 24 C -0.107 4.107 25 H 0.384 0.616 26 H 0.107 0.893 27 H -0.315 1.315 28 H -0.266 1.266 29 H 0.213 0.787 30 H 0.438 0.562 31 H 0.412 0.588 32 H 0.050 0.950 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.261 0.739 37 H 0.446 0.554 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.249 7.306 5.389 9.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.170 4.170 3 Si 0.692 3.308 4 C -0.231 4.231 5 C -0.079 4.079 6 N -0.111 5.111 7 C -0.181 4.181 8 C 0.378 3.622 9 O -0.454 6.454 10 N -0.361 5.361 11 C 0.042 3.958 12 H 0.091 0.909 13 C -0.160 4.160 14 C -0.141 4.141 15 C -0.017 4.017 16 H 0.128 0.872 17 C -0.080 4.080 18 N -0.184 5.184 19 N -0.194 5.194 20 C -0.121 4.121 21 N -0.183 5.183 22 C -0.147 4.147 23 C -0.153 4.153 24 C -0.134 4.134 25 H 0.233 0.767 26 H 0.125 0.875 27 H -0.244 1.244 28 H -0.192 1.192 29 H 0.229 0.771 30 H 0.279 0.721 31 H 0.249 0.751 32 H 0.068 0.932 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.277 0.723 37 H 0.289 0.711 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.111 0.889 41 H 0.107 0.893 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.995 6.655 4.903 8.325 hybrid contribution -2.646 -0.092 0.386 2.676 sum -1.651 6.562 5.288 8.588 Atomic orbital electron populations 1.86573 1.19493 1.80550 1.49993 1.24752 0.82577 1.12240 0.97392 0.94249 0.89423 0.70421 0.76739 1.19865 1.08876 0.94335 1.00011 1.22362 1.00576 0.95902 0.89037 1.41845 1.43094 1.06347 1.19832 1.20150 1.11741 0.86818 0.99410 1.17234 0.77690 0.86381 0.80929 1.90851 1.48822 1.37917 1.67803 1.45766 1.56631 1.13209 1.20517 1.21056 0.98758 0.83742 0.92257 0.90916 1.21836 0.99199 0.95672 0.99339 1.21451 1.02376 0.97489 0.92750 1.19826 1.02511 0.86558 0.92821 0.87183 1.25209 0.83543 0.98353 1.00858 1.74187 1.25580 1.03134 1.15488 1.74192 1.13410 1.13852 1.17922 1.27297 0.91822 0.93531 0.99496 1.44076 1.11945 1.17982 1.44264 1.21570 0.96734 0.95594 1.00840 1.21731 1.04728 0.97679 0.91129 1.21227 1.00452 0.96568 0.95113 0.76678 0.87536 1.24367 1.19179 0.77054 0.72064 0.75103 0.93159 0.89860 0.91683 0.92031 0.72293 0.71071 0.89587 0.90564 0.88900 0.89310 0.85964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.48 12.88 -148.98 -1.92 -4.40 16 2 C -0.06 0.01 3.02 71.24 0.22 0.22 16 3 Si 0.79 -3.88 30.60 68.60 2.10 -1.79 16 4 C -0.22 0.13 5.43 -20.12 -0.11 0.03 16 5 C 0.06 -0.45 10.45 83.48 0.87 0.42 16 6 N -0.51 4.32 5.99 -183.61 -1.10 3.22 16 7 C -0.07 -0.05 7.06 40.35 0.28 0.23 16 8 C 0.59 1.91 7.75 86.45 0.67 2.58 16 9 O -0.57 -7.54 16.55 -4.32 -0.07 -7.61 16 10 N -0.71 4.03 5.07 -446.50 -2.27 1.77 16 11 C 0.15 -0.80 2.45 44.99 0.11 -0.69 16 12 H 0.07 -0.05 7.58 -2.39 -0.02 -0.07 16 13 C -0.12 0.42 5.49 30.59 0.17 0.59 16 14 C -0.10 0.31 5.19 30.60 0.16 0.46 16 15 C 0.00 -0.02 2.66 -11.54 -0.03 -0.05 16 16 H 0.11 -0.52 8.14 -2.39 -0.02 -0.54 16 17 C 0.19 0.22 6.99 137.98 0.96 1.18 16 18 N -0.34 -3.67 12.21 -50.16 -0.61 -4.28 16 19 N -0.36 -3.63 12.21 -59.99 -0.73 -4.36 16 20 C 0.17 -0.15 13.19 180.11 2.37 2.22 16 21 N -0.57 2.59 5.96 -189.87 -1.13 1.46 16 22 C -0.11 1.12 4.97 30.59 0.15 1.27 16 23 C -0.11 1.32 5.39 30.59 0.16 1.48 16 24 C -0.11 -0.54 10.59 22.57 0.24 -0.30 16 25 H 0.38 -0.82 8.70 -74.06 -0.64 -1.46 16 26 H 0.11 0.07 7.96 -2.39 -0.02 0.05 16 27 H -0.31 -1.48 7.11 99.48 0.71 -0.77 16 28 H -0.27 1.03 7.11 99.48 0.71 1.74 16 29 H 0.21 -3.21 6.21 -2.91 -0.02 -3.23 16 30 H 0.44 -7.23 8.19 -92.71 -0.76 -7.99 16 31 H 0.41 -5.41 7.73 -92.70 -0.72 -6.13 16 32 H 0.05 0.13 8.14 -2.39 -0.02 0.11 16 33 H 0.08 -0.48 8.14 -2.39 -0.02 -0.50 16 34 H 0.06 -0.17 8.14 -2.39 -0.02 -0.19 16 35 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 36 H 0.26 -2.81 8.06 -2.91 -0.02 -2.83 16 37 H 0.45 -5.46 8.29 -92.71 -0.77 -6.23 16 38 H 0.09 -0.93 8.14 -2.39 -0.02 -0.95 16 39 H 0.08 -0.90 7.52 -2.39 -0.02 -0.92 16 40 H 0.09 -1.31 8.14 -2.39 -0.02 -1.33 16 41 H 0.09 -1.13 8.14 -2.39 -0.02 -1.15 16 42 H 0.12 1.18 8.06 -2.91 -0.02 1.16 16 Total: 0.00 -36.31 349.74 -1.25 -37.56 By element: Atomic # 1 Polarization: -29.46 SS G_CDS: -1.75 Total: -31.21 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: 6.23 Total: 9.65 kcal Atomic # 7 Polarization: 3.64 SS G_CDS: -5.84 Total: -2.20 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: -1.99 Total: -12.01 kcal Atomic # 14 Polarization: -3.88 SS G_CDS: 2.10 Total: -1.79 kcal Total: -36.31 -1.25 -37.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16624780_10543058.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.394 kcal (2) G-P(sol) polarization free energy of solvation -36.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds