Wall clock time and date at job start Sun Mar 7 2021 05:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35536 * 125.67507 * 2 1 4 4 C 1.35453 * 108.86796 * 179.97438 * 3 2 1 5 5 C 1.50705 * 126.06259 * 179.97438 * 4 3 2 6 6 O 1.42897 * 109.47278 * 245.02287 * 5 4 3 7 7 Si 1.86293 * 109.47269 * 5.02943 * 5 4 3 8 8 C 1.39826 * 107.86758 * 0.23882 * 4 3 2 9 9 C 1.37649 * 125.68025 * 179.97438 * 2 1 3 10 10 C 1.46678 * 126.23394 * 0.02562 * 9 2 1 11 11 O 1.21702 * 119.99904 * 5.37747 * 10 9 2 12 12 N 1.34772 * 120.00215 * 185.38507 * 10 9 2 13 13 C 1.46507 * 120.00137 * 185.18540 * 12 10 9 14 14 H 1.09007 * 109.46632 * 324.99392 * 13 12 10 15 15 C 1.52988 * 109.47193 * 84.99503 * 13 12 10 16 16 C 1.53008 * 109.46805 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.46824 * 299.99798 * 16 15 13 18 18 H 1.09007 * 109.47399 * 299.99858 * 17 16 15 19 19 C 1.50706 * 109.46882 * 180.02562 * 17 16 15 20 20 N 1.30518 * 126.34489 * 144.68976 * 19 17 16 21 21 N 1.28603 * 109.66556 * 179.82233 * 20 19 17 22 22 C 1.30513 * 109.67508 * 0.44808 * 21 20 19 23 23 N 1.35489 * 107.31181 * 359.73013 * 22 21 20 24 24 C 1.52990 * 109.47127 * 60.00122 * 17 16 15 25 25 C 1.52997 * 109.46821 * 204.99537 * 13 12 10 26 26 H 1.08992 * 109.47327 * 86.02858 * 1 2 3 27 27 H 1.09008 * 109.46938 * 206.02557 * 1 2 3 28 28 H 1.09006 * 109.47380 * 326.02269 * 1 2 3 29 29 H 1.07994 * 125.56321 * 359.93823 * 3 2 1 30 30 H 1.09004 * 109.46832 * 125.02529 * 5 4 3 31 31 H 0.96699 * 113.99373 * 60.00511 * 6 5 4 32 32 H 1.48505 * 110.00519 * 58.67581 * 7 5 4 33 33 H 1.48505 * 110.00231 * 179.97438 * 7 5 4 34 34 H 1.08002 * 126.45923 * 179.76028 * 8 4 3 35 35 H 0.96999 * 119.99814 * 5.17434 * 12 10 9 36 36 H 1.09009 * 109.47302 * 299.99926 * 15 13 12 37 37 H 1.08997 * 109.47700 * 59.99875 * 15 13 12 38 38 H 1.09008 * 109.46864 * 180.02562 * 16 15 13 39 39 H 1.08998 * 109.47283 * 59.99941 * 16 15 13 40 40 H 1.08004 * 126.34526 * 179.73364 * 22 21 20 41 41 H 0.97000 * 126.98283 * 180.02562 * 23 22 21 42 42 H 1.09009 * 109.47165 * 179.97438 * 24 17 16 43 43 H 1.09002 * 109.47270 * 60.00540 * 24 17 16 44 44 H 1.08998 * 109.47307 * 299.99654 * 25 13 12 45 45 H 1.09008 * 109.47091 * 60.00045 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1010 0.0000 4 6 3.5521 0.7093 0.0006 5 6 4.7536 1.6190 0.0002 6 8 5.4771 1.4522 -1.2207 7 14 4.1926 3.3889 0.1529 8 6 3.5780 -0.6887 -0.0046 9 6 2.2678 -1.1181 0.0005 10 6 1.8125 -2.5124 0.0006 11 8 0.6261 -2.7651 -0.0986 12 7 2.7078 -3.5137 0.1106 13 6 2.2671 -4.9063 -0.0032 14 1 1.2737 -5.0098 0.4335 15 6 2.2199 -5.3073 -1.4788 16 6 1.7590 -6.7614 -1.5976 17 6 2.7399 -7.6696 -0.8535 18 1 3.7334 -7.5665 -1.2901 19 6 2.2863 -9.1020 -0.9710 20 7 3.0559 -10.1512 -1.0730 21 7 2.3332 -11.2121 -1.1507 22 6 1.0698 -10.8871 -1.1114 23 7 1.0038 -9.5387 -0.9963 24 6 2.7872 -7.2686 0.6222 25 6 3.2485 -5.8141 0.7408 26 1 -0.3633 0.0712 -1.0251 27 1 -0.3633 -0.9235 0.4509 28 1 -0.3634 0.8522 0.5743 29 1 1.9081 2.1236 -0.0009 30 1 5.3991 1.3687 0.8422 31 1 4.9632 1.6580 -2.0136 32 1 3.4117 3.5683 1.4032 33 1 5.3683 4.2962 0.1543 34 1 4.4583 -1.3143 -0.0092 35 1 3.6440 -3.3124 0.2650 36 1 1.5207 -4.6604 -2.0090 37 1 3.2131 -5.2037 -1.9156 38 1 1.7257 -7.0473 -2.6490 39 1 0.7656 -6.8646 -1.1611 40 1 0.2321 -11.5669 -1.1614 41 1 0.2015 -8.9962 -0.9424 42 1 3.4857 -7.9160 1.1524 43 1 1.7938 -7.3718 1.0588 44 1 4.2418 -5.7106 0.3042 45 1 3.2821 -5.5284 1.7923 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16624780_10803934.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:32:18 Heat of formation + Delta-G solvation = 50.979872 kcal Electronic energy + Delta-G solvation = -28151.766782 eV Core-core repulsion = 24172.553842 eV Total energy + Delta-G solvation = -3979.212940 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.15355 -42.54503 -40.77516 -39.13308 -37.64758 -35.83491 -34.62625 -33.87265 -32.59780 -31.89255 -30.96450 -29.35039 -28.25474 -25.75923 -24.97804 -24.18151 -23.56041 -23.04176 -22.05439 -21.25306 -21.03064 -20.29344 -19.30829 -18.81784 -17.70078 -17.32783 -16.88517 -16.78883 -16.67420 -16.38034 -16.03041 -15.78523 -15.59357 -15.35855 -15.09850 -15.00298 -14.79750 -14.42848 -14.11420 -14.07094 -13.69498 -13.48286 -13.30316 -13.25639 -13.11295 -12.83643 -12.42623 -12.30287 -12.25047 -12.21122 -11.92512 -11.84285 -11.68599 -11.52413 -11.31057 -11.09172 -10.29250 -10.26729 -10.16577 -9.68828 -9.24890 -4.94293 0.41292 0.85292 1.42817 1.53502 1.59278 1.74068 1.84408 1.89063 2.05339 2.28297 2.32916 3.16070 3.50361 3.64221 3.68298 3.75301 3.84247 3.85154 3.97837 4.05540 4.11715 4.19905 4.25061 4.31150 4.31410 4.38591 4.39433 4.41710 4.42662 4.49902 4.63645 4.67939 4.73624 4.77406 4.78869 4.99141 4.99606 5.03136 5.07510 5.15022 5.20063 5.24653 5.29259 5.45440 5.68485 5.90144 6.17779 6.23308 6.46648 6.91252 7.11921 7.70103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.413 5.413 3 C 0.034 3.966 4 C -0.221 4.221 5 C -0.036 4.036 6 O -0.560 6.560 7 Si 0.777 3.223 8 C -0.113 4.113 9 C -0.079 4.079 10 C 0.589 3.411 11 O -0.580 6.580 12 N -0.705 5.705 13 C 0.149 3.851 14 H 0.077 0.923 15 C -0.121 4.121 16 C -0.106 4.106 17 C 0.002 3.998 18 H 0.108 0.892 19 C 0.192 3.808 20 N -0.343 5.343 21 N -0.355 5.355 22 C 0.169 3.831 23 N -0.569 5.569 24 C -0.101 4.101 25 C -0.117 4.117 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.109 0.891 29 H 0.201 0.799 30 H 0.102 0.898 31 H 0.393 0.607 32 H -0.284 1.284 33 H -0.306 1.306 34 H 0.156 0.844 35 H 0.414 0.586 36 H 0.057 0.943 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.262 0.738 41 H 0.445 0.555 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.088 0.912 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.346 5.175 -0.627 7.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.085 5.085 3 C -0.103 4.103 4 C -0.227 4.227 5 C -0.147 4.147 6 O -0.368 6.368 7 Si 0.684 3.316 8 C -0.140 4.140 9 C -0.192 4.192 10 C 0.378 3.622 11 O -0.463 6.463 12 N -0.355 5.355 13 C 0.045 3.955 14 H 0.095 0.905 15 C -0.160 4.160 16 C -0.145 4.145 17 C -0.018 4.018 18 H 0.126 0.874 19 C -0.079 4.079 20 N -0.183 5.183 21 N -0.193 5.193 22 C -0.121 4.121 23 N -0.183 5.183 24 C -0.140 4.140 25 C -0.155 4.155 26 H 0.105 0.895 27 H 0.104 0.896 28 H 0.127 0.873 29 H 0.218 0.782 30 H 0.119 0.881 31 H 0.242 0.758 32 H -0.211 1.211 33 H -0.234 1.234 34 H 0.173 0.827 35 H 0.251 0.749 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.277 0.723 41 H 0.289 0.711 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.107 0.893 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.716 4.509 0.067 6.525 hybrid contribution -0.922 0.303 0.461 1.075 sum -5.638 4.812 0.528 7.431 Atomic orbital electron populations 1.22433 0.74846 1.05759 1.04849 1.44034 1.07638 1.04828 1.51955 1.22319 0.89748 0.92544 1.05689 1.19897 0.94200 0.94833 1.13763 1.24448 0.92525 1.08248 0.89467 1.86446 1.42152 1.92174 1.16018 0.94017 0.80264 0.72587 0.84741 1.21417 0.94368 0.95189 1.03002 1.20115 0.90875 0.87727 1.20449 1.17140 0.85328 0.84170 0.75543 1.90769 1.17455 1.85314 1.52712 1.45647 1.11747 1.05401 1.72753 1.21039 0.99324 0.79135 0.96002 0.90465 1.21823 1.02694 0.95469 0.95982 1.21530 0.98501 0.93595 1.00849 1.19823 1.01350 0.82490 0.98180 0.87415 1.25186 0.81462 0.98910 1.02324 1.74193 1.28179 0.95373 1.20529 1.74191 1.02331 1.22266 1.20537 1.27295 0.99213 0.84016 1.01605 1.44090 1.09981 1.08805 1.55458 1.21472 1.02790 0.96031 0.93684 1.21749 0.99362 0.92955 1.01450 0.89505 0.89622 0.87296 0.78244 0.88108 0.75762 1.21056 1.23385 0.82662 0.74886 0.92427 0.90233 0.90770 0.90619 0.72280 0.71131 0.90958 0.91052 0.89327 0.90032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.18 10.64 127.77 1.36 1.18 16 2 N -0.41 -0.12 3.16 -534.31 -1.69 -1.81 16 3 C 0.03 -0.10 9.94 83.48 0.83 0.73 16 4 C -0.22 0.22 5.43 -20.12 -0.11 0.11 16 5 C -0.04 0.06 3.02 71.24 0.22 0.28 16 6 O -0.56 0.26 12.88 -148.98 -1.92 -1.66 16 7 Si 0.78 -3.02 30.60 68.60 2.10 -0.92 16 8 C -0.11 -0.02 10.28 22.57 0.23 0.21 16 9 C -0.08 -0.18 6.88 40.35 0.28 0.10 16 10 C 0.59 2.04 7.73 86.45 0.67 2.71 16 11 O -0.58 -5.30 14.28 -4.35 -0.06 -5.36 16 12 N -0.70 1.90 5.05 -446.50 -2.26 -0.36 16 13 C 0.15 -0.62 2.50 44.99 0.11 -0.51 16 14 H 0.08 -0.05 7.51 -2.38 -0.02 -0.06 16 15 C -0.12 0.54 5.49 30.59 0.17 0.71 16 16 C -0.11 0.66 4.97 30.60 0.15 0.81 16 17 C 0.00 -0.01 2.66 -11.54 -0.03 -0.04 16 18 H 0.11 -0.33 8.14 -2.38 -0.02 -0.35 16 19 C 0.19 0.33 6.99 137.98 0.96 1.29 16 20 N -0.34 -3.75 12.21 -50.15 -0.61 -4.36 16 21 N -0.35 -3.70 12.21 -59.99 -0.73 -4.43 16 22 C 0.17 -0.10 13.19 180.12 2.37 2.28 16 23 N -0.57 2.24 5.96 -189.86 -1.13 1.11 16 24 C -0.10 0.55 5.19 30.61 0.16 0.71 16 25 C -0.12 0.85 5.39 30.61 0.17 1.01 16 26 H 0.09 -0.39 8.14 -2.39 -0.02 -0.41 16 27 H 0.09 0.13 6.22 -2.38 -0.01 0.12 16 28 H 0.11 -0.91 8.14 -2.38 -0.02 -0.93 16 29 H 0.20 -1.92 6.21 -2.91 -0.02 -1.94 16 30 H 0.10 -0.01 7.96 -2.38 -0.02 -0.03 16 31 H 0.39 -3.22 8.70 -74.06 -0.64 -3.87 16 32 H -0.28 -0.15 7.11 99.48 0.71 0.56 16 33 H -0.31 -1.39 7.11 99.48 0.71 -0.68 16 34 H 0.16 -0.49 7.49 -2.91 -0.02 -0.51 16 35 H 0.41 -2.84 7.56 -92.71 -0.70 -3.54 16 36 H 0.06 -0.02 8.14 -2.38 -0.02 -0.04 16 37 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 38 H 0.07 -0.40 8.14 -2.38 -0.02 -0.42 16 39 H 0.08 -0.62 7.52 -2.39 -0.02 -0.64 16 40 H 0.26 -2.74 8.06 -2.91 -0.02 -2.76 16 41 H 0.45 -5.04 8.29 -92.71 -0.77 -5.81 16 42 H 0.07 -0.22 8.14 -2.38 -0.02 -0.24 16 43 H 0.07 -0.44 8.14 -2.39 -0.02 -0.45 16 44 H 0.09 -0.80 8.14 -2.39 -0.02 -0.82 16 45 H 0.08 -0.59 8.14 -2.38 -0.02 -0.61 16 Total: 0.00 -30.31 367.81 0.21 -30.10 By element: Atomic # 1 Polarization: -22.87 SS G_CDS: -1.03 Total: -23.89 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: 7.54 Total: 11.59 kcal Atomic # 7 Polarization: -3.42 SS G_CDS: -6.42 Total: -9.85 kcal Atomic # 8 Polarization: -5.04 SS G_CDS: -1.98 Total: -7.02 kcal Atomic # 14 Polarization: -3.02 SS G_CDS: 2.10 Total: -0.92 kcal Total: -30.31 0.21 -30.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16624780_10803934.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.077 kcal (2) G-P(sol) polarization free energy of solvation -30.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds