Wall clock time and date at job start Sun Mar 7 2021 05:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37657 * 125.67729 * 2 1 4 4 C 1.46687 * 126.23125 * 359.97016 * 3 2 1 5 5 O 1.21692 * 119.99786 * 5.11087 * 4 3 2 6 6 N 1.34777 * 119.99952 * 185.10839 * 4 3 2 7 7 C 1.46496 * 119.99610 * 185.79948 * 6 4 3 8 8 H 1.09004 * 109.47579 * 34.99926 * 7 6 4 9 9 C 1.53001 * 109.46769 * 154.99780 * 7 6 4 10 10 C 1.53002 * 109.46982 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.47294 * 300.00026 * 10 9 7 12 12 H 1.08999 * 109.46729 * 300.00031 * 11 10 9 13 13 C 1.50698 * 109.46926 * 179.97438 * 11 10 9 14 14 N 1.30521 * 126.34423 * 94.69245 * 13 11 10 15 15 N 1.28597 * 109.67341 * 179.81851 * 14 13 11 16 16 C 1.30525 * 109.67101 * 0.44973 * 15 14 13 17 17 N 1.35486 * 126.34914 * 274.99906 * 13 11 10 18 18 C 1.52996 * 109.46839 * 60.00191 * 11 10 9 19 19 C 1.53002 * 109.47154 * 274.99588 * 7 6 4 20 20 C 1.37872 * 107.53569 * 179.97438 * 3 2 1 21 21 C 1.39837 * 107.08348 * 359.97438 * 20 3 2 22 22 C 1.35455 * 107.86364 * 359.73884 * 21 20 3 23 23 C 1.50702 * 125.56264 * 180.25715 * 22 21 20 24 24 O 1.42896 * 109.46969 * 150.19592 * 23 22 21 25 25 Si 1.86305 * 109.46946 * 30.19799 * 23 22 21 26 26 H 1.09001 * 109.46713 * 95.91438 * 1 2 3 27 27 H 1.08997 * 109.47309 * 335.91328 * 1 2 3 28 28 H 1.09003 * 109.46639 * 215.91235 * 1 2 3 29 29 H 0.96993 * 119.99548 * 5.79382 * 6 4 3 30 30 H 1.08998 * 109.47403 * 300.00066 * 9 7 6 31 31 H 1.08998 * 109.47609 * 59.99957 * 9 7 6 32 32 H 1.09004 * 109.47225 * 60.00232 * 10 9 7 33 33 H 1.09000 * 109.47152 * 180.02562 * 10 9 7 34 34 H 1.07996 * 126.34626 * 179.72685 * 16 15 14 35 35 H 0.97006 * 126.98350 * 0.02562 * 17 13 11 36 36 H 1.08998 * 109.47857 * 59.99892 * 18 11 10 37 37 H 1.09003 * 109.47187 * 180.02562 * 18 11 10 38 38 H 1.08999 * 109.46729 * 300.00379 * 19 7 6 39 39 H 1.08994 * 109.46612 * 60.00450 * 19 7 6 40 40 H 1.07996 * 126.45721 * 180.02562 * 20 3 2 41 41 H 1.08002 * 126.06481 * 179.97438 * 21 20 3 42 42 H 1.09005 * 109.47185 * 270.19950 * 23 22 21 43 43 H 0.96701 * 113.99914 * 179.97438 * 24 23 22 44 44 H 1.48501 * 109.99657 * 59.99904 * 25 23 22 45 45 H 1.48496 * 109.99679 * 181.31878 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2679 1.1182 0.0000 4 6 1.8123 2.5126 -0.0006 5 8 0.6255 2.7650 0.0927 6 7 2.7082 3.5141 -0.1045 7 6 2.2688 4.9059 0.0223 8 1 1.4616 4.9670 0.7522 9 6 3.4425 5.7709 0.4863 10 6 2.9838 7.2245 0.6181 11 6 2.4848 7.7269 -0.7382 12 1 3.2923 7.6654 -1.4678 13 6 2.0325 9.1585 -0.6081 14 7 2.7471 10.2214 -0.8596 15 7 2.0439 11.2765 -0.6452 16 6 0.8518 10.9348 -0.2380 17 7 0.8106 9.5809 -0.2029 18 6 1.3112 6.8619 -1.2020 19 6 1.7695 5.4086 -1.3337 20 6 3.5780 0.6889 0.0006 21 6 3.5522 -0.7092 0.0015 22 6 2.2555 -1.1008 0.0074 23 6 1.7710 -2.5278 0.0159 24 8 0.5129 -2.5996 0.6897 25 14 3.0115 -3.5996 0.9009 26 1 -0.3633 -0.1059 -1.0222 27 1 -0.3634 0.9381 0.4194 28 1 -0.3633 -0.8324 0.6028 29 1 3.6438 3.3133 -0.2631 30 1 3.7983 5.4127 1.4523 31 1 4.2498 5.7098 -0.2435 32 1 2.1764 7.2860 1.3478 33 1 3.8200 7.8409 0.9482 34 1 0.0474 11.6066 0.0225 35 1 0.0589 9.0267 0.0594 36 1 0.5038 6.9233 -0.4724 37 1 0.9560 7.2195 -2.1685 38 1 2.5768 5.3474 -2.0635 39 1 0.9334 4.7924 -1.6641 40 1 4.4583 1.3145 0.0011 41 1 4.4134 -1.3610 0.0018 42 1 1.6544 -2.8780 -1.0098 43 1 0.1401 -3.4908 0.7328 44 1 3.1794 -3.1323 2.3004 45 1 2.5607 -5.0144 0.8883 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16624780_10803936.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:32:21 Heat of formation + Delta-G solvation = 52.169952 kcal Electronic energy + Delta-G solvation = -28232.955451 eV Core-core repulsion = 24253.794116 eV Total energy + Delta-G solvation = -3979.161335 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.15262 -42.54133 -40.78781 -39.13833 -37.87395 -35.84478 -34.62361 -33.79104 -32.63123 -31.88190 -31.38506 -29.57569 -27.48020 -26.76428 -24.66378 -24.07982 -23.35778 -22.91566 -22.10736 -21.35168 -21.04921 -20.19576 -19.30906 -18.75979 -18.51602 -17.32936 -17.03734 -16.85133 -16.64029 -16.36643 -16.19986 -15.90630 -15.47199 -15.35976 -15.06936 -14.87625 -14.61348 -14.40046 -14.08771 -13.97499 -13.71494 -13.62854 -13.29069 -13.17441 -13.03915 -12.82217 -12.57153 -12.40587 -12.28253 -12.19992 -12.09355 -11.84354 -11.67438 -11.52132 -11.32346 -11.06464 -10.74733 -10.26254 -10.15244 -9.71922 -9.03792 -4.87279 0.37966 0.85284 1.19077 1.59217 1.69654 1.78622 1.84282 1.89253 2.03938 2.34272 2.36953 3.09299 3.16660 3.52019 3.64902 3.66128 3.78970 3.85414 3.97984 4.02310 4.12277 4.20802 4.29854 4.31473 4.32342 4.38772 4.39875 4.41965 4.43549 4.50500 4.59390 4.64936 4.78245 4.79897 4.99956 5.00540 5.04323 5.08478 5.12495 5.16344 5.18995 5.26646 5.30658 5.47572 5.79237 6.03573 6.15999 6.22506 6.48308 6.52644 7.14807 7.70036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.408 5.408 3 C -0.090 4.090 4 C 0.588 3.412 5 O -0.586 6.586 6 N -0.701 5.701 7 C 0.150 3.850 8 H 0.071 0.929 9 C -0.116 4.116 10 C -0.101 4.101 11 C 0.003 3.997 12 H 0.110 0.890 13 C 0.192 3.808 14 N -0.342 5.342 15 N -0.354 5.354 16 C 0.168 3.832 17 N -0.570 5.570 18 C -0.106 4.106 19 C -0.121 4.121 20 C -0.124 4.124 21 C -0.207 4.207 22 C 0.041 3.959 23 C -0.069 4.069 24 O -0.561 6.561 25 Si 0.809 3.191 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.106 0.894 29 H 0.417 0.583 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.261 0.739 35 H 0.445 0.555 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.053 0.947 40 H 0.179 0.821 41 H 0.185 0.815 42 H 0.101 0.899 43 H 0.399 0.601 44 H -0.309 1.309 45 H -0.280 1.280 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.089 -6.187 -0.468 6.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.081 5.081 3 C -0.203 4.203 4 C 0.377 3.623 5 O -0.468 6.468 6 N -0.352 5.352 7 C 0.046 3.954 8 H 0.090 0.910 9 C -0.154 4.154 10 C -0.140 4.140 11 C -0.018 4.018 12 H 0.128 0.872 13 C -0.079 4.079 14 N -0.181 5.181 15 N -0.192 5.192 16 C -0.122 4.122 17 N -0.184 5.184 18 C -0.145 4.145 19 C -0.160 4.160 20 C -0.150 4.150 21 C -0.230 4.230 22 C -0.077 4.077 23 C -0.176 4.176 24 O -0.372 6.372 25 Si 0.712 3.288 26 H 0.089 0.911 27 H 0.103 0.897 28 H 0.125 0.875 29 H 0.255 0.745 30 H 0.103 0.897 31 H 0.111 0.889 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.277 0.723 35 H 0.288 0.712 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.072 0.928 40 H 0.197 0.803 41 H 0.202 0.798 42 H 0.119 0.881 43 H 0.251 0.749 44 H -0.237 1.237 45 H -0.207 1.207 Dipole moment (debyes) X Y Z Total from point charges 1.381 -4.868 -0.137 5.062 hybrid contribution -2.798 -1.135 0.565 3.072 sum -1.417 -6.003 0.428 6.183 Atomic orbital electron populations 1.22428 0.76192 1.05485 1.03742 1.43911 1.07145 1.04804 1.52216 1.20302 0.91607 0.87397 1.20970 1.17184 0.85337 0.84273 0.75481 1.90747 1.17824 1.85311 1.52954 1.45573 1.11801 1.05128 1.72667 1.21032 0.97838 0.79228 0.97289 0.91039 1.21746 0.97054 0.93021 1.03554 1.21476 1.01828 0.95815 0.94918 1.19826 0.99376 0.82394 1.00185 0.87200 1.25201 0.83507 0.98908 1.00290 1.74187 1.27223 0.95191 1.21535 1.74194 1.03713 1.22625 1.18711 1.27290 0.99791 0.83672 1.01451 1.44102 1.14643 1.08571 1.51086 1.21518 0.96733 0.94007 1.02260 1.21808 1.01628 0.95084 0.97491 1.21729 0.94377 0.95649 1.03243 1.20970 0.95016 0.95791 1.11218 1.20581 0.91324 0.87603 1.08179 1.24913 0.93371 0.96170 1.03158 1.86441 1.34995 1.36008 1.79773 0.93435 0.83880 0.73332 0.78115 0.91060 0.89691 0.87548 0.74478 0.89720 0.88927 0.91279 0.90727 0.72333 0.71200 0.90894 0.90902 0.90072 0.92777 0.80336 0.79757 0.88113 0.74851 1.23652 1.20695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.40 10.33 127.77 1.32 1.72 16 2 N -0.41 -2.74 3.16 -519.69 -1.64 -4.38 16 3 C -0.09 -0.46 6.89 40.35 0.28 -0.19 16 4 C 0.59 3.39 7.73 86.45 0.67 4.06 16 5 O -0.59 -7.40 14.18 -4.32 -0.06 -7.47 16 6 N -0.70 1.59 5.05 -446.49 -2.25 -0.66 16 7 C 0.15 -0.52 2.41 44.99 0.11 -0.42 16 8 H 0.07 0.04 7.67 -2.39 -0.02 0.03 16 9 C -0.12 0.89 5.39 30.60 0.16 1.05 16 10 C -0.10 0.56 5.19 30.60 0.16 0.72 16 11 C 0.00 -0.01 2.66 -11.54 -0.03 -0.04 16 12 H 0.11 -0.36 8.14 -2.39 -0.02 -0.38 16 13 C 0.19 0.38 6.99 137.98 0.96 1.35 16 14 N -0.34 -3.75 12.21 -50.16 -0.61 -4.37 16 15 N -0.35 -3.75 12.21 -59.99 -0.73 -4.49 16 16 C 0.17 -0.03 13.19 180.11 2.38 2.35 16 17 N -0.57 1.92 5.96 -189.87 -1.13 0.79 16 18 C -0.11 0.56 4.97 30.58 0.15 0.71 16 19 C -0.12 0.41 5.49 30.58 0.17 0.58 16 20 C -0.12 0.11 10.35 22.57 0.23 0.34 16 21 C -0.21 0.27 9.37 22.01 0.21 0.47 16 22 C 0.04 0.11 6.17 41.35 0.26 0.36 16 23 C -0.07 0.16 2.98 71.24 0.21 0.37 16 24 O -0.56 0.31 9.80 -148.98 -1.46 -1.15 16 25 Si 0.81 -3.69 31.11 68.60 2.13 -1.55 16 26 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 27 H 0.08 0.84 5.91 -2.39 -0.01 0.83 16 28 H 0.11 0.56 5.47 -2.39 -0.01 0.54 16 29 H 0.42 -3.36 7.56 -92.71 -0.70 -4.06 16 30 H 0.08 -0.68 8.14 -2.39 -0.02 -0.70 16 31 H 0.09 -0.93 8.14 -2.39 -0.02 -0.95 16 32 H 0.07 -0.39 8.14 -2.39 -0.02 -0.41 16 33 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 34 H 0.26 -2.61 8.06 -2.91 -0.02 -2.63 16 35 H 0.44 -4.66 8.28 -92.70 -0.77 -5.42 16 36 H 0.07 -0.50 7.52 -2.39 -0.02 -0.52 16 37 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 38 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 39 H 0.05 0.10 8.06 -2.39 -0.02 0.08 16 40 H 0.18 -1.51 7.49 -2.91 -0.02 -1.53 16 41 H 0.19 -1.60 6.86 -2.91 -0.02 -1.62 16 42 H 0.10 -0.63 7.96 -2.38 -0.02 -0.65 16 43 H 0.40 -3.53 8.74 -74.06 -0.65 -4.18 16 44 H -0.31 -1.51 7.11 99.48 0.71 -0.80 16 45 H -0.28 0.33 7.11 99.48 0.71 1.03 16 Total: 0.00 -32.36 362.72 0.45 -31.92 By element: Atomic # 1 Polarization: -21.04 SS G_CDS: -1.02 Total: -22.07 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: 7.23 Total: 13.43 kcal Atomic # 7 Polarization: -6.74 SS G_CDS: -6.37 Total: -13.11 kcal Atomic # 8 Polarization: -7.09 SS G_CDS: -1.52 Total: -8.61 kcal Atomic # 14 Polarization: -3.69 SS G_CDS: 2.13 Total: -1.55 kcal Total: -32.36 0.45 -31.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16624780_10803936.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.087 kcal (2) G-P(sol) polarization free energy of solvation -32.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds