Wall clock time and date at job start Sun Mar 7 2021 05:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86296 * 109.47141 * 2 1 4 4 C 1.50709 * 109.46750 * 240.00195 * 2 1 3 5 5 C 1.36447 * 120.29026 * 239.99829 * 4 2 1 6 6 C 1.40093 * 119.25198 * 179.74892 * 5 4 2 7 7 C 1.40852 * 132.86674 * 180.25311 * 6 5 4 8 8 C 1.46563 * 126.58203 * 359.96757 * 7 6 5 9 9 O 1.21723 * 120.00060 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00369 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00096 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.47385 * 324.99518 * 11 10 8 13 13 C 1.52996 * 109.47141 * 85.00113 * 11 10 8 14 14 C 1.53003 * 109.47178 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47215 * 299.99970 * 14 13 11 16 16 H 1.09000 * 109.46533 * 299.99934 * 15 14 13 17 17 C 1.50696 * 109.47312 * 179.97438 * 15 14 13 18 18 N 1.30517 * 126.34635 * 145.02242 * 17 15 14 19 19 N 1.28596 * 109.67565 * 179.97438 * 18 17 15 20 20 C 1.30528 * 109.67169 * 0.02562 * 19 18 17 21 21 N 1.35494 * 126.34479 * 324.70821 * 17 15 14 22 22 C 1.52999 * 109.46973 * 59.99564 * 15 14 13 23 23 C 1.52999 * 109.46814 * 204.99981 * 11 10 8 24 24 C 1.40560 * 106.84022 * 180.02562 * 7 6 5 25 25 N 1.30739 * 108.74445 * 0.02562 * 24 7 6 26 26 N 1.36579 * 120.23015 * 0.25716 * 6 5 4 27 27 C 1.36243 * 120.07969 * 359.97438 * 26 6 5 28 28 C 1.35184 * 120.70506 * 359.97438 * 27 26 6 29 29 H 0.96700 * 113.99859 * 300.00226 * 1 2 3 30 30 H 1.08995 * 109.47160 * 120.00123 * 2 1 3 31 31 H 1.48504 * 110.00030 * 300.00147 * 3 2 1 32 32 H 1.48493 * 110.00386 * 61.32041 * 3 2 1 33 33 H 1.08002 * 120.37857 * 0.03132 * 5 4 2 34 34 H 0.97005 * 119.99502 * 0.02562 * 10 8 7 35 35 H 1.09004 * 109.46859 * 299.99412 * 13 11 10 36 36 H 1.08994 * 109.47764 * 59.99780 * 13 11 10 37 37 H 1.08995 * 109.47404 * 179.97438 * 14 13 11 38 38 H 1.09006 * 109.47008 * 59.99728 * 14 13 11 39 39 H 1.07997 * 126.34598 * 180.02562 * 20 19 18 40 40 H 0.96998 * 126.98087 * 0.04300 * 21 17 15 41 41 H 1.09008 * 109.47261 * 180.02562 * 22 15 14 42 42 H 1.09000 * 109.47189 * 60.00772 * 22 15 14 43 43 H 1.09000 * 109.47285 * 299.99350 * 23 11 10 44 44 H 1.09004 * 109.47490 * 59.99873 * 23 11 10 45 45 H 1.08004 * 125.62931 * 179.97438 * 24 7 6 46 46 H 1.07995 * 119.64905 * 179.97438 * 27 26 6 47 47 H 1.08007 * 119.84081 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2306 5 6 2.7161 -1.8203 -1.1124 6 6 3.1666 -2.4668 -2.2707 7 6 3.9657 -3.6072 -2.4824 8 6 4.5651 -4.4576 -1.4501 9 8 4.3897 -4.2015 -0.2731 10 7 5.3114 -5.5226 -1.8040 11 6 5.9101 -6.3729 -0.7721 12 1 6.2015 -5.7593 0.0803 13 6 4.8914 -7.4216 -0.3212 14 6 5.5168 -8.3101 0.7560 15 6 6.7516 -9.0108 0.1856 16 1 6.4598 -9.6241 -0.6669 17 6 7.3680 -9.8854 1.2467 18 7 7.9527 -11.0367 1.0567 19 7 8.3629 -11.5049 2.1819 20 6 8.0580 -10.6738 3.1411 21 7 7.4231 -9.6195 2.5742 22 6 7.7702 -7.9621 -0.2654 23 6 7.1450 -7.0736 -1.3421 24 6 4.0790 -3.7725 -3.8736 25 7 3.4097 -2.8183 -4.4660 26 7 2.8266 -1.9858 -3.5030 27 6 2.0465 -0.8741 -3.6107 28 6 1.5996 -0.2348 -2.5065 29 1 -0.3933 0.4417 0.7650 30 1 1.7924 -0.5138 0.8899 31 1 1.5615 2.4679 -1.2085 32 1 1.5880 2.4585 1.2242 33 1 2.9833 -2.1990 -0.1368 34 1 5.4521 -5.7261 -2.7420 35 1 4.0116 -6.9224 0.0849 36 1 4.5999 -8.0352 -1.1736 37 1 4.7910 -9.0569 1.0776 38 1 5.8086 -7.6967 1.6086 39 1 8.2762 -10.8004 4.1912 40 1 7.0761 -8.8350 3.0271 41 1 8.6498 -8.4612 -0.6723 42 1 8.0620 -7.3488 0.5871 43 1 6.8537 -7.6873 -2.1945 44 1 7.8708 -6.3265 -1.6634 45 1 4.6289 -4.5577 -4.3712 46 1 1.7822 -0.4995 -4.5885 47 1 0.9815 0.6451 -2.6081 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16624780_11618758.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:32:25 Heat of formation + Delta-G solvation = 108.057964 kcal Electronic energy + Delta-G solvation = -32337.852073 eV Core-core repulsion = 27911.009892 eV Total energy + Delta-G solvation = -4426.842181 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 369.159 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -44.12437 -43.29672 -40.83623 -39.34028 -38.95698 -37.37775 -35.61591 -34.54835 -34.26311 -32.44238 -32.16452 -31.82395 -30.53966 -29.25877 -27.26137 -25.26984 -24.54959 -24.08261 -23.50914 -23.20261 -22.80594 -21.99648 -21.27013 -20.74611 -19.28575 -19.15277 -18.51043 -18.01773 -17.60864 -17.03593 -16.93326 -16.83175 -16.73154 -16.33813 -16.06538 -15.84165 -15.62303 -15.55652 -15.09586 -15.03583 -14.70277 -14.43524 -14.13977 -14.02938 -13.98072 -13.62458 -13.28428 -13.23218 -13.03215 -12.80245 -12.67905 -12.36126 -12.24542 -12.14453 -12.10633 -11.94335 -11.81366 -11.63882 -11.57052 -11.46710 -11.24804 -10.87346 -10.83476 -10.24890 -10.22685 -10.00413 -8.78045 -4.90730 -0.57322 -0.11895 0.88144 1.02605 1.06253 1.21568 1.60430 1.86942 1.87187 1.91854 2.06594 2.26768 2.52639 3.02045 3.16295 3.23252 3.50892 3.59283 3.64206 3.71842 3.72272 3.87948 3.91895 3.98991 4.02985 4.17394 4.21971 4.26086 4.34868 4.36031 4.39576 4.42989 4.44261 4.48038 4.55170 4.58685 4.71809 4.78267 4.85618 5.05298 5.07192 5.08235 5.11660 5.14084 5.17319 5.20813 5.28647 5.33517 5.38592 5.62219 5.65919 6.25994 6.30726 6.52724 6.67716 7.36493 7.72714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.552 6.552 2 C -0.085 4.085 3 Si 0.763 3.237 4 C -0.021 4.021 5 C -0.110 4.110 6 C 0.150 3.850 7 C -0.336 4.336 8 C 0.602 3.398 9 O -0.586 6.586 10 N -0.712 5.712 11 C 0.151 3.849 12 H 0.075 0.925 13 C -0.122 4.122 14 C -0.106 4.106 15 C 0.003 3.997 16 H 0.107 0.893 17 C 0.192 3.808 18 N -0.343 5.343 19 N -0.355 5.355 20 C 0.168 3.832 21 N -0.569 5.569 22 C -0.101 4.101 23 C -0.116 4.116 24 C 0.130 3.870 25 N -0.342 5.342 26 N -0.274 5.274 27 C 0.111 3.889 28 C -0.148 4.148 29 H 0.400 0.600 30 H 0.096 0.904 31 H -0.276 1.276 32 H -0.275 1.275 33 H 0.159 0.841 34 H 0.413 0.587 35 H 0.055 0.945 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.261 0.739 40 H 0.445 0.555 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.236 0.764 46 H 0.201 0.799 47 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.296 6.609 1.567 6.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.362 6.362 2 C -0.193 4.193 3 Si 0.664 3.336 4 C -0.027 4.027 5 C -0.129 4.129 6 C 0.029 3.971 7 C -0.351 4.351 8 C 0.391 3.609 9 O -0.468 6.468 10 N -0.363 5.363 11 C 0.046 3.954 12 H 0.093 0.907 13 C -0.161 4.161 14 C -0.145 4.145 15 C -0.018 4.018 16 H 0.125 0.875 17 C -0.078 4.078 18 N -0.183 5.183 19 N -0.193 5.193 20 C -0.122 4.122 21 N -0.183 5.183 22 C -0.140 4.140 23 C -0.154 4.154 24 C -0.051 4.051 25 N -0.162 5.162 26 N -0.038 5.038 27 C -0.014 4.014 28 C -0.169 4.169 29 H 0.252 0.748 30 H 0.114 0.886 31 H -0.202 1.202 32 H -0.201 1.201 33 H 0.176 0.824 34 H 0.249 0.751 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.277 0.723 40 H 0.289 0.711 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.107 0.893 44 H 0.102 0.898 45 H 0.252 0.748 46 H 0.218 0.782 47 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -0.196 6.321 -0.169 6.327 hybrid contribution -1.560 0.647 1.873 2.521 sum -1.755 6.968 1.704 7.385 Atomic orbital electron populations 1.86529 1.17389 1.80917 1.51380 1.24931 0.84851 1.12230 0.97281 0.93541 0.90706 0.71052 0.78308 1.19592 0.94404 0.93562 0.95130 1.20645 0.99750 0.94704 0.97817 1.19560 0.96133 0.94766 0.86630 1.19734 1.17129 1.03941 0.94289 1.16918 0.77384 0.79796 0.86762 1.90744 1.62836 1.73363 1.19868 1.45636 1.52074 1.27584 1.10990 1.20960 0.92669 0.90717 0.91035 0.90686 1.21826 0.98193 0.96907 0.99152 1.21526 0.95736 0.98546 0.98702 1.19828 0.94736 0.93903 0.93347 0.87451 1.25214 1.01315 0.95807 0.85512 1.74184 1.15483 1.09142 1.19494 1.74191 1.22107 1.27026 0.96015 1.27289 0.96994 0.84983 1.02940 1.44093 1.45349 1.21109 1.07783 1.21465 0.97373 0.95833 0.99356 1.21732 0.95882 0.99077 0.98733 1.24648 0.93353 0.95706 0.91360 1.77580 1.19813 1.07187 1.11615 1.46288 1.32553 1.19338 1.05621 1.22085 0.91596 0.84552 1.03177 1.21028 1.02796 1.02936 0.90100 0.74834 0.88608 1.20189 1.20111 0.82362 0.75060 0.92666 0.90378 0.91096 0.90702 0.72325 0.71137 0.90989 0.91114 0.89273 0.89780 0.74808 0.78194 0.80791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.82 12.76 -148.98 -1.90 -1.08 16 2 C -0.09 0.28 2.81 71.24 0.20 0.48 16 3 Si 0.76 -4.07 31.96 68.60 2.19 -1.88 16 4 C -0.02 -0.01 4.53 -19.81 -0.09 -0.10 16 5 C -0.11 -0.41 9.35 22.30 0.21 -0.20 16 6 C 0.15 0.89 6.76 39.49 0.27 1.16 16 7 C -0.34 -1.39 6.17 -19.90 -0.12 -1.51 16 8 C 0.60 2.56 7.75 86.41 0.67 3.23 16 9 O -0.59 -6.31 15.37 -4.42 -0.07 -6.37 16 10 N -0.71 2.38 5.07 -446.60 -2.26 0.11 16 11 C 0.15 -0.64 2.46 44.99 0.11 -0.53 16 12 H 0.07 -0.04 7.57 -2.39 -0.02 -0.05 16 13 C -0.12 0.47 5.49 30.59 0.17 0.64 16 14 C -0.11 0.60 4.98 30.59 0.15 0.75 16 15 C 0.00 -0.01 2.66 -11.54 -0.03 -0.04 16 16 H 0.11 -0.33 8.14 -2.39 -0.02 -0.35 16 17 C 0.19 0.35 6.98 137.98 0.96 1.32 16 18 N -0.34 -3.77 12.21 -50.16 -0.61 -4.38 16 19 N -0.35 -3.73 12.21 -59.98 -0.73 -4.47 16 20 C 0.17 -0.07 13.19 180.11 2.38 2.31 16 21 N -0.57 2.11 5.96 -189.86 -1.13 0.98 16 22 C -0.10 0.58 5.18 30.58 0.16 0.74 16 23 C -0.12 0.93 5.39 30.58 0.16 1.09 16 24 C 0.13 0.01 11.44 85.42 0.98 0.99 16 25 N -0.34 -1.68 12.57 -56.61 -0.71 -2.39 16 26 N -0.27 -1.28 3.86 -187.28 -0.72 -2.00 16 27 C 0.11 -0.06 11.17 83.30 0.93 0.87 16 28 C -0.15 0.21 8.67 22.03 0.19 0.40 16 29 H 0.40 -3.75 8.74 -74.06 -0.65 -4.40 16 30 H 0.10 -0.56 7.71 -2.39 -0.02 -0.58 16 31 H -0.28 0.15 7.06 99.48 0.70 0.86 16 32 H -0.28 0.37 7.11 99.48 0.71 1.08 16 33 H 0.16 0.66 7.01 -2.91 -0.02 0.64 16 34 H 0.41 -3.83 7.52 -92.70 -0.70 -4.53 16 35 H 0.05 0.06 8.14 -2.38 -0.02 0.04 16 36 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 37 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 38 H 0.07 -0.56 7.52 -2.38 -0.02 -0.58 16 39 H 0.26 -2.69 8.06 -2.91 -0.02 -2.71 16 40 H 0.45 -4.90 8.29 -92.71 -0.77 -5.67 16 41 H 0.07 -0.25 8.14 -2.38 -0.02 -0.27 16 42 H 0.07 -0.44 8.14 -2.39 -0.02 -0.46 16 43 H 0.09 -0.90 8.14 -2.39 -0.02 -0.92 16 44 H 0.08 -0.71 8.14 -2.38 -0.02 -0.73 16 45 H 0.24 -2.30 7.46 -2.91 -0.02 -2.33 16 46 H 0.20 -1.30 8.06 -2.91 -0.02 -1.33 16 47 H 0.17 -0.86 7.51 -2.91 -0.02 -0.88 16 Total: 0.00 -34.11 391.70 0.32 -33.79 By element: Atomic # 1 Polarization: -22.91 SS G_CDS: -1.02 Total: -23.93 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: 7.29 Total: 11.62 kcal Atomic # 7 Polarization: -5.97 SS G_CDS: -6.17 Total: -12.15 kcal Atomic # 8 Polarization: -5.49 SS G_CDS: -1.97 Total: -7.46 kcal Atomic # 14 Polarization: -4.07 SS G_CDS: 2.19 Total: -1.88 kcal Total: -34.11 0.32 -33.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16624780_11618758.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.851 kcal (2) G-P(sol) polarization free energy of solvation -34.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds