Wall clock time and date at job start Sun Mar 7 2021 05:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35663 * 117.00242 * 2 1 4 4 C 1.38397 * 120.11576 * 0.02562 * 3 2 1 5 5 C 1.38731 * 120.03067 * 179.97438 * 4 3 2 6 6 O 1.35718 * 119.86269 * 179.97438 * 5 4 3 7 7 C 1.42901 * 116.99867 * 0.02562 * 6 5 4 8 8 C 1.39143 * 120.27410 * 0.02562 * 5 4 3 9 9 C 1.50689 * 119.88123 * 179.97438 * 8 5 4 10 10 O 1.42902 * 109.47137 * 284.99898 * 9 8 5 11 11 Si 1.86303 * 109.47498 * 164.99950 * 9 8 5 12 12 C 1.37588 * 120.23613 * 359.67040 * 8 5 4 13 13 C 1.39820 * 119.96551 * 0.62896 * 12 8 5 14 14 C 1.47293 * 120.13487 * 179.67328 * 13 12 8 15 15 O 1.21622 * 119.99912 * 179.72581 * 14 13 12 16 16 N 1.34777 * 120.00207 * 359.72446 * 14 13 12 17 17 C 1.46500 * 120.00270 * 180.02562 * 16 14 13 18 18 H 1.09002 * 109.47129 * 34.99540 * 17 16 14 19 19 C 1.52997 * 109.47473 * 154.99797 * 17 16 14 20 20 C 1.53000 * 109.47060 * 180.02562 * 19 17 16 21 21 C 1.53002 * 109.47233 * 299.99657 * 20 19 17 22 22 H 1.09002 * 109.47075 * 300.00932 * 21 20 19 23 23 C 1.50693 * 109.47531 * 180.02562 * 21 20 19 24 24 N 1.30523 * 126.34378 * 95.02303 * 23 21 20 25 25 N 1.28601 * 109.67221 * 179.97438 * 24 23 21 26 26 C 1.30522 * 109.67075 * 359.97438 * 25 24 23 27 27 N 1.35490 * 126.34777 * 274.72068 * 23 21 20 28 28 C 1.52997 * 109.46817 * 60.00194 * 21 20 19 29 29 C 1.52999 * 109.46944 * 275.00142 * 17 16 14 30 30 H 1.09000 * 109.47372 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47167 * 299.99961 * 1 2 3 32 32 H 1.09000 * 109.47081 * 60.00300 * 1 2 3 33 33 H 1.08002 * 119.98921 * 359.97438 * 4 3 2 34 34 H 1.08994 * 109.46893 * 299.99612 * 7 6 5 35 35 H 1.08998 * 109.47144 * 60.00094 * 7 6 5 36 36 H 1.09006 * 109.47071 * 179.97438 * 7 6 5 37 37 H 1.09008 * 109.47498 * 44.99736 * 9 8 5 38 38 H 0.96696 * 113.99699 * 299.99586 * 10 9 8 39 39 H 1.48489 * 110.00330 * 180.02562 * 11 9 8 40 40 H 1.48506 * 109.99461 * 301.31889 * 11 9 8 41 41 H 1.07998 * 120.01346 * 180.29981 * 12 8 5 42 42 H 0.97000 * 120.00239 * 0.02562 * 16 14 13 43 43 H 1.09002 * 109.47153 * 59.99757 * 19 17 16 44 44 H 1.09001 * 109.46832 * 299.99948 * 19 17 16 45 45 H 1.08992 * 109.47399 * 59.99823 * 20 19 17 46 46 H 1.09004 * 109.46724 * 180.02562 * 20 19 17 47 47 H 1.07994 * 126.34270 * 180.02562 * 26 25 24 48 48 H 0.96995 * 126.98245 * 0.02967 * 27 23 21 49 49 H 1.09002 * 109.47153 * 60.00231 * 28 21 20 50 50 H 1.09001 * 109.47289 * 180.02562 * 28 21 20 51 51 H 1.09000 * 109.47486 * 59.99569 * 29 17 16 52 52 H 1.09002 * 109.46716 * 299.99651 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2935 2.3710 0.0005 5 6 1.9253 3.6061 0.0011 6 8 1.1851 4.7437 0.0011 7 6 -0.2360 4.5931 0.0011 8 6 3.3145 3.6835 0.0005 9 6 3.9915 5.0298 0.0005 10 8 3.8934 5.6122 -1.3007 11 14 5.7865 4.8224 0.4544 12 6 4.0724 2.5351 0.0063 13 6 3.4461 1.2851 -0.0006 14 6 4.2539 0.0533 -0.0017 15 8 3.7065 -1.0328 -0.0026 16 7 5.5995 0.1298 -0.0017 17 6 6.4028 -1.0952 -0.0034 18 1 5.8980 -1.8600 -0.5937 19 6 7.7757 -0.8041 -0.6127 20 6 8.6144 -2.0837 -0.6150 21 6 8.7892 -2.5816 0.8211 22 1 9.2941 -1.8171 1.4118 23 6 9.6158 -3.8416 0.8190 24 7 10.9057 -3.9207 1.0018 25 7 11.2776 -5.1500 0.9360 26 6 10.2417 -5.9109 0.7089 27 7 9.1569 -5.1027 0.6327 28 6 7.4163 -2.8727 1.4305 29 6 6.5774 -1.5925 1.4330 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 0.2149 2.3165 0.0005 34 1 -0.5430 4.0439 -0.8889 35 1 -0.5431 4.0438 0.8910 36 1 -0.7056 5.5768 0.0015 37 1 3.5058 5.6808 0.7275 38 1 4.3055 5.0857 -1.9993 39 1 6.4652 6.1431 0.4586 40 1 5.9020 4.1883 1.7923 41 1 5.1505 2.5994 0.0108 42 1 6.0360 0.9960 -0.0006 43 1 8.2805 -0.0394 -0.0224 44 1 7.6512 -0.4498 -1.6360 45 1 8.1095 -2.8481 -1.2056 46 1 9.5926 -1.8761 -1.0488 47 1 10.2477 -6.9858 0.6048 48 1 8.2386 -5.3721 0.4750 49 1 6.9114 -3.6371 0.8399 50 1 7.5407 -3.2270 2.4538 51 1 5.5994 -1.8000 1.8671 52 1 7.0822 -0.8278 2.0233 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16624780_12297780.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:32:33 Heat of formation + Delta-G solvation = -38.968052 kcal Electronic energy + Delta-G solvation = -36807.496956 eV Core-core repulsion = 31968.681348 eV Total energy + Delta-G solvation = -4838.815608 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 389.183 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -44.11348 -42.09554 -40.83829 -40.03568 -39.08853 -38.41301 -36.95872 -35.63340 -34.53753 -32.70878 -32.21599 -31.79450 -31.50507 -29.47201 -28.98431 -28.08599 -26.11764 -25.15912 -24.29681 -23.82627 -23.29312 -22.66373 -22.00759 -21.41459 -20.86106 -20.00945 -19.26672 -18.76853 -18.20813 -17.93350 -17.23896 -17.15284 -16.83203 -16.63261 -16.53620 -16.31090 -16.28149 -16.00929 -15.78430 -15.65873 -15.59833 -15.31210 -15.05071 -14.93582 -14.57550 -14.18932 -14.11317 -13.89774 -13.70185 -13.46397 -13.22451 -13.18796 -12.78553 -12.66968 -12.54913 -12.52267 -12.32855 -12.25900 -12.20304 -12.11993 -11.97184 -11.80435 -11.64618 -11.57592 -11.45320 -11.23349 -10.82182 -10.37027 -10.21444 -10.03592 -9.90042 -9.17613 -5.03804 -0.24076 0.09349 0.89239 1.32256 1.66661 1.79014 1.87939 1.92756 2.02711 2.12225 2.14530 2.19923 2.64350 3.21486 3.46239 3.53261 3.58921 3.68811 3.74384 3.75213 3.86644 3.93656 4.01787 4.12548 4.17294 4.20695 4.24721 4.25542 4.26894 4.28134 4.29077 4.39389 4.41678 4.45323 4.50362 4.50518 4.56760 4.62962 4.65539 4.73603 4.76842 4.86516 4.92659 5.02990 5.06496 5.10012 5.11116 5.16528 5.23646 5.31289 5.35771 5.39721 5.60381 6.03341 6.26382 6.29321 6.62700 6.86269 7.32990 7.73644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.302 6.302 3 C 0.216 3.784 4 C -0.313 4.313 5 C 0.210 3.790 6 O -0.315 6.315 7 C 0.013 3.987 8 C -0.204 4.204 9 C -0.062 4.062 10 O -0.554 6.554 11 Si 0.776 3.224 12 C 0.010 3.990 13 C -0.225 4.225 14 C 0.566 3.434 15 O -0.562 6.562 16 N -0.714 5.714 17 C 0.148 3.852 18 H 0.073 0.927 19 C -0.118 4.118 20 C -0.101 4.101 21 C 0.002 3.998 22 H 0.110 0.890 23 C 0.193 3.807 24 N -0.343 5.343 25 N -0.354 5.354 26 C 0.167 3.833 27 N -0.570 5.570 28 C -0.107 4.107 29 C -0.124 4.124 30 H 0.113 0.887 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.160 0.840 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.118 0.882 37 H 0.096 0.904 38 H 0.393 0.607 39 H -0.298 1.298 40 H -0.273 1.273 41 H 0.170 0.830 42 H 0.412 0.588 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.068 0.932 46 H 0.074 0.926 47 H 0.260 0.740 48 H 0.445 0.555 49 H 0.072 0.928 50 H 0.070 0.930 51 H 0.053 0.947 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.476 0.212 -2.658 6.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.213 6.213 3 C 0.167 3.833 4 C -0.332 4.332 5 C 0.162 3.838 6 O -0.227 6.227 7 C -0.081 4.081 8 C -0.206 4.206 9 C -0.171 4.171 10 O -0.362 6.362 11 Si 0.680 3.320 12 C -0.008 4.008 13 C -0.229 4.229 14 C 0.354 3.646 15 O -0.442 6.442 16 N -0.367 5.367 17 C 0.044 3.956 18 H 0.092 0.908 19 C -0.156 4.156 20 C -0.141 4.141 21 C -0.019 4.019 22 H 0.128 0.872 23 C -0.078 4.078 24 N -0.182 5.182 25 N -0.193 5.193 26 C -0.123 4.123 27 N -0.184 5.184 28 C -0.145 4.145 29 C -0.162 4.162 30 H 0.132 0.868 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.178 0.822 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.136 0.864 37 H 0.114 0.886 38 H 0.243 0.757 39 H -0.226 1.226 40 H -0.199 1.199 41 H 0.187 0.813 42 H 0.250 0.750 43 H 0.113 0.887 44 H 0.108 0.892 45 H 0.087 0.913 46 H 0.092 0.908 47 H 0.276 0.724 48 H 0.288 0.712 49 H 0.091 0.909 50 H 0.088 0.912 51 H 0.071 0.929 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.826 0.533 -1.490 4.140 hybrid contribution -2.895 -0.210 0.097 2.904 sum -6.721 0.322 -1.393 6.871 Atomic orbital electron populations 1.23451 0.76687 1.05717 1.02503 1.86359 1.23019 1.25830 1.86063 1.18994 0.91261 0.84577 0.88476 1.21411 1.01953 0.90876 1.18960 1.18978 0.91071 0.84869 0.88857 1.86143 1.21045 1.28908 1.86586 1.23448 0.76350 1.05770 1.02570 1.19619 0.90841 0.96850 1.13264 1.25081 1.11441 0.91638 0.88966 1.86510 1.82677 1.50228 1.16788 0.94323 0.73331 0.81504 0.82821 1.20877 0.99781 0.88644 0.91484 1.19195 0.90698 0.94091 1.18955 1.17953 0.82662 0.88128 0.75820 1.90816 1.72382 1.30117 1.50837 1.45831 1.04895 1.10648 1.75351 1.21003 0.91661 0.86629 0.96353 0.90841 1.21781 0.92658 0.98137 1.03028 1.21477 1.00952 0.97812 0.93811 1.19849 0.93295 0.89254 0.99480 0.87238 1.25242 0.92269 0.88658 1.01648 1.74187 1.10224 1.12902 1.20914 1.74191 1.27374 0.97575 1.20158 1.27274 0.81959 1.01418 1.01645 1.44101 1.13090 1.06672 1.54537 1.21532 0.93160 0.98398 1.01455 1.21852 0.99738 0.97584 0.97073 0.86839 0.91292 0.91131 0.82230 0.91232 0.91318 0.86412 0.88623 0.75739 1.22551 1.19869 0.81315 0.74981 0.88748 0.89199 0.91306 0.90751 0.72407 0.71197 0.90898 0.91166 0.92862 0.90062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.03 9.81 113.37 1.11 1.09 16 2 O -0.30 -1.98 8.56 -68.83 -0.59 -2.56 16 3 C 0.22 0.96 6.70 22.82 0.15 1.11 16 4 C -0.31 -0.29 8.01 22.43 0.18 -0.11 16 5 C 0.21 0.43 6.67 22.61 0.15 0.58 16 6 O -0.32 -0.78 9.80 -90.40 -0.89 -1.67 16 7 C 0.01 -0.06 9.80 113.37 1.11 1.05 16 8 C -0.20 0.06 5.27 -19.80 -0.10 -0.05 16 9 C -0.06 0.04 2.37 71.23 0.17 0.21 16 10 O -0.55 -0.16 12.88 -148.98 -1.92 -2.08 16 11 Si 0.78 -3.88 29.90 68.60 2.05 -1.83 16 12 C 0.01 -0.03 8.14 22.50 0.18 0.15 16 13 C -0.23 -0.55 5.89 -20.00 -0.12 -0.67 16 14 C 0.57 2.33 7.72 86.62 0.67 3.00 16 15 O -0.56 -7.01 14.81 16.86 0.25 -6.76 16 16 N -0.71 2.88 5.03 -445.93 -2.24 0.64 16 17 C 0.15 -0.70 2.45 44.99 0.11 -0.59 16 18 H 0.07 -0.03 7.58 -2.39 -0.02 -0.05 16 19 C -0.12 1.10 5.39 30.59 0.16 1.27 16 20 C -0.10 0.67 5.19 30.60 0.16 0.83 16 21 C 0.00 -0.01 2.66 -11.54 -0.03 -0.04 16 22 H 0.11 -0.43 8.14 -2.39 -0.02 -0.45 16 23 C 0.19 0.30 6.99 137.98 0.96 1.26 16 24 N -0.34 -3.64 12.21 -50.16 -0.61 -4.25 16 25 N -0.35 -3.67 12.21 -59.99 -0.73 -4.40 16 26 C 0.17 -0.07 13.19 180.11 2.37 2.31 16 27 N -0.57 2.10 5.96 -189.87 -1.13 0.97 16 28 C -0.11 0.61 4.97 30.61 0.15 0.77 16 29 C -0.12 0.51 5.50 30.61 0.17 0.68 16 30 H 0.11 -0.49 8.14 -2.39 -0.02 -0.51 16 31 H 0.07 -0.35 7.66 -2.39 -0.02 -0.37 16 32 H 0.07 -0.38 7.66 -2.39 -0.02 -0.39 16 33 H 0.16 -0.58 4.50 -2.91 -0.01 -0.59 16 34 H 0.07 -0.48 7.65 -2.39 -0.02 -0.49 16 35 H 0.07 -0.48 7.65 -2.39 -0.02 -0.50 16 36 H 0.12 -0.88 8.14 -2.38 -0.02 -0.90 16 37 H 0.10 0.25 7.82 -2.38 -0.02 0.23 16 38 H 0.39 -3.40 8.70 -74.06 -0.64 -4.05 16 39 H -0.30 -0.94 7.11 99.48 0.71 -0.23 16 40 H -0.27 0.37 7.11 99.48 0.71 1.08 16 41 H 0.17 -1.85 3.42 -2.91 -0.01 -1.86 16 42 H 0.41 -4.43 6.62 -92.71 -0.61 -5.05 16 43 H 0.09 -1.15 8.14 -2.39 -0.02 -1.17 16 44 H 0.09 -0.95 8.14 -2.39 -0.02 -0.97 16 45 H 0.07 -0.46 8.14 -2.39 -0.02 -0.48 16 46 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 47 H 0.26 -2.64 8.06 -2.91 -0.02 -2.67 16 48 H 0.44 -4.79 8.28 -92.71 -0.77 -5.56 16 49 H 0.07 -0.53 7.52 -2.39 -0.02 -0.55 16 50 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 51 H 0.05 0.06 8.14 -2.39 -0.02 0.04 16 52 H 0.08 -0.48 8.14 -2.39 -0.02 -0.50 16 Total: 0.00 -36.55 416.80 0.78 -35.78 By element: Atomic # 1 Polarization: -25.71 SS G_CDS: -0.98 Total: -26.69 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: 7.57 Total: 12.85 kcal Atomic # 7 Polarization: -2.32 SS G_CDS: -4.72 Total: -7.04 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: -3.14 Total: -13.07 kcal Atomic # 14 Polarization: -3.88 SS G_CDS: 2.05 Total: -1.83 kcal Total: -36.55 0.78 -35.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16624780_12297780.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.191 kcal (2) G-P(sol) polarization free energy of solvation -36.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds