Wall clock time and date at job start Sun Mar 7 2021 05:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50707 * 109.46442 * 119.99698 * 2 1 3 5 5 C 1.38236 * 119.99632 * 244.72513 * 4 2 1 6 6 C 1.38228 * 119.99652 * 179.81378 * 5 4 2 7 7 C 1.38234 * 120.00331 * 0.41994 * 6 5 4 8 8 C 1.50694 * 120.00641 * 179.79047 * 7 6 5 9 9 C 1.50700 * 109.47373 * 270.02448 * 8 7 6 10 10 O 1.21279 * 119.99936 * 359.97438 * 9 8 7 11 11 N 1.34782 * 120.00379 * 179.97438 * 9 8 7 12 12 C 1.46495 * 120.00198 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.46986 * 34.99594 * 12 11 9 14 14 C 1.52995 * 109.47095 * 154.99781 * 12 11 9 15 15 C 1.53008 * 109.46896 * 180.02562 * 14 12 11 16 16 C 1.53001 * 109.46778 * 299.99824 * 15 14 12 17 17 H 1.08997 * 109.47805 * 299.99813 * 16 15 14 18 18 C 1.50707 * 109.46795 * 180.02562 * 16 15 14 19 19 N 1.30515 * 126.34483 * 94.69140 * 18 16 15 20 20 N 1.28604 * 109.66949 * 179.82489 * 19 18 16 21 21 C 1.30516 * 109.67315 * 0.44855 * 20 19 18 22 22 N 1.35490 * 126.34623 * 275.00386 * 18 16 15 23 23 C 1.53000 * 109.46978 * 60.00550 * 16 15 14 24 24 C 1.53001 * 109.47177 * 299.99282 * 23 16 15 25 25 C 1.38235 * 119.99642 * 359.81145 * 7 6 5 26 26 C 1.38234 * 120.00421 * 359.97438 * 25 7 6 27 27 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 28 28 H 1.08999 * 109.47293 * 239.99660 * 2 1 3 29 29 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 30 30 H 1.48493 * 110.00375 * 61.31384 * 3 2 1 31 31 H 1.08000 * 120.00191 * 0.02562 * 5 4 2 32 32 H 1.07999 * 120.00169 * 180.20849 * 6 5 4 33 33 H 1.09005 * 109.47122 * 30.02266 * 8 7 6 34 34 H 1.09000 * 109.48012 * 150.01864 * 8 7 6 35 35 H 0.97001 * 119.99471 * 0.02562 * 11 9 8 36 36 H 1.08998 * 109.47090 * 300.00061 * 14 12 11 37 37 H 1.08997 * 109.47190 * 60.00522 * 14 12 11 38 38 H 1.08989 * 109.47083 * 60.00248 * 15 14 12 39 39 H 1.08994 * 109.46773 * 180.02562 * 15 14 12 40 40 H 1.07996 * 126.34935 * 179.73160 * 21 20 19 41 41 H 0.97005 * 126.98062 * 359.97438 * 22 18 16 42 42 H 1.08997 * 109.47005 * 59.99886 * 23 16 15 43 43 H 1.08998 * 109.46805 * 179.97438 * 23 16 15 44 44 H 1.09001 * 109.47047 * 300.00600 * 24 23 16 45 45 H 1.08994 * 109.47034 * 180.02562 * 24 23 16 46 46 H 1.08003 * 120.00277 * 179.97438 * 25 7 6 47 47 H 1.07999 * 120.00412 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 1.2306 5 6 2.6435 -0.0134 2.1887 6 6 3.1007 -0.6642 3.3192 7 6 2.8534 -2.0137 3.4877 8 6 3.3559 -2.7242 4.7179 9 6 4.7371 -3.2670 4.4556 10 8 5.2615 -3.0942 3.3758 11 7 5.3897 -3.9443 5.4210 12 6 6.7321 -4.4724 5.1658 13 1 7.2751 -3.7859 4.5162 14 6 7.4820 -4.6213 6.4910 15 6 8.8843 -5.1723 6.2243 16 6 8.7746 -6.5383 5.5441 17 1 8.2319 -7.2252 6.1934 18 6 10.1558 -7.0813 5.2820 19 7 10.8249 -7.8971 6.0502 20 7 11.9665 -8.1552 5.5173 21 6 12.0813 -7.5083 4.3896 22 7 10.9355 -6.8083 4.2080 23 6 8.0247 -6.3893 4.2188 24 6 6.6224 -5.8384 4.4854 25 6 2.1452 -2.7117 2.5273 26 6 1.6841 -2.0600 1.3988 27 1 -0.3934 0.4418 0.7650 28 1 1.7924 -0.5139 -0.8899 29 1 1.5616 2.4678 -1.2086 30 1 1.5878 2.4586 1.2241 31 1 2.8397 1.0402 2.0555 32 1 3.6543 -0.1190 4.0694 33 1 3.3932 -2.0238 5.5523 34 1 2.6832 -3.5460 4.9634 35 1 4.9701 -4.0828 6.2845 36 1 7.5604 -3.6481 6.9755 37 1 6.9390 -5.3078 7.1406 38 1 9.4270 -4.4855 5.5750 39 1 9.4183 -5.2788 7.1685 40 1 12.9319 -7.5274 3.7244 41 1 10.7175 -6.2295 3.4607 42 1 8.5676 -5.7025 3.5694 43 1 7.9470 -7.3624 3.7339 44 1 6.0797 -6.5252 5.1348 45 1 6.0881 -5.7327 3.5413 46 1 1.9523 -3.7662 2.6586 47 1 1.1312 -2.6054 0.6483 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16624780_12335836.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:32:42 Heat of formation + Delta-G solvation = 22.655198 kcal Electronic energy + Delta-G solvation = -28865.099118 eV Core-core repulsion = 24821.857699 eV Total energy + Delta-G solvation = -4043.241420 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.14768 -41.28489 -40.39955 -39.19817 -37.76313 -35.64905 -34.56748 -34.05693 -32.39362 -31.92439 -31.85714 -30.23172 -28.98009 -25.88404 -24.57664 -24.00385 -23.81143 -23.28852 -22.35626 -21.88835 -21.31568 -20.77069 -19.30236 -18.57470 -18.01816 -17.57050 -16.97430 -16.84791 -16.60324 -16.35882 -16.26387 -16.15931 -15.88949 -15.55205 -15.11143 -15.05564 -14.85937 -14.66999 -14.44757 -14.11713 -13.94711 -13.72828 -13.27927 -13.24620 -13.04691 -12.87595 -12.78860 -12.38887 -12.29035 -12.23448 -12.18333 -11.99227 -11.83686 -11.64109 -11.60003 -11.49632 -11.28223 -10.86883 -10.61003 -10.25033 -10.00211 -9.86350 -9.61415 -4.94071 0.25177 0.46639 0.85863 1.28923 1.56036 1.71050 1.84663 1.89592 1.91141 2.20634 2.79308 3.18193 3.40747 3.55504 3.63460 3.67885 3.81025 3.89387 3.91220 3.96681 4.06469 4.07791 4.16694 4.23362 4.34099 4.35705 4.38570 4.41416 4.44714 4.48375 4.52129 4.55671 4.64630 4.69768 4.73805 4.81775 5.01672 5.02070 5.05289 5.05915 5.09937 5.10402 5.17725 5.28544 5.34612 5.39394 5.54494 5.58760 5.60734 6.03083 6.23345 6.46472 6.63370 7.34540 7.70431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.084 4.084 3 Si 0.764 3.236 4 C -0.125 4.125 5 C -0.125 4.125 6 C -0.110 4.110 7 C -0.069 4.069 8 C -0.100 4.100 9 C 0.515 3.485 10 O -0.575 6.575 11 N -0.717 5.717 12 C 0.147 3.853 13 H 0.070 0.930 14 C -0.115 4.115 15 C -0.102 4.102 16 C 0.003 3.997 17 H 0.108 0.892 18 C 0.191 3.809 19 N -0.343 5.343 20 N -0.354 5.354 21 C 0.169 3.831 22 N -0.569 5.569 23 C -0.108 4.108 24 C -0.121 4.121 25 C -0.116 4.116 26 C -0.108 4.108 27 H 0.386 0.614 28 H 0.118 0.882 29 H -0.302 1.302 30 H -0.278 1.278 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.131 0.869 34 H 0.127 0.873 35 H 0.417 0.583 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.261 0.739 41 H 0.445 0.555 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.055 0.945 46 H 0.131 0.869 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.512 2.849 2.059 3.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.193 4.193 3 Si 0.669 3.331 4 C -0.126 4.126 5 C -0.142 4.142 6 C -0.128 4.128 7 C -0.070 4.070 8 C -0.140 4.140 9 C 0.302 3.698 10 O -0.454 6.454 11 N -0.369 5.369 12 C 0.042 3.958 13 H 0.088 0.912 14 C -0.153 4.153 15 C -0.141 4.141 16 C -0.017 4.017 17 H 0.126 0.874 18 C -0.080 4.080 19 N -0.182 5.182 20 N -0.193 5.193 21 C -0.122 4.122 22 N -0.184 5.184 23 C -0.146 4.146 24 C -0.160 4.160 25 C -0.134 4.134 26 C -0.126 4.126 27 H 0.235 0.765 28 H 0.136 0.864 29 H -0.231 1.231 30 H -0.204 1.204 31 H 0.156 0.844 32 H 0.159 0.841 33 H 0.149 0.851 34 H 0.145 0.855 35 H 0.254 0.746 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.277 0.723 41 H 0.288 0.712 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.098 0.902 45 H 0.073 0.927 46 H 0.149 0.851 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.156 2.467 2.057 3.216 hybrid contribution -1.472 0.601 -0.888 1.821 sum -1.316 3.068 1.169 3.537 Atomic orbital electron populations 1.86565 1.18526 1.80436 1.50153 1.25225 0.83435 1.11975 0.98669 0.93956 0.90562 0.72070 0.76477 1.20309 1.00257 0.95031 0.96975 1.21187 0.98522 1.00250 0.94273 1.21218 0.99189 0.94358 0.98057 1.19591 0.97319 0.93942 0.96125 1.20766 0.93134 1.02722 0.97344 1.20908 0.87908 0.77229 0.83749 1.90738 1.69381 1.59265 1.25973 1.45980 1.17763 1.56050 1.17108 1.20932 0.83001 0.94509 0.97345 0.91167 1.21728 0.94710 1.02985 0.95907 1.21480 0.97635 0.93916 1.01116 1.19825 0.84991 0.97935 0.98994 0.87419 1.25231 0.97815 0.98466 0.86456 1.74186 1.01503 1.16231 1.26324 1.74191 1.12955 1.23266 1.08886 1.27290 0.92900 0.93596 0.98390 1.44099 1.14285 1.38572 1.21419 1.21530 0.95802 1.01911 0.95397 1.21811 0.96454 0.96617 1.01093 1.21233 0.98079 1.00244 0.93827 1.21098 0.99345 0.94168 0.97961 0.76515 0.86381 1.23082 1.20440 0.84402 0.84131 0.85133 0.85528 0.74588 0.89838 0.89284 0.91297 0.91055 0.72324 0.71171 0.90939 0.91094 0.90211 0.92658 0.85069 0.85967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.32 12.83 -148.98 -1.91 -4.23 16 2 C -0.08 -0.14 2.80 71.24 0.20 0.06 16 3 Si 0.76 -0.26 29.88 68.60 2.05 1.78 16 4 C -0.13 -0.31 5.35 -19.86 -0.11 -0.41 16 5 C -0.12 -0.10 8.67 22.27 0.19 0.10 16 6 C -0.11 0.01 9.70 22.27 0.22 0.23 16 7 C -0.07 0.02 4.37 -19.87 -0.09 -0.06 16 8 C -0.10 0.70 5.83 29.10 0.17 0.87 16 9 C 0.51 -1.06 7.79 87.66 0.68 -0.38 16 10 O -0.57 -4.39 15.70 -3.03 -0.05 -4.44 16 11 N -0.72 5.52 5.08 -442.54 -2.25 3.28 16 12 C 0.15 -0.93 2.45 44.99 0.11 -0.82 16 13 H 0.07 -0.12 7.58 -2.39 -0.02 -0.14 16 14 C -0.12 1.09 5.39 30.60 0.16 1.25 16 15 C -0.10 0.67 5.19 30.60 0.16 0.82 16 16 C 0.00 -0.02 2.66 -11.54 -0.03 -0.05 16 17 H 0.11 -0.42 8.14 -2.39 -0.02 -0.44 16 18 C 0.19 0.26 6.99 137.98 0.96 1.23 16 19 N -0.34 -3.60 12.21 -50.15 -0.61 -4.21 16 20 N -0.35 -3.60 12.21 -60.00 -0.73 -4.33 16 21 C 0.17 -0.12 13.19 180.11 2.37 2.26 16 22 N -0.57 2.27 5.96 -189.87 -1.13 1.14 16 23 C -0.11 0.70 4.97 30.59 0.15 0.85 16 24 C -0.12 0.68 5.50 30.60 0.17 0.85 16 25 C -0.12 -0.18 9.70 22.27 0.22 0.03 16 26 C -0.11 -0.37 9.69 22.27 0.22 -0.15 16 27 H 0.39 -0.65 8.70 -74.06 -0.64 -1.29 16 28 H 0.12 0.11 7.96 -2.39 -0.02 0.09 16 29 H -0.30 -2.16 7.11 99.48 0.71 -1.45 16 30 H -0.28 -0.68 7.01 99.48 0.70 0.01 16 31 H 0.14 -0.37 4.85 -2.91 -0.01 -0.38 16 32 H 0.14 -0.60 8.06 -2.91 -0.02 -0.63 16 33 H 0.13 -1.57 8.09 -2.38 -0.02 -1.59 16 34 H 0.13 -1.43 8.09 -2.39 -0.02 -1.45 16 35 H 0.42 -5.76 8.60 -92.71 -0.80 -6.56 16 36 H 0.08 -0.83 8.14 -2.39 -0.02 -0.85 16 37 H 0.09 -1.02 8.14 -2.39 -0.02 -1.04 16 38 H 0.07 -0.46 8.14 -2.39 -0.02 -0.48 16 39 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 40 H 0.26 -2.74 8.06 -2.91 -0.02 -2.77 16 41 H 0.45 -4.97 8.29 -92.70 -0.77 -5.74 16 42 H 0.07 -0.57 7.52 -2.39 -0.02 -0.59 16 43 H 0.07 -0.38 8.14 -2.39 -0.02 -0.40 16 44 H 0.08 -0.57 8.14 -2.39 -0.02 -0.59 16 45 H 0.05 -0.05 8.14 -2.39 -0.02 -0.07 16 46 H 0.13 -0.19 8.06 -2.91 -0.02 -0.21 16 47 H 0.12 0.35 8.06 -2.91 -0.02 0.33 16 Total: 0.00 -30.84 385.25 -0.03 -30.87 By element: Atomic # 1 Polarization: -25.38 SS G_CDS: -1.16 Total: -26.54 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: 5.76 Total: 6.68 kcal Atomic # 7 Polarization: 0.60 SS G_CDS: -4.72 Total: -4.12 kcal Atomic # 8 Polarization: -6.71 SS G_CDS: -1.96 Total: -8.67 kcal Atomic # 14 Polarization: -0.26 SS G_CDS: 2.05 Total: 1.78 kcal Total: -30.84 -0.03 -30.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16624780_12335836.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.529 kcal (2) G-P(sol) polarization free energy of solvation -30.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds