Wall clock time and date at job start Sun Mar 7 2021 05:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86307 * 109.46642 * 2 1 4 4 C 1.50699 * 109.47152 * 119.99947 * 2 1 3 5 5 C 1.34456 * 126.48151 * 255.04514 * 4 2 1 6 6 N 1.36557 * 109.98238 * 179.97438 * 5 4 2 7 7 C 1.37825 * 109.86327 * 359.97438 * 6 5 4 8 8 C 1.38655 * 133.37985 * 180.27775 * 7 6 5 9 9 C 1.39317 * 119.66042 * 180.19762 * 8 7 6 10 10 C 1.47576 * 119.82866 * 179.77439 * 9 8 7 11 11 O 1.21590 * 120.00063 * 359.72669 * 10 9 8 12 12 N 1.34783 * 120.00039 * 179.73000 * 10 9 8 13 13 C 1.46506 * 119.99811 * 180.02562 * 12 10 9 14 14 H 1.08993 * 109.47068 * 34.99431 * 13 12 10 15 15 C 1.52999 * 109.46691 * 155.00013 * 13 12 10 16 16 C 1.53006 * 109.46626 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.47127 * 299.99539 * 16 15 13 18 18 H 1.08996 * 109.46952 * 300.00302 * 17 16 15 19 19 C 1.50696 * 109.47055 * 180.02562 * 17 16 15 20 20 N 1.30520 * 126.35100 * 95.02626 * 19 17 16 21 21 N 1.28590 * 109.67340 * 179.97438 * 20 19 17 22 22 C 1.30521 * 109.67695 * 359.97438 * 21 20 19 23 23 N 1.35487 * 107.30195 * 359.77322 * 22 21 20 24 24 C 1.53002 * 109.46817 * 60.00361 * 17 16 15 25 25 C 1.52996 * 109.46972 * 299.99733 * 24 17 16 26 26 C 1.40201 * 120.34005 * 359.50005 * 9 8 7 27 27 C 1.36234 * 120.37827 * 0.25225 * 26 9 8 28 28 C 1.39876 * 119.95858 * 359.97438 * 27 26 9 29 29 H 0.96700 * 114.00364 * 299.99598 * 1 2 3 30 30 H 1.08999 * 109.47367 * 240.00427 * 2 1 3 31 31 H 1.48503 * 109.99582 * 178.68038 * 3 2 1 32 32 H 1.48496 * 109.99869 * 299.99887 * 3 2 1 33 33 H 1.07998 * 125.00694 * 359.93902 * 5 4 2 34 34 H 0.97006 * 125.06932 * 179.97438 * 6 5 4 35 35 H 1.07993 * 120.16539 * 359.95229 * 8 7 6 36 36 H 0.97000 * 119.99910 * 359.97438 * 12 10 9 37 37 H 1.08993 * 109.47839 * 59.99891 * 15 13 12 38 38 H 1.09000 * 109.47160 * 299.99453 * 15 13 12 39 39 H 1.09001 * 109.46801 * 59.99811 * 16 15 13 40 40 H 1.09001 * 109.46998 * 179.97438 * 16 15 13 41 41 H 1.07994 * 126.34259 * 180.02562 * 22 21 20 42 42 H 0.97012 * 126.97900 * 180.22472 * 23 22 21 43 43 H 1.08996 * 109.47407 * 60.00219 * 24 17 16 44 44 H 1.09000 * 109.46986 * 179.97438 * 24 17 16 45 45 H 1.09001 * 109.46993 * 180.02562 * 25 24 17 46 46 H 1.09000 * 109.47380 * 299.99696 * 25 24 17 47 47 H 1.08002 * 119.80889 * 180.26817 * 26 9 8 48 48 H 1.07999 * 120.01768 * 180.02562 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 2.4609 -0.1362 2.3249 6 7 2.8024 -1.0945 3.2357 7 6 2.4938 -2.3430 2.7400 8 6 2.6256 -3.6275 3.2452 9 6 2.2131 -4.7154 2.4788 10 6 2.3563 -6.0845 3.0108 11 8 2.8378 -6.2611 4.1132 12 7 1.9534 -7.1391 2.2746 13 6 2.0951 -8.4982 2.8029 14 1 1.9309 -8.4880 3.8804 15 6 1.0648 -9.4135 2.1385 16 6 1.2132 -10.8331 2.6899 17 6 2.6219 -11.3508 2.3930 18 1 2.7858 -11.3606 1.3155 19 6 2.7679 -12.7492 2.9355 20 7 2.5943 -13.8589 2.2707 21 7 2.8013 -14.8643 3.0452 22 6 3.1169 -14.4418 4.2391 23 7 3.1100 -13.0875 4.2021 24 6 3.6522 -10.4354 3.0574 25 6 3.5038 -9.0160 2.5061 26 6 1.6575 -4.5158 1.2072 27 6 1.5196 -3.2568 0.7054 28 6 1.9334 -2.1546 1.4608 29 1 -0.3934 0.4416 0.7651 30 1 1.7924 -0.5138 -0.8900 31 1 3.5345 1.7704 0.0321 32 1 1.5613 2.4679 -1.2085 33 1 2.5966 0.9263 2.4629 34 1 3.2027 -0.9223 4.1025 35 1 3.0495 -3.7840 4.2260 36 1 1.5690 -6.9982 1.3952 37 1 1.2290 -9.4237 1.0611 38 1 0.0611 -9.0445 2.3496 39 1 1.0492 -10.8232 3.7674 40 1 0.4789 -11.4852 2.2169 41 1 3.3456 -15.0577 5.0963 42 1 3.3075 -12.4827 4.9345 43 1 3.4883 -10.4257 4.1349 44 1 4.6559 -10.8045 2.8463 45 1 4.2381 -8.3639 2.9790 46 1 3.6679 -9.0257 1.4285 47 1 1.3366 -5.3651 0.6222 48 1 1.0904 -3.1098 -0.2747 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16624780_12335838.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:32:48 Heat of formation + Delta-G solvation = 63.223835 kcal Electronic energy + Delta-G solvation = -31823.599756 eV Core-core repulsion = 27460.239332 eV Total energy + Delta-G solvation = -4363.360424 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.164 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -44.10095 -42.51385 -41.14596 -39.46158 -37.89065 -37.46794 -35.75161 -34.55238 -33.28430 -32.54705 -32.04351 -30.78300 -30.72582 -29.31273 -26.55919 -25.36373 -24.33650 -23.95152 -23.62919 -23.21077 -22.12872 -21.43284 -21.02416 -20.79566 -19.42220 -19.33861 -18.40436 -17.87466 -17.23357 -16.96713 -16.80764 -16.45480 -16.32983 -16.25104 -15.88021 -15.63254 -15.56954 -15.33768 -15.14994 -15.00551 -14.78432 -14.71173 -14.49142 -14.09822 -14.02227 -13.82093 -13.43644 -13.16458 -12.79791 -12.68142 -12.46630 -12.39800 -12.33798 -12.30082 -12.25859 -11.94388 -11.81249 -11.78575 -11.56647 -11.28317 -10.91183 -10.78170 -10.37910 -10.16814 -10.11869 -9.38263 -8.84246 -5.12561 -0.29129 0.36936 0.83721 1.26228 1.34085 1.59764 1.78646 1.84363 1.94857 1.94996 1.98649 2.17403 2.90851 3.10083 3.38655 3.50386 3.52341 3.56236 3.70150 3.71767 3.73364 3.81900 3.83793 3.97503 4.04286 4.07907 4.17498 4.20326 4.23668 4.29524 4.36424 4.39674 4.45628 4.50633 4.51892 4.54354 4.64810 4.71298 4.84090 4.87143 4.91961 4.93442 4.95625 5.09394 5.13621 5.17688 5.21482 5.39177 5.40904 5.49253 5.58217 5.95712 6.05797 6.33125 6.45743 6.62643 7.20226 7.78304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.030 4.030 3 Si 0.684 3.316 4 C -0.211 4.211 5 C 0.077 3.923 6 N -0.584 5.584 7 C 0.081 3.919 8 C -0.056 4.056 9 C -0.122 4.122 10 C 0.565 3.435 11 O -0.539 6.539 12 N -0.723 5.723 13 C 0.144 3.856 14 H 0.091 0.909 15 C -0.126 4.126 16 C -0.106 4.106 17 C -0.003 4.003 18 H 0.110 0.890 19 C 0.186 3.814 20 N -0.291 5.291 21 N -0.296 5.296 22 C 0.154 3.846 23 N -0.581 5.581 24 C -0.114 4.114 25 C -0.128 4.128 26 C -0.113 4.113 27 C -0.073 4.073 28 C -0.063 4.063 29 H 0.377 0.623 30 H 0.111 0.889 31 H -0.256 1.256 32 H -0.254 1.254 33 H 0.179 0.821 34 H 0.422 0.578 35 H 0.136 0.864 36 H 0.402 0.598 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.222 0.778 42 H 0.429 0.571 43 H 0.064 0.936 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.072 0.928 47 H 0.126 0.874 48 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.246 6.512 3.700 7.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.347 6.347 2 C -0.141 4.141 3 Si 0.586 3.414 4 C -0.219 4.219 5 C -0.052 4.052 6 N -0.186 5.186 7 C -0.025 4.025 8 C -0.078 4.078 9 C -0.127 4.127 10 C 0.354 3.646 11 O -0.417 6.417 12 N -0.374 5.374 13 C 0.040 3.960 14 H 0.109 0.891 15 C -0.164 4.164 16 C -0.145 4.145 17 C -0.024 4.024 18 H 0.128 0.872 19 C -0.083 4.083 20 N -0.131 5.131 21 N -0.135 5.135 22 C -0.135 4.135 23 N -0.194 5.194 24 C -0.153 4.153 25 C -0.166 4.166 26 C -0.133 4.133 27 C -0.091 4.091 28 C -0.068 4.068 29 H 0.224 0.776 30 H 0.129 0.871 31 H -0.181 1.181 32 H -0.179 1.179 33 H 0.196 0.804 34 H 0.260 0.740 35 H 0.153 0.847 36 H 0.238 0.762 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.099 0.901 41 H 0.239 0.761 42 H 0.269 0.731 43 H 0.083 0.917 44 H 0.093 0.907 45 H 0.094 0.906 46 H 0.090 0.910 47 H 0.144 0.856 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.398 5.612 2.357 6.100 hybrid contribution 0.603 0.595 1.439 1.670 sum 1.001 6.206 3.796 7.344 Atomic orbital electron populations 1.86508 1.17412 1.81753 1.49015 1.24332 0.84763 1.08860 0.96167 0.95283 0.80747 0.77363 0.88039 1.20737 1.10812 0.92145 0.98183 1.21752 0.99740 0.94349 0.89315 1.41720 1.54684 1.04025 1.18199 1.18081 1.03257 0.86318 0.94874 1.20072 0.99521 0.88095 1.00083 1.19422 1.05123 0.92331 0.95808 1.18155 0.77380 0.84559 0.84551 1.90785 1.44418 1.86251 1.20218 1.45951 1.64472 1.05834 1.21183 1.21033 0.94799 0.80331 0.99829 0.89132 1.21814 0.99339 0.94182 1.01095 1.21526 0.95364 0.95803 1.01836 1.19786 0.96536 0.84261 1.01837 0.87167 1.24870 1.02248 0.98742 0.82442 1.74303 1.18909 0.94422 1.25505 1.74303 1.16441 1.23087 0.99715 1.26579 1.04244 0.81926 1.00799 1.44138 1.53405 1.09042 1.12785 1.21598 0.98978 0.94671 1.00071 1.21900 0.97265 0.95426 1.02046 1.20688 1.00556 0.97339 0.94733 1.20211 0.98713 0.90510 0.99682 1.19178 1.00955 0.93082 0.93607 0.77578 0.87129 1.18090 1.17858 0.80427 0.74006 0.84660 0.76246 0.90531 0.90375 0.91463 0.90126 0.76124 0.73123 0.91693 0.90738 0.90634 0.90951 0.85615 0.85205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.11 12.88 -35.23 -0.45 -0.34 16 2 C -0.03 0.03 3.06 36.01 0.11 0.14 16 3 Si 0.68 -1.54 30.75 -169.99 -5.23 -6.77 16 4 C -0.21 0.08 5.57 -102.74 -0.57 -0.49 16 5 C 0.08 -0.19 10.43 -16.78 -0.18 -0.37 16 6 N -0.58 1.09 6.06 -10.68 -0.06 1.02 16 7 C 0.08 0.07 7.26 -84.00 -0.61 -0.54 16 8 C -0.06 -0.08 9.61 -39.03 -0.37 -0.46 16 9 C -0.12 -0.15 5.87 -104.95 -0.62 -0.77 16 10 C 0.57 1.05 7.72 -12.45 -0.10 0.96 16 11 O -0.54 -2.78 15.97 5.29 0.08 -2.69 16 12 N -0.72 0.86 5.03 -54.83 -0.28 0.59 16 13 C 0.14 -0.24 2.46 -67.93 -0.17 -0.41 16 14 H 0.09 0.00 7.58 -51.93 -0.39 -0.40 16 15 C -0.13 0.41 5.39 -26.73 -0.14 0.26 16 16 C -0.11 0.26 5.19 -26.73 -0.14 0.12 16 17 C 0.00 0.01 2.66 -91.77 -0.24 -0.24 16 18 H 0.11 -0.16 8.14 -51.93 -0.42 -0.59 16 19 C 0.19 0.17 6.99 -154.99 -1.08 -0.92 16 20 N -0.29 -1.44 12.21 32.79 0.40 -1.04 16 21 N -0.30 -1.44 12.21 29.68 0.36 -1.07 16 22 C 0.15 0.02 13.19 -89.95 -1.19 -1.17 16 23 N -0.58 0.85 5.96 -11.37 -0.07 0.78 16 24 C -0.11 0.30 4.97 -26.73 -0.13 0.16 16 25 C -0.13 0.23 5.49 -26.73 -0.15 0.08 16 26 C -0.11 0.03 9.46 -39.57 -0.37 -0.34 16 27 C -0.07 -0.05 10.03 -39.69 -0.40 -0.44 16 28 C -0.06 -0.08 6.35 -105.05 -0.67 -0.75 16 29 H 0.38 -1.54 8.70 45.56 0.40 -1.14 16 30 H 0.11 -0.01 7.96 -51.93 -0.41 -0.42 16 31 H -0.26 -0.07 7.11 56.52 0.40 0.33 16 32 H -0.25 -0.35 7.11 56.52 0.40 0.05 16 33 H 0.18 -1.09 6.35 -52.49 -0.33 -1.43 16 34 H 0.42 -1.94 8.96 -40.82 -0.37 -2.31 16 35 H 0.14 0.17 7.62 -52.49 -0.40 -0.23 16 36 H 0.40 -1.38 6.59 -40.82 -0.27 -1.65 16 37 H 0.08 -0.30 8.14 -51.93 -0.42 -0.72 16 38 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 16 39 H 0.07 -0.17 8.14 -51.93 -0.42 -0.60 16 40 H 0.08 -0.12 8.14 -51.93 -0.42 -0.55 16 41 H 0.22 -0.94 8.06 -52.49 -0.42 -1.36 16 42 H 0.43 -2.05 8.28 -40.81 -0.34 -2.39 16 43 H 0.06 -0.21 7.52 -51.93 -0.39 -0.60 16 44 H 0.07 -0.16 8.14 -51.93 -0.42 -0.58 16 45 H 0.07 0.01 8.14 -51.93 -0.42 -0.41 16 46 H 0.07 -0.16 8.14 -51.93 -0.42 -0.58 16 47 H 0.13 -0.39 6.36 -52.49 -0.33 -0.72 16 48 H 0.13 -0.05 8.06 -52.49 -0.42 -0.47 16 LS Contribution 394.15 15.07 5.94 5.94 Total: 0.00 -13.62 394.15 -12.58 -26.21 By element: Atomic # 1 Polarization: -11.18 SS G_CDS: -6.27 Total: -17.45 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -7.02 Total: -5.17 kcal Atomic # 7 Polarization: -0.07 SS G_CDS: 0.36 Total: 0.28 kcal Atomic # 8 Polarization: -2.66 SS G_CDS: -0.37 Total: -3.03 kcal Atomic # 14 Polarization: -1.54 SS G_CDS: -5.23 Total: -6.77 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -13.62 -12.58 -26.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16624780_12335838.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.429 kcal (2) G-P(sol) polarization free energy of solvation -13.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds