Wall clock time and date at job start Sun Mar 7 2021 05:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86307 * 109.46642 * 2 1 4 4 C 1.50699 * 109.47152 * 119.99947 * 2 1 3 5 5 C 1.34456 * 126.48151 * 255.04514 * 4 2 1 6 6 N 1.36557 * 109.98238 * 179.97438 * 5 4 2 7 7 C 1.37825 * 109.86327 * 359.97438 * 6 5 4 8 8 C 1.38655 * 133.37985 * 180.27775 * 7 6 5 9 9 C 1.39317 * 119.66042 * 180.19762 * 8 7 6 10 10 C 1.47576 * 119.82866 * 179.77439 * 9 8 7 11 11 O 1.21590 * 120.00063 * 359.72669 * 10 9 8 12 12 N 1.34783 * 120.00039 * 179.73000 * 10 9 8 13 13 C 1.46506 * 119.99811 * 180.02562 * 12 10 9 14 14 H 1.08993 * 109.47068 * 34.99431 * 13 12 10 15 15 C 1.52999 * 109.46691 * 155.00013 * 13 12 10 16 16 C 1.53006 * 109.46626 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.47127 * 299.99539 * 16 15 13 18 18 H 1.08996 * 109.46952 * 300.00302 * 17 16 15 19 19 C 1.50696 * 109.47055 * 180.02562 * 17 16 15 20 20 N 1.30520 * 126.35100 * 95.02626 * 19 17 16 21 21 N 1.28590 * 109.67340 * 179.97438 * 20 19 17 22 22 C 1.30521 * 109.67695 * 359.97438 * 21 20 19 23 23 N 1.35487 * 107.30195 * 359.77322 * 22 21 20 24 24 C 1.53002 * 109.46817 * 60.00361 * 17 16 15 25 25 C 1.52996 * 109.46972 * 299.99733 * 24 17 16 26 26 C 1.40201 * 120.34005 * 359.50005 * 9 8 7 27 27 C 1.36234 * 120.37827 * 0.25225 * 26 9 8 28 28 C 1.39876 * 119.95858 * 359.97438 * 27 26 9 29 29 H 0.96700 * 114.00364 * 299.99598 * 1 2 3 30 30 H 1.08999 * 109.47367 * 240.00427 * 2 1 3 31 31 H 1.48503 * 109.99582 * 178.68038 * 3 2 1 32 32 H 1.48496 * 109.99869 * 299.99887 * 3 2 1 33 33 H 1.07998 * 125.00694 * 359.93902 * 5 4 2 34 34 H 0.97006 * 125.06932 * 179.97438 * 6 5 4 35 35 H 1.07993 * 120.16539 * 359.95229 * 8 7 6 36 36 H 0.97000 * 119.99910 * 359.97438 * 12 10 9 37 37 H 1.08993 * 109.47839 * 59.99891 * 15 13 12 38 38 H 1.09000 * 109.47160 * 299.99453 * 15 13 12 39 39 H 1.09001 * 109.46801 * 59.99811 * 16 15 13 40 40 H 1.09001 * 109.46998 * 179.97438 * 16 15 13 41 41 H 1.07994 * 126.34259 * 180.02562 * 22 21 20 42 42 H 0.97012 * 126.97900 * 180.22472 * 23 22 21 43 43 H 1.08996 * 109.47407 * 60.00219 * 24 17 16 44 44 H 1.09000 * 109.46986 * 179.97438 * 24 17 16 45 45 H 1.09001 * 109.46993 * 180.02562 * 25 24 17 46 46 H 1.09000 * 109.47380 * 299.99696 * 25 24 17 47 47 H 1.08002 * 119.80889 * 180.26817 * 26 9 8 48 48 H 1.07999 * 120.01768 * 180.02562 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 2.4609 -0.1362 2.3249 6 7 2.8024 -1.0945 3.2357 7 6 2.4938 -2.3430 2.7400 8 6 2.6256 -3.6275 3.2452 9 6 2.2131 -4.7154 2.4788 10 6 2.3563 -6.0845 3.0108 11 8 2.8378 -6.2611 4.1132 12 7 1.9534 -7.1391 2.2746 13 6 2.0951 -8.4982 2.8029 14 1 1.9309 -8.4880 3.8804 15 6 1.0648 -9.4135 2.1385 16 6 1.2132 -10.8331 2.6899 17 6 2.6219 -11.3508 2.3930 18 1 2.7858 -11.3606 1.3155 19 6 2.7679 -12.7492 2.9355 20 7 2.5943 -13.8589 2.2707 21 7 2.8013 -14.8643 3.0452 22 6 3.1169 -14.4418 4.2391 23 7 3.1100 -13.0875 4.2021 24 6 3.6522 -10.4354 3.0574 25 6 3.5038 -9.0160 2.5061 26 6 1.6575 -4.5158 1.2072 27 6 1.5196 -3.2568 0.7054 28 6 1.9334 -2.1546 1.4608 29 1 -0.3934 0.4416 0.7651 30 1 1.7924 -0.5138 -0.8900 31 1 3.5345 1.7704 0.0321 32 1 1.5613 2.4679 -1.2085 33 1 2.5966 0.9263 2.4629 34 1 3.2027 -0.9223 4.1025 35 1 3.0495 -3.7840 4.2260 36 1 1.5690 -6.9982 1.3952 37 1 1.2290 -9.4237 1.0611 38 1 0.0611 -9.0445 2.3496 39 1 1.0492 -10.8232 3.7674 40 1 0.4789 -11.4852 2.2169 41 1 3.3456 -15.0577 5.0963 42 1 3.3075 -12.4827 4.9345 43 1 3.4883 -10.4257 4.1349 44 1 4.6559 -10.8045 2.8463 45 1 4.2381 -8.3639 2.9790 46 1 3.6679 -9.0257 1.4285 47 1 1.3366 -5.3651 0.6222 48 1 1.0904 -3.1098 -0.2747 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16624780_12335838.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:32:46 Heat of formation + Delta-G solvation = 59.983641 kcal Electronic energy + Delta-G solvation = -31823.740261 eV Core-core repulsion = 27460.239332 eV Total energy + Delta-G solvation = -4363.500929 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.164 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -44.15131 -42.44421 -41.16442 -39.41497 -37.85206 -37.42270 -35.78203 -34.58404 -33.23550 -32.55775 -31.88359 -30.77249 -30.69291 -29.29424 -26.47437 -25.32901 -24.29948 -23.84908 -23.60056 -23.20335 -22.11279 -21.43367 -20.95074 -20.69654 -19.37105 -19.28780 -18.34128 -17.81162 -17.19729 -16.94806 -16.85090 -16.43944 -16.30665 -16.20406 -15.86462 -15.56316 -15.51244 -15.22634 -15.05730 -14.97342 -14.75620 -14.69859 -14.40991 -14.03716 -13.99611 -13.72358 -13.29385 -13.08493 -12.83107 -12.65095 -12.40426 -12.30758 -12.27303 -12.24903 -12.20170 -11.92010 -11.83985 -11.67377 -11.51699 -11.31592 -11.03574 -10.77095 -10.28838 -10.25908 -10.12936 -9.34936 -8.77594 -4.97094 -0.30740 0.38226 0.85516 1.39508 1.43189 1.71889 1.84557 1.88081 1.92395 1.94371 2.06077 2.27191 2.88062 3.16361 3.50945 3.63194 3.64940 3.67184 3.75950 3.84223 3.91470 3.93597 3.98351 4.12188 4.13647 4.20946 4.30061 4.32335 4.33573 4.39994 4.43375 4.49171 4.49973 4.56785 4.59853 4.66277 4.77534 4.79838 4.97196 5.00162 5.00715 5.04065 5.07892 5.15894 5.21632 5.26806 5.29876 5.42588 5.45774 5.54570 5.62870 5.99364 6.23276 6.49017 6.55872 6.91115 7.15906 7.70314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.562 6.562 2 C -0.039 4.039 3 Si 0.793 3.207 4 C -0.236 4.236 5 C 0.096 3.904 6 N -0.577 5.577 7 C 0.066 3.934 8 C -0.067 4.067 9 C -0.138 4.138 10 C 0.564 3.436 11 O -0.579 6.579 12 N -0.709 5.709 13 C 0.146 3.854 14 H 0.075 0.925 15 C -0.117 4.117 16 C -0.101 4.101 17 C 0.003 3.997 18 H 0.108 0.892 19 C 0.191 3.809 20 N -0.342 5.342 21 N -0.354 5.354 22 C 0.169 3.831 23 N -0.569 5.569 24 C -0.106 4.106 25 C -0.122 4.122 26 C -0.107 4.107 27 C -0.088 4.088 28 C -0.083 4.083 29 H 0.393 0.607 30 H 0.096 0.904 31 H -0.285 1.285 32 H -0.306 1.306 33 H 0.219 0.781 34 H 0.435 0.565 35 H 0.129 0.871 36 H 0.414 0.586 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.261 0.739 42 H 0.445 0.555 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.055 0.945 46 H 0.079 0.921 47 H 0.152 0.848 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.350 7.664 4.413 8.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.369 6.369 2 C -0.148 4.148 3 Si 0.699 3.301 4 C -0.243 4.243 5 C -0.033 4.033 6 N -0.181 5.181 7 C -0.041 4.041 8 C -0.088 4.088 9 C -0.142 4.142 10 C 0.353 3.647 11 O -0.461 6.461 12 N -0.360 5.360 13 C 0.041 3.959 14 H 0.093 0.907 15 C -0.155 4.155 16 C -0.140 4.140 17 C -0.018 4.018 18 H 0.126 0.874 19 C -0.080 4.080 20 N -0.182 5.182 21 N -0.193 5.193 22 C -0.121 4.121 23 N -0.183 5.183 24 C -0.145 4.145 25 C -0.161 4.161 26 C -0.127 4.127 27 C -0.107 4.107 28 C -0.088 4.088 29 H 0.243 0.757 30 H 0.113 0.887 31 H -0.212 1.212 32 H -0.234 1.234 33 H 0.235 0.765 34 H 0.275 0.725 35 H 0.147 0.853 36 H 0.252 0.748 37 H 0.108 0.892 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.277 0.723 42 H 0.289 0.711 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.074 0.926 46 H 0.098 0.902 47 H 0.170 0.830 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.271 6.739 3.089 7.418 hybrid contribution 0.638 0.273 1.214 1.398 sum 0.909 7.012 4.303 8.278 Atomic orbital electron populations 1.86462 1.17893 1.82305 1.50267 1.24529 0.84607 1.10139 0.95565 0.94083 0.77099 0.73656 0.85279 1.20853 1.12612 0.91582 0.99280 1.22353 0.97168 0.95789 0.88025 1.41816 1.54113 1.03264 1.18864 1.18136 1.03889 0.86947 0.95138 1.20148 0.99837 0.88792 1.00041 1.19494 1.06126 0.92001 0.96574 1.18308 0.76954 0.85298 0.84178 1.90756 1.46535 1.86798 1.21967 1.45875 1.63315 1.05497 1.21343 1.21047 0.95412 0.80240 0.99152 0.90698 1.21747 0.98981 0.93109 1.01644 1.21470 0.94559 0.95937 1.02046 1.19815 0.97191 0.83093 1.01677 0.87388 1.25194 1.00992 0.98784 0.82988 1.74185 1.21179 0.95631 1.27184 1.74189 1.19195 1.24238 1.01697 1.27292 1.01674 0.82653 1.00518 1.44096 1.52620 1.08983 1.12631 1.21526 0.98611 0.93818 1.00561 1.21824 0.96561 0.95374 1.02337 1.20908 0.99550 0.98021 0.94201 1.20402 0.99281 0.90883 1.00084 1.19578 1.00980 0.94272 0.93960 0.75722 0.88657 1.21204 1.23408 0.76506 0.72474 0.85270 0.74782 0.89208 0.89834 0.91129 0.90858 0.72289 0.71145 0.90718 0.90873 0.92577 0.90192 0.83035 0.84708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.25 12.88 -148.98 -1.92 -1.67 16 2 C -0.04 0.07 3.06 71.24 0.22 0.28 16 3 Si 0.79 -4.13 30.75 68.60 2.11 -2.02 16 4 C -0.24 0.26 5.57 -18.65 -0.10 0.16 16 5 C 0.10 -0.61 10.43 83.09 0.87 0.25 16 6 N -0.58 2.52 6.06 -187.71 -1.14 1.38 16 7 C 0.07 0.14 7.26 38.96 0.28 0.43 16 8 C -0.07 -0.29 9.61 22.63 0.22 -0.07 16 9 C -0.14 -0.48 5.87 -20.08 -0.12 -0.60 16 10 C 0.56 2.70 7.72 86.71 0.67 3.37 16 11 O -0.58 -7.00 15.97 -4.00 -0.06 -7.06 16 12 N -0.71 1.60 5.03 -445.65 -2.24 -0.64 16 13 C 0.15 -0.49 2.46 44.99 0.11 -0.38 16 14 H 0.07 0.04 7.58 -2.39 -0.02 0.02 16 15 C -0.12 0.83 5.39 30.60 0.16 1.00 16 16 C -0.10 0.52 5.19 30.60 0.16 0.68 16 17 C 0.00 -0.01 2.66 -11.54 -0.03 -0.04 16 18 H 0.11 -0.30 8.14 -2.39 -0.02 -0.32 16 19 C 0.19 0.41 6.99 137.98 0.96 1.37 16 20 N -0.34 -3.82 12.21 -50.16 -0.61 -4.43 16 21 N -0.35 -3.79 12.21 -60.00 -0.73 -4.53 16 22 C 0.17 -0.04 13.19 180.11 2.38 2.34 16 23 N -0.57 1.96 5.96 -189.87 -1.13 0.83 16 24 C -0.11 0.57 4.97 30.59 0.15 0.72 16 25 C -0.12 0.42 5.49 30.59 0.17 0.59 16 26 C -0.11 0.02 9.46 22.28 0.21 0.23 16 27 C -0.09 -0.17 10.03 22.20 0.22 0.05 16 28 C -0.08 -0.26 6.35 -20.14 -0.13 -0.38 16 29 H 0.39 -3.45 8.70 -74.06 -0.64 -4.10 16 30 H 0.10 0.07 7.96 -2.39 -0.02 0.05 16 31 H -0.29 0.10 7.11 99.48 0.71 0.81 16 32 H -0.31 -1.06 7.11 99.48 0.71 -0.35 16 33 H 0.22 -3.34 6.35 -2.91 -0.02 -3.36 16 34 H 0.43 -4.36 8.96 -92.70 -0.83 -5.19 16 35 H 0.13 0.59 7.62 -2.91 -0.02 0.56 16 36 H 0.41 -3.13 6.59 -92.71 -0.61 -3.74 16 37 H 0.09 -0.83 8.14 -2.39 -0.02 -0.85 16 38 H 0.08 -0.62 8.14 -2.39 -0.02 -0.64 16 39 H 0.07 -0.40 8.14 -2.39 -0.02 -0.41 16 40 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 41 H 0.26 -2.64 8.06 -2.91 -0.02 -2.67 16 42 H 0.45 -4.76 8.28 -92.70 -0.77 -5.53 16 43 H 0.07 -0.53 7.52 -2.39 -0.02 -0.55 16 44 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 45 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 46 H 0.08 -0.39 8.14 -2.39 -0.02 -0.40 16 47 H 0.15 -1.03 6.36 -2.91 -0.02 -1.05 16 48 H 0.14 0.01 8.06 -2.91 -0.02 -0.02 16 Total: 0.00 -35.33 394.15 -1.08 -36.41 By element: Atomic # 1 Polarization: -26.51 SS G_CDS: -1.76 Total: -28.27 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: 6.40 Total: 9.99 kcal Atomic # 7 Polarization: -1.52 SS G_CDS: -5.85 Total: -7.38 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: -1.98 Total: -8.74 kcal Atomic # 14 Polarization: -4.13 SS G_CDS: 2.11 Total: -2.02 kcal Total: -35.33 -1.08 -36.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16624780_12335838.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.392 kcal (2) G-P(sol) polarization free energy of solvation -35.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds