Wall clock time and date at job start Sun Mar 7 2021 05:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86302 * 109.46915 * 2 1 4 4 C 1.50695 * 109.47189 * 239.99762 * 2 1 3 5 5 C 1.38330 * 119.92093 * 120.00294 * 4 2 1 6 6 C 1.38461 * 120.27999 * 179.97438 * 5 4 2 7 7 Br 1.89103 * 119.93321 * 179.97438 * 6 5 4 8 8 C 1.38028 * 120.12642 * 359.97438 * 6 5 4 9 9 C 1.39584 * 119.84286 * 0.02562 * 8 6 5 10 10 C 1.47851 * 120.13756 * 179.97438 * 9 8 6 11 11 O 1.21551 * 119.99713 * 179.97438 * 10 9 8 12 12 N 1.34776 * 119.99914 * 359.97438 * 10 9 8 13 13 C 1.46507 * 119.99714 * 179.97438 * 12 10 9 14 14 H 1.08999 * 109.47215 * 325.00357 * 13 12 10 15 15 C 1.53006 * 109.46637 * 85.00275 * 13 12 10 16 16 C 1.52997 * 109.46803 * 179.97438 * 15 13 12 17 17 C 1.52995 * 109.47253 * 300.00295 * 16 15 13 18 18 H 1.08999 * 109.46957 * 299.99844 * 17 16 15 19 19 C 1.50700 * 109.47187 * 179.97438 * 17 16 15 20 20 N 1.30519 * 126.34573 * 144.96877 * 19 17 16 21 21 N 1.28604 * 109.67489 * 180.02562 * 20 19 17 22 22 C 1.30518 * 109.66680 * 0.02562 * 21 20 19 23 23 N 1.35487 * 107.31212 * 0.02562 * 22 21 20 24 24 C 1.52997 * 109.47362 * 60.00007 * 17 16 15 25 25 C 1.52989 * 109.46917 * 205.00055 * 13 12 10 26 26 C 1.37980 * 119.92337 * 300.25287 * 4 2 1 27 27 H 0.96699 * 113.99487 * 60.00489 * 1 2 3 28 28 H 1.09000 * 109.47260 * 119.99370 * 2 1 3 29 29 H 1.48505 * 109.99805 * 298.67689 * 3 2 1 30 30 H 1.48498 * 110.00177 * 59.99483 * 3 2 1 31 31 H 1.08004 * 119.85372 * 0.02562 * 5 4 2 32 32 H 1.08004 * 120.07491 * 179.97438 * 8 6 5 33 33 H 0.97001 * 120.00300 * 0.02562 * 12 10 9 34 34 H 1.09001 * 109.47196 * 299.99700 * 15 13 12 35 35 H 1.08999 * 109.47251 * 60.00104 * 15 13 12 36 36 H 1.09001 * 109.47111 * 179.97438 * 16 15 13 37 37 H 1.08999 * 109.47011 * 60.00105 * 16 15 13 38 38 H 1.08000 * 126.34337 * 179.97438 * 22 21 20 39 39 H 0.97003 * 126.98189 * 179.97438 * 23 22 21 40 40 H 1.08999 * 109.47218 * 59.99996 * 24 17 16 41 41 H 1.09001 * 109.47102 * 180.02562 * 24 17 16 42 42 H 1.08998 * 109.47586 * 60.00641 * 25 13 12 43 43 H 1.08999 * 109.47425 * 300.00174 * 25 13 12 44 44 H 1.08001 * 120.06241 * 0.02562 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 2.7266 -0.0366 -2.1399 6 6 3.1927 -0.6823 -3.2726 7 35 4.2786 0.2484 -4.5097 8 6 2.8662 -2.0039 -3.5004 9 6 2.0641 -2.6888 -2.5861 10 6 1.7099 -4.1044 -2.8240 11 8 1.0117 -4.6985 -2.0259 12 7 2.1613 -4.7361 -3.9257 13 6 1.8108 -6.1390 -4.1610 14 1 1.7635 -6.6664 -3.2083 15 6 0.4489 -6.2149 -4.8542 16 6 0.0831 -7.6799 -5.1006 17 6 1.1453 -8.3281 -5.9907 18 1 1.1925 -7.8002 -6.9432 19 6 0.7854 -9.7713 -6.2329 20 7 0.9942 -10.4470 -7.3298 21 7 0.5613 -11.6495 -7.1866 22 6 0.0562 -11.7952 -5.9920 23 7 0.1831 -10.6073 -5.3530 24 6 2.5072 -8.2521 -5.2976 25 6 2.8729 -6.7875 -5.0509 26 6 1.5928 -2.0299 -1.4498 27 1 -0.3932 0.4416 -0.7651 28 1 1.7924 -0.5137 0.8900 29 1 1.5879 2.4585 -1.2243 30 1 1.5614 2.4680 1.2084 31 1 2.9857 0.9972 -1.9651 32 1 3.2299 -2.5066 -4.3844 33 1 2.7189 -4.2621 -4.5624 34 1 -0.3078 -5.7528 -4.2202 35 1 0.4962 -5.6874 -5.8069 36 1 -0.8873 -7.7341 -5.5940 37 1 0.0359 -8.2077 -4.1481 38 1 -0.3825 -12.6956 -5.5880 39 1 -0.0993 -10.3979 -4.4489 40 1 2.4600 -8.7799 -4.3451 41 1 3.2640 -8.7135 -5.9320 42 1 3.8431 -6.7335 -4.5571 43 1 2.9202 -6.2601 -6.0036 44 1 0.9681 -2.5532 -0.7410 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16624780_12335870.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:33:16 Heat of formation + Delta-G solvation = 34.148828 kcal Electronic energy + Delta-G solvation = -29187.315110 eV Core-core repulsion = 24960.291708 eV Total energy + Delta-G solvation = -4227.023403 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 407.063 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -44.15121 -41.68689 -40.41189 -39.18637 -37.81733 -35.86016 -34.61897 -33.60659 -33.41451 -32.10118 -31.88870 -30.44232 -29.60577 -27.03956 -25.75663 -24.39182 -23.90060 -23.24803 -22.80351 -22.12982 -21.47404 -20.88262 -19.31658 -19.16928 -18.10075 -17.65997 -17.39684 -16.86161 -16.69285 -16.44115 -16.34245 -16.23044 -15.88006 -15.67892 -15.18818 -15.14151 -14.96712 -14.82897 -14.26334 -14.17625 -14.06499 -13.70710 -13.30116 -13.27592 -13.01983 -12.84599 -12.43139 -12.30806 -12.29409 -12.20413 -11.95588 -11.84460 -11.83938 -11.68408 -11.52254 -11.45806 -11.31170 -11.13286 -10.72640 -10.37143 -10.25067 -10.09021 -9.89229 -4.97832 -0.50254 -0.15004 0.45004 0.85505 1.20441 1.54287 1.54801 1.84463 1.87594 1.91029 1.99010 2.47981 3.15322 3.25519 3.33632 3.44049 3.56317 3.65366 3.80117 3.84869 3.89256 3.96542 3.98847 4.11564 4.19989 4.22456 4.28631 4.31707 4.34192 4.39820 4.43356 4.50412 4.55649 4.63534 4.77949 4.78474 4.93844 4.98752 5.00175 5.04202 5.07382 5.09616 5.16003 5.25524 5.27429 5.37246 5.45153 6.23056 6.38819 6.41618 7.05760 7.70176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.082 4.082 3 Si 0.760 3.240 4 C -0.114 4.114 5 C -0.062 4.062 6 C -0.099 4.099 7 Br -0.030 7.030 8 C -0.044 4.044 9 C -0.136 4.136 10 C 0.562 3.438 11 O -0.570 6.570 12 N -0.707 5.707 13 C 0.145 3.855 14 H 0.077 0.923 15 C -0.123 4.123 16 C -0.107 4.107 17 C 0.003 3.997 18 H 0.109 0.891 19 C 0.192 3.808 20 N -0.342 5.342 21 N -0.354 5.354 22 C 0.168 3.832 23 N -0.569 5.569 24 C -0.102 4.102 25 C -0.117 4.117 26 C -0.029 4.029 27 H 0.388 0.612 28 H 0.131 0.869 29 H -0.274 1.274 30 H -0.298 1.298 31 H 0.155 0.845 32 H 0.163 0.837 33 H 0.414 0.586 34 H 0.056 0.944 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.261 0.739 39 H 0.445 0.555 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.103 2.894 2.115 4.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.191 4.191 3 Si 0.664 3.336 4 C -0.116 4.116 5 C -0.081 4.081 6 C -0.179 4.179 7 Br 0.056 6.944 8 C -0.064 4.064 9 C -0.140 4.140 10 C 0.349 3.651 11 O -0.450 6.450 12 N -0.359 5.359 13 C 0.041 3.959 14 H 0.095 0.905 15 C -0.161 4.161 16 C -0.146 4.146 17 C -0.018 4.018 18 H 0.127 0.873 19 C -0.079 4.079 20 N -0.182 5.182 21 N -0.193 5.193 22 C -0.122 4.122 23 N -0.184 5.184 24 C -0.141 4.141 25 C -0.155 4.155 26 C -0.049 4.049 27 H 0.237 0.763 28 H 0.149 0.851 29 H -0.200 1.200 30 H -0.226 1.226 31 H 0.172 0.828 32 H 0.181 0.819 33 H 0.252 0.748 34 H 0.075 0.925 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.277 0.723 39 H 0.288 0.712 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.104 0.896 43 H 0.109 0.891 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.392 2.920 1.144 4.620 hybrid contribution -1.925 -0.047 1.258 2.300 sum 1.467 2.873 2.402 4.022 Atomic orbital electron populations 1.86613 1.18163 1.80330 1.50244 1.25270 0.83698 1.11902 0.98201 0.94202 0.90296 0.71859 0.77280 1.20251 0.99356 0.94339 0.97606 1.21376 0.94610 1.00520 0.91634 1.21739 1.03044 0.95871 0.97240 1.96869 1.65622 1.75399 1.56509 1.21477 0.94034 0.92330 0.98565 1.19901 1.02606 0.93911 0.97577 1.18286 0.79237 0.86235 0.81319 1.90797 1.39284 1.67912 1.46975 1.45890 1.52942 1.13286 1.23766 1.21074 0.94736 0.80612 0.99446 0.90523 1.21830 0.96603 0.96283 1.01416 1.21529 0.97966 0.95594 0.99511 1.19828 0.96352 0.83736 1.01887 0.87312 1.25211 0.98428 0.97135 0.87160 1.74187 1.21577 1.00011 1.22439 1.74196 1.15823 1.11481 1.17787 1.27287 1.01928 0.92478 0.90490 1.44097 1.46381 1.10366 1.17524 1.21466 0.94879 0.96928 1.00795 1.21743 0.98201 0.94864 1.00689 1.21252 0.94848 0.93474 0.95297 0.76282 0.85082 1.20048 1.22567 0.82771 0.81945 0.74756 0.92521 0.90048 0.90918 0.90755 0.72348 0.71163 0.91142 0.90840 0.89640 0.89091 0.85051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.54 12.76 -148.98 -1.90 -2.44 16 2 C -0.08 0.22 2.82 71.23 0.20 0.42 16 3 Si 0.76 -3.15 29.78 68.60 2.04 -1.11 16 4 C -0.11 0.28 5.39 -19.91 -0.11 0.17 16 5 C -0.06 0.26 8.41 22.34 0.19 0.44 16 6 C -0.10 0.40 6.22 22.27 0.14 0.54 16 7 Br -0.03 0.11 33.69 -20.37 -0.69 -0.57 16 8 C -0.04 0.23 9.28 22.54 0.21 0.44 16 9 C -0.14 0.13 5.87 -20.09 -0.12 0.01 16 10 C 0.56 0.80 7.74 86.79 0.67 1.47 16 11 O -0.57 -5.47 16.01 -3.88 -0.06 -5.53 16 12 N -0.71 3.80 5.03 -445.40 -2.24 1.56 16 13 C 0.15 -0.82 2.45 44.99 0.11 -0.71 16 14 H 0.08 -0.13 7.58 -2.39 -0.02 -0.15 16 15 C -0.12 0.65 5.50 30.60 0.17 0.82 16 16 C -0.11 0.71 4.97 30.59 0.15 0.86 16 17 C 0.00 -0.01 2.66 -11.54 -0.03 -0.04 16 18 H 0.11 -0.45 8.14 -2.39 -0.02 -0.47 16 19 C 0.19 0.24 6.99 137.98 0.96 1.20 16 20 N -0.34 -3.57 12.21 -50.15 -0.61 -4.18 16 21 N -0.35 -3.58 12.21 -59.99 -0.73 -4.32 16 22 C 0.17 -0.12 13.19 180.12 2.37 2.25 16 23 N -0.57 2.33 5.96 -189.87 -1.13 1.20 16 24 C -0.10 0.68 5.18 30.58 0.16 0.84 16 25 C -0.12 1.08 5.39 30.58 0.16 1.24 16 26 C -0.03 -0.02 9.15 22.53 0.21 0.19 16 27 H 0.39 -1.87 8.70 -74.06 -0.64 -2.52 16 28 H 0.13 -0.55 7.96 -2.39 -0.02 -0.57 16 29 H -0.27 0.26 7.11 99.48 0.71 0.97 16 30 H -0.30 -1.15 7.11 99.48 0.71 -0.45 16 31 H 0.16 -1.09 4.86 -2.91 -0.01 -1.11 16 32 H 0.16 -1.75 6.41 -2.91 -0.02 -1.77 16 33 H 0.41 -4.57 6.64 -92.71 -0.62 -5.18 16 34 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 35 H 0.08 -0.56 8.14 -2.39 -0.02 -0.58 16 36 H 0.07 -0.40 8.14 -2.39 -0.02 -0.42 16 37 H 0.07 -0.61 7.52 -2.39 -0.02 -0.63 16 38 H 0.26 -2.73 8.06 -2.91 -0.02 -2.76 16 39 H 0.45 -5.03 8.28 -92.71 -0.77 -5.80 16 40 H 0.07 -0.49 8.14 -2.39 -0.02 -0.51 16 41 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 42 H 0.08 -0.83 8.14 -2.39 -0.02 -0.85 16 43 H 0.09 -1.04 8.14 -2.39 -0.02 -1.06 16 44 H 0.13 0.52 7.65 -2.91 -0.02 0.49 16 Total: 0.00 -28.23 381.84 -0.77 -29.00 By element: Atomic # 1 Polarization: -22.84 SS G_CDS: -0.90 Total: -23.74 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: 5.45 Total: 10.13 kcal Atomic # 7 Polarization: -1.02 SS G_CDS: -4.72 Total: -5.74 kcal Atomic # 8 Polarization: -6.01 SS G_CDS: -1.96 Total: -7.97 kcal Atomic # 14 Polarization: -3.15 SS G_CDS: 2.04 Total: -1.11 kcal Atomic # 35 Polarization: 0.11 SS G_CDS: -0.69 Total: -0.57 kcal Total: -28.23 -0.77 -29.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16624780_12335870.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.150 kcal (2) G-P(sol) polarization free energy of solvation -28.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds