Wall clock time and date at job start Sun Mar 7 2021 05:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86302 * 109.46738 * 2 1 4 4 C 1.50697 * 109.47206 * 119.99525 * 2 1 3 5 5 C 1.38399 * 119.82407 * 65.00051 * 4 2 1 6 6 C 1.37896 * 120.17138 * 179.97438 * 5 4 2 7 7 C 1.39838 * 119.82155 * 0.02562 * 6 5 4 8 8 C 1.47216 * 120.16385 * 179.97438 * 7 6 5 9 9 C 1.34808 * 119.99712 * 180.02562 * 8 7 6 10 10 C 1.46426 * 120.00131 * 180.02562 * 9 8 7 11 11 O 1.21698 * 119.99590 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00011 * 179.97438 * 10 9 8 13 13 C 1.46506 * 119.99969 * 179.97438 * 12 10 9 14 14 H 1.09005 * 109.46722 * 324.72200 * 13 12 10 15 15 C 1.52995 * 109.47182 * 84.72073 * 13 12 10 16 16 C 1.52996 * 109.46992 * 180.02562 * 15 13 12 17 17 C 1.53002 * 109.47258 * 299.99882 * 16 15 13 18 18 H 1.09008 * 109.46926 * 300.00538 * 17 16 15 19 19 C 1.50696 * 109.47602 * 180.02562 * 17 16 15 20 20 N 1.30518 * 126.35098 * 144.68843 * 19 17 16 21 21 N 1.28589 * 109.67535 * 179.82634 * 20 19 17 22 22 C 1.30525 * 109.67205 * 0.44744 * 21 20 19 23 23 N 1.35487 * 107.30427 * 359.73162 * 22 21 20 24 24 C 1.52998 * 109.46851 * 59.99809 * 17 16 15 25 25 C 1.52996 * 109.47346 * 300.00138 * 24 17 16 26 26 C 1.39832 * 119.66631 * 0.25026 * 7 6 5 27 27 C 1.37897 * 119.82160 * 359.47019 * 26 7 6 28 28 H 0.96696 * 114.00095 * 60.00050 * 1 2 3 29 29 H 1.08997 * 109.47209 * 240.00213 * 2 1 3 30 30 H 1.48503 * 110.00039 * 298.67780 * 3 2 1 31 31 H 1.48496 * 110.00356 * 60.00023 * 3 2 1 32 32 H 1.08001 * 119.92014 * 0.02562 * 5 4 2 33 33 H 1.07996 * 120.09042 * 180.02562 * 6 5 4 34 34 H 1.07998 * 119.99988 * 359.97438 * 8 7 6 35 35 H 1.08004 * 119.99844 * 359.97438 * 9 8 7 36 36 H 0.97005 * 120.00161 * 359.71927 * 12 10 9 37 37 H 1.09007 * 109.47360 * 299.99766 * 15 13 12 38 38 H 1.08997 * 109.47379 * 60.00113 * 15 13 12 39 39 H 1.09008 * 109.47401 * 180.02562 * 16 15 13 40 40 H 1.09001 * 109.47741 * 59.99690 * 16 15 13 41 41 H 1.07997 * 126.34469 * 179.73504 * 22 21 20 42 42 H 0.97011 * 126.97888 * 180.02562 * 23 22 21 43 43 H 1.09010 * 109.46944 * 180.02562 * 24 17 16 44 44 H 1.08997 * 109.47198 * 60.00475 * 24 17 16 45 45 H 1.08997 * 109.47248 * 300.00307 * 25 24 17 46 46 H 1.09005 * 109.46905 * 179.97438 * 25 24 17 47 47 H 1.07999 * 120.09133 * 179.74990 * 26 7 6 48 48 H 1.08000 * 119.91259 * 180.27953 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7103 1.2305 5 6 1.6824 -2.0617 1.3950 6 6 2.1392 -2.7189 2.5179 7 6 2.8552 -2.0161 3.4920 8 6 3.3459 -2.7101 4.6940 9 6 4.0353 -2.0291 5.6312 10 6 4.5239 -2.7194 6.8265 11 8 4.3071 -3.9078 6.9741 12 7 5.2135 -2.0387 7.7632 13 6 5.7019 -2.7292 8.9595 14 1 4.9815 -3.4905 9.2590 15 6 7.0463 -3.3919 8.6527 16 6 7.5560 -4.1136 9.9018 17 6 7.7325 -3.1040 11.0378 18 1 8.4529 -2.3426 10.7385 19 6 8.2351 -3.8146 12.2680 20 7 9.0697 -3.3371 13.1505 21 7 9.2753 -4.2123 14.0699 22 6 8.5885 -5.2916 13.8106 23 7 7.9088 -5.0700 12.6597 24 6 6.3880 -2.4413 11.3445 25 6 5.8784 -1.7196 10.0954 26 6 3.0977 -0.6495 3.3213 27 6 2.6393 -0.0078 2.1901 28 1 -0.3933 0.4417 -0.7650 29 1 1.7924 -0.5138 -0.8900 30 1 1.5878 2.4586 -1.2243 31 1 1.5614 2.4680 1.2084 32 1 1.1297 -2.6033 0.6416 33 1 1.9446 -3.7736 2.6447 34 1 3.1528 -3.7645 4.8254 35 1 4.2279 -0.9745 5.4999 36 1 5.3898 -1.0923 7.6436 37 1 6.9205 -4.1116 7.8437 38 1 7.7667 -2.6307 8.3531 39 1 8.5141 -4.5854 9.6834 40 1 6.8355 -4.8749 10.2010 41 1 8.5662 -6.1939 14.4036 42 1 7.3098 -5.6851 12.2081 43 1 6.5139 -1.7216 12.1536 44 1 5.6676 -3.2025 11.6437 45 1 6.5988 -0.9584 9.7962 46 1 4.9203 -1.2478 10.3139 47 1 3.6464 -0.0992 4.0712 48 1 2.8297 1.0466 2.0547 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16624780_12360594.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:33:25 Heat of formation + Delta-G solvation = 43.768161 kcal Electronic energy + Delta-G solvation = -29368.073182 eV Core-core repulsion = 25197.521148 eV Total energy + Delta-G solvation = -4170.552034 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 355.168 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -44.14691 -41.14256 -40.50657 -39.29046 -37.86916 -35.73298 -35.13911 -34.56584 -32.55370 -32.15318 -31.86846 -31.29686 -29.60364 -27.12670 -24.99569 -24.18854 -23.99553 -23.58751 -23.10171 -22.16243 -21.69571 -21.12639 -20.21901 -19.30050 -18.62230 -18.53211 -17.62676 -17.18965 -16.85947 -16.67052 -16.38555 -16.18576 -16.08687 -15.77357 -15.42010 -15.23643 -15.12591 -14.83699 -14.74317 -14.35183 -14.08040 -14.01152 -13.88298 -13.67713 -13.55721 -13.27578 -12.99342 -12.83001 -12.40461 -12.32598 -12.25369 -12.18850 -12.04707 -11.83692 -11.71917 -11.65870 -11.50707 -11.31695 -11.28476 -10.97513 -10.49798 -10.25107 -10.07729 -9.97212 -9.22380 -4.93070 -0.53199 0.40366 0.85931 0.90197 1.29385 1.59997 1.84935 1.89565 1.94128 2.19353 2.26538 2.78744 3.17288 3.37951 3.52649 3.62049 3.67408 3.76598 3.85355 3.87504 3.95102 3.98525 4.12874 4.19261 4.22179 4.23625 4.32825 4.33941 4.34804 4.40240 4.41065 4.44150 4.51432 4.56944 4.67850 4.80240 4.84969 4.97619 5.01535 5.01943 5.04662 5.09363 5.11035 5.16247 5.18052 5.27831 5.32450 5.40256 5.49041 5.54779 5.61454 5.90387 6.23454 6.56150 6.59120 7.26023 7.70641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.091 4.091 3 Si 0.767 3.233 4 C -0.076 4.076 5 C -0.108 4.108 6 C -0.103 4.103 7 C -0.082 4.082 8 C -0.022 4.022 9 C -0.208 4.208 10 C 0.543 3.457 11 O -0.590 6.590 12 N -0.709 5.709 13 C 0.145 3.855 14 H 0.070 0.930 15 C -0.121 4.121 16 C -0.107 4.107 17 C 0.004 3.996 18 H 0.109 0.891 19 C 0.191 3.809 20 N -0.342 5.342 21 N -0.354 5.354 22 C 0.169 3.831 23 N -0.569 5.569 24 C -0.102 4.102 25 C -0.115 4.115 26 C -0.095 4.095 27 C -0.126 4.126 28 H 0.395 0.605 29 H 0.095 0.905 30 H -0.289 1.289 31 H -0.295 1.295 32 H 0.131 0.869 33 H 0.139 0.861 34 H 0.123 0.877 35 H 0.163 0.837 36 H 0.418 0.582 37 H 0.055 0.945 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.261 0.739 42 H 0.445 0.555 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.091 0.909 46 H 0.082 0.918 47 H 0.159 0.841 48 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.478 1.236 -4.929 5.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.369 6.369 2 C -0.199 4.199 3 Si 0.672 3.328 4 C -0.076 4.076 5 C -0.126 4.126 6 C -0.121 4.121 7 C -0.082 4.082 8 C -0.042 4.042 9 C -0.229 4.229 10 C 0.334 3.666 11 O -0.472 6.472 12 N -0.359 5.359 13 C 0.040 3.960 14 H 0.088 0.912 15 C -0.160 4.160 16 C -0.146 4.146 17 C -0.017 4.017 18 H 0.127 0.873 19 C -0.080 4.080 20 N -0.182 5.182 21 N -0.193 5.193 22 C -0.122 4.122 23 N -0.184 5.184 24 C -0.141 4.141 25 C -0.153 4.153 26 C -0.112 4.112 27 C -0.143 4.143 28 H 0.245 0.755 29 H 0.113 0.887 30 H -0.216 1.216 31 H -0.223 1.223 32 H 0.149 0.851 33 H 0.157 0.843 34 H 0.141 0.859 35 H 0.180 0.820 36 H 0.255 0.745 37 H 0.074 0.926 38 H 0.100 0.900 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.277 0.723 42 H 0.288 0.712 43 H 0.091 0.909 44 H 0.087 0.913 45 H 0.109 0.891 46 H 0.100 0.900 47 H 0.176 0.824 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.326 1.990 -3.444 3.991 hybrid contribution -2.299 -1.283 -1.274 2.925 sum -1.973 0.707 -4.718 5.163 Atomic orbital electron populations 1.86547 1.18559 1.80742 1.51073 1.25096 0.84068 1.12115 0.98654 0.94116 0.90245 0.71995 0.76407 1.19684 0.97928 0.94305 0.95661 1.21103 0.99140 0.94204 0.98198 1.21622 0.96464 1.00769 0.93253 1.19138 1.00095 0.94195 0.94744 1.22342 0.91489 0.99574 0.90760 1.23047 1.03419 1.02129 0.94271 1.18683 0.77542 0.86347 0.84063 1.90809 1.59766 1.17332 1.79342 1.45845 1.55306 1.14076 1.20688 1.20997 0.95243 0.95151 0.84596 0.91169 1.21817 0.96742 1.00242 0.97202 1.21535 1.02069 0.97374 0.93625 1.19819 0.98450 0.96936 0.86529 0.87286 1.25215 0.97759 0.85010 0.99998 1.74181 1.16705 1.25102 1.02174 1.74190 1.23175 1.00586 1.21362 1.27290 0.93780 1.02113 0.88981 1.44100 1.38072 1.14741 1.21448 1.21477 0.94345 1.00110 0.98188 1.21731 1.03171 0.97643 0.92795 1.21636 0.98617 0.93283 0.97691 1.21171 0.98918 1.00370 0.93828 0.75456 0.88727 1.21637 1.22293 0.85147 0.84340 0.85887 0.81999 0.74463 0.92622 0.90019 0.90889 0.90929 0.72315 0.71166 0.90930 0.91331 0.89082 0.89959 0.82353 0.83773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.83 12.81 -148.98 -1.91 -2.74 16 2 C -0.09 0.16 2.79 71.23 0.20 0.35 16 3 Si 0.77 -2.72 29.83 68.60 2.05 -0.68 16 4 C -0.08 -0.06 5.39 -19.79 -0.11 -0.17 16 5 C -0.11 -0.17 9.66 22.23 0.21 0.05 16 6 C -0.10 -0.09 9.80 22.58 0.22 0.13 16 7 C -0.08 0.00 5.87 -20.15 -0.12 -0.12 16 8 C -0.02 -0.01 9.46 23.84 0.23 0.22 16 9 C -0.21 0.54 9.41 23.62 0.22 0.76 16 10 C 0.54 0.92 7.70 86.38 0.67 1.59 16 11 O -0.59 -6.30 15.90 -4.34 -0.07 -6.37 16 12 N -0.71 3.43 5.07 -446.76 -2.27 1.16 16 13 C 0.14 -0.65 2.45 44.99 0.11 -0.54 16 14 H 0.07 0.01 7.59 -2.38 -0.02 -0.01 16 15 C -0.12 0.54 5.49 30.59 0.17 0.71 16 16 C -0.11 0.62 4.97 30.59 0.15 0.77 16 17 C 0.00 -0.01 2.66 -11.54 -0.03 -0.04 16 18 H 0.11 -0.38 8.14 -2.38 -0.02 -0.40 16 19 C 0.19 0.34 6.99 137.98 0.96 1.31 16 20 N -0.34 -3.70 12.21 -50.16 -0.61 -4.31 16 21 N -0.35 -3.71 12.21 -59.99 -0.73 -4.44 16 22 C 0.17 -0.06 13.19 180.11 2.38 2.31 16 23 N -0.57 2.05 5.96 -189.87 -1.13 0.92 16 24 C -0.10 0.58 5.19 30.59 0.16 0.74 16 25 C -0.12 0.93 5.39 30.59 0.16 1.10 16 26 C -0.09 0.26 9.41 22.57 0.21 0.47 16 27 C -0.13 0.19 8.65 22.23 0.19 0.38 16 28 H 0.39 -2.54 8.74 -74.06 -0.65 -3.19 16 29 H 0.09 -0.51 7.96 -2.39 -0.02 -0.53 16 30 H -0.29 -0.30 7.11 99.48 0.71 0.41 16 31 H -0.30 -0.93 7.04 99.48 0.70 -0.23 16 32 H 0.13 0.02 8.06 -2.91 -0.02 -0.01 16 33 H 0.14 -0.25 8.06 -2.91 -0.02 -0.27 16 34 H 0.12 0.34 7.52 -2.91 -0.02 0.32 16 35 H 0.16 -1.58 6.07 -2.91 -0.02 -1.60 16 36 H 0.42 -4.66 8.58 -92.70 -0.80 -5.46 16 37 H 0.05 0.02 8.14 -2.38 -0.02 0.00 16 38 H 0.08 -0.51 8.14 -2.39 -0.02 -0.53 16 39 H 0.07 -0.36 8.14 -2.38 -0.02 -0.38 16 40 H 0.07 -0.52 7.52 -2.39 -0.02 -0.54 16 41 H 0.26 -2.67 8.06 -2.91 -0.02 -2.69 16 42 H 0.45 -4.79 8.29 -92.70 -0.77 -5.56 16 43 H 0.07 -0.25 8.14 -2.38 -0.02 -0.27 16 44 H 0.07 -0.39 8.14 -2.39 -0.02 -0.41 16 45 H 0.09 -0.95 8.14 -2.39 -0.02 -0.97 16 46 H 0.08 -0.68 8.14 -2.38 -0.02 -0.70 16 47 H 0.16 -1.42 6.17 -2.91 -0.02 -1.44 16 48 H 0.15 -0.75 4.84 -2.91 -0.01 -0.77 16 Total: 0.00 -31.82 395.20 0.16 -31.66 By element: Atomic # 1 Polarization: -24.06 SS G_CDS: -1.16 Total: -25.22 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: 5.99 Total: 10.03 kcal Atomic # 7 Polarization: -1.93 SS G_CDS: -4.74 Total: -6.68 kcal Atomic # 8 Polarization: -7.13 SS G_CDS: -1.98 Total: -9.11 kcal Atomic # 14 Polarization: -2.72 SS G_CDS: 2.05 Total: -0.68 kcal Total: -31.82 0.16 -31.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16624780_12360594.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.427 kcal (2) G-P(sol) polarization free energy of solvation -31.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds