Wall clock time and date at job start Sun Mar 7 2021 05:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86305 * 109.46883 * 2 1 4 4 C 1.50705 * 109.46857 * 240.00481 * 2 1 3 5 5 C 1.35079 * 126.07520 * 105.23217 * 4 2 1 6 6 N 1.35040 * 107.97637 * 180.12212 * 5 4 2 7 7 C 1.46501 * 125.93268 * 179.83599 * 6 5 4 8 8 C 1.50696 * 109.47112 * 124.71395 * 7 6 5 9 9 O 1.21271 * 120.00288 * 0.02562 * 8 7 6 10 10 N 1.34785 * 119.99563 * 179.97438 * 8 7 6 11 11 C 1.46502 * 119.99528 * 180.02562 * 10 8 7 12 12 H 1.08995 * 109.47442 * 35.00082 * 11 10 8 13 13 C 1.53000 * 109.46736 * 155.00256 * 11 10 8 14 14 C 1.53005 * 109.47021 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.46952 * 300.00240 * 14 13 11 16 16 H 1.09005 * 109.46875 * 299.99779 * 15 14 13 17 17 C 1.50704 * 109.46906 * 179.97438 * 15 14 13 18 18 N 1.30515 * 126.34486 * 144.68684 * 17 15 14 19 19 N 1.28593 * 109.67238 * 179.82643 * 18 17 15 20 20 C 1.30515 * 109.67300 * 0.44490 * 19 18 17 21 21 N 1.35491 * 107.30822 * 359.73516 * 20 19 18 22 22 C 1.53000 * 109.47453 * 60.00025 * 15 14 13 23 23 C 1.52997 * 109.46799 * 299.99951 * 22 15 14 24 24 N 1.40070 * 108.14022 * 359.57075 * 6 5 4 25 25 C 1.31621 * 108.10848 * 0.26297 * 24 6 5 26 26 C 1.48419 * 126.04204 * 179.97438 * 25 24 6 27 27 C 1.39316 * 120.12068 * 136.98071 * 26 25 24 28 28 C 1.38033 * 119.88174 * 179.72274 * 27 26 25 29 29 C 1.38318 * 120.11543 * 0.55545 * 28 27 26 30 30 C 1.38327 * 120.24228 * 359.71886 * 29 28 27 31 31 C 1.38023 * 120.11701 * 0.02562 * 30 29 28 32 32 H 0.96695 * 114.00035 * 60.00084 * 1 2 3 33 33 H 1.08990 * 109.47386 * 120.00152 * 2 1 3 34 34 H 1.48502 * 109.99965 * 60.00102 * 3 2 1 35 35 H 1.48499 * 109.99836 * 181.32377 * 3 2 1 36 36 H 1.07995 * 126.01638 * 359.97438 * 5 4 2 37 37 H 1.09000 * 109.46898 * 4.70968 * 7 6 5 38 38 H 1.09000 * 109.47119 * 244.71542 * 7 6 5 39 39 H 0.96991 * 120.00162 * 0.02562 * 10 8 7 40 40 H 1.08995 * 109.47297 * 59.99737 * 13 11 10 41 41 H 1.08997 * 109.47084 * 299.99468 * 13 11 10 42 42 H 1.08993 * 109.47075 * 179.97438 * 14 13 11 43 43 H 1.09005 * 109.47150 * 59.99850 * 14 13 11 44 44 H 1.08004 * 126.34858 * 179.73331 * 20 19 18 45 45 H 0.96998 * 126.98471 * 179.97438 * 21 20 19 46 46 H 1.08994 * 109.47054 * 59.99575 * 22 15 14 47 47 H 1.08997 * 109.47084 * 180.02562 * 22 15 14 48 48 H 1.09001 * 109.47147 * 180.02562 * 23 22 15 49 49 H 1.09005 * 109.47246 * 300.00073 * 23 22 15 50 50 H 1.08009 * 120.06245 * 359.97438 * 27 26 25 51 51 H 1.07995 * 119.94182 * 180.27207 * 28 27 26 52 52 H 1.07993 * 119.88300 * 179.70027 * 29 28 27 53 53 H 1.07994 * 119.94139 * 180.02562 * 30 29 28 54 54 H 1.07997 * 120.05783 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2306 5 6 2.4669 -0.1251 -2.3239 6 7 2.7883 -1.0989 -3.2026 7 6 3.3926 -0.9008 -4.5224 8 6 4.6596 -1.7106 -4.6213 9 8 5.0219 -2.3870 -3.6823 10 7 5.3897 -1.6839 -5.7541 11 6 6.6211 -2.4716 -5.8505 12 1 6.5001 -3.4040 -5.2991 13 6 6.9140 -2.7822 -7.3197 14 6 8.2005 -3.6043 -7.4205 15 6 9.3632 -2.8070 -6.8261 16 1 9.4837 -1.8745 -7.3776 17 6 10.6301 -3.6171 -6.9248 18 7 11.8295 -3.1531 -7.1478 19 7 12.6729 -4.1236 -7.1644 20 6 12.0487 -5.2518 -6.9623 21 7 10.7344 -4.9626 -6.8045 22 6 9.0702 -2.4965 -5.3569 23 6 7.7839 -1.6743 -5.2561 24 7 2.4491 -2.3317 -2.6307 25 6 1.9323 -2.1029 -1.4420 26 6 1.4373 -3.1306 -0.4924 27 6 1.7390 -3.0321 0.8641 28 6 1.2712 -3.9875 1.7437 29 6 0.5139 -5.0475 1.2788 30 6 0.2162 -5.1532 -0.0680 31 6 0.6745 -4.2006 -0.9554 32 1 -0.3933 0.4417 -0.7650 33 1 1.7924 -0.5138 0.8899 34 1 1.5615 2.4679 1.2085 35 1 3.5346 1.7704 -0.0322 36 1 2.6104 0.9351 -2.4707 37 1 3.6245 0.1552 -4.6609 38 1 2.6939 -1.2235 -5.2941 39 1 5.0997 -1.1432 -6.5053 40 1 7.0350 -1.8498 -7.8711 41 1 6.0855 -3.3499 -7.7432 42 1 8.4089 -3.8260 -8.4671 43 1 8.0799 -4.5368 -6.8691 44 1 12.4966 -6.2339 -6.9272 45 1 10.0143 -5.5912 -6.6393 46 1 8.9496 -3.4289 -4.8055 47 1 9.8984 -1.9281 -4.9336 48 1 7.5754 -1.4527 -4.2094 49 1 7.9044 -0.7418 -5.8076 50 1 2.3343 -2.2075 1.2275 51 1 1.5008 -3.9098 2.7961 52 1 0.1540 -5.7955 1.9696 53 1 -0.3758 -5.9826 -0.4256 54 1 0.4418 -4.2843 -2.0067 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16624780_12622748.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:33:42 Heat of formation + Delta-G solvation = 112.475726 kcal Electronic energy + Delta-G solvation = -37961.206499 eV Core-core repulsion = 33095.254509 eV Total energy + Delta-G solvation = -4865.951991 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 409.190 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -44.18468 -42.48153 -41.06724 -39.85649 -39.27615 -37.66093 -35.76910 -34.80319 -34.59629 -32.67962 -32.25706 -31.92377 -31.87890 -31.41165 -29.89522 -28.37054 -26.05673 -24.90966 -24.14968 -23.90059 -23.50723 -23.30684 -22.21548 -21.71167 -21.51888 -21.13331 -20.77345 -19.34454 -18.76693 -18.33019 -17.74079 -17.47381 -17.02727 -16.92875 -16.49830 -16.42631 -16.33411 -16.17453 -15.94805 -15.66588 -15.45626 -15.39130 -15.19729 -14.98019 -14.86651 -14.39153 -14.36514 -14.21362 -14.06756 -13.96171 -13.77734 -13.62205 -13.34051 -13.20638 -12.87010 -12.49283 -12.48404 -12.41206 -12.33035 -12.23680 -12.15855 -11.87724 -11.87164 -11.73184 -11.69330 -11.49941 -11.36965 -11.20190 -10.61073 -10.29252 -10.22758 -10.11867 -9.92008 -9.77056 -9.31687 -5.02740 0.08822 0.42082 0.81909 0.82238 1.31289 1.41307 1.51863 1.63009 1.75456 1.81252 1.85896 2.02935 2.10866 2.85039 3.12925 3.35352 3.51451 3.58983 3.64061 3.64634 3.74741 3.86709 3.93979 3.95010 3.97928 4.03336 4.08287 4.17111 4.17478 4.18846 4.22333 4.26969 4.31050 4.36934 4.39602 4.43281 4.47629 4.50368 4.53086 4.63490 4.76765 4.77788 4.83140 4.95431 4.97034 4.97649 5.00249 5.05578 5.06170 5.12453 5.23066 5.27143 5.27462 5.46734 5.52078 5.53195 5.58430 5.94132 5.99570 6.20050 6.50810 6.60063 6.90723 7.21078 7.66989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.043 4.043 3 Si 0.801 3.199 4 C -0.270 4.270 5 C 0.079 3.921 6 N -0.359 5.359 7 C 0.108 3.892 8 C 0.494 3.506 9 O -0.567 6.567 10 N -0.708 5.708 11 C 0.149 3.851 12 H 0.061 0.939 13 C -0.114 4.114 14 C -0.110 4.110 15 C 0.005 3.995 16 H 0.112 0.888 17 C 0.190 3.810 18 N -0.343 5.343 19 N -0.354 5.354 20 C 0.169 3.831 21 N -0.569 5.569 22 C -0.102 4.102 23 C -0.119 4.119 24 N -0.291 5.291 25 C 0.106 3.894 26 C -0.025 4.025 27 C -0.110 4.110 28 C -0.126 4.126 29 C -0.119 4.119 30 C -0.124 4.124 31 C -0.109 4.109 32 H 0.391 0.609 33 H 0.091 0.909 34 H -0.301 1.301 35 H -0.286 1.286 36 H 0.228 0.772 37 H 0.181 0.819 38 H 0.145 0.855 39 H 0.422 0.578 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.071 0.929 44 H 0.261 0.739 45 H 0.445 0.555 46 H 0.058 0.942 47 H 0.060 0.940 48 H 0.046 0.954 49 H 0.088 0.912 50 H 0.121 0.879 51 H 0.144 0.856 52 H 0.147 0.853 53 H 0.145 0.855 54 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.933 2.555 -7.409 9.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.365 6.365 2 C -0.153 4.153 3 Si 0.706 3.294 4 C -0.282 4.282 5 C -0.066 4.066 6 N -0.140 5.140 7 C -0.015 4.015 8 C 0.280 3.720 9 O -0.444 6.444 10 N -0.361 5.361 11 C 0.044 3.956 12 H 0.080 0.920 13 C -0.152 4.152 14 C -0.149 4.149 15 C -0.016 4.016 16 H 0.131 0.869 17 C -0.081 4.081 18 N -0.183 5.183 19 N -0.193 5.193 20 C -0.122 4.122 21 N -0.184 5.184 22 C -0.142 4.142 23 C -0.158 4.158 24 N -0.113 5.113 25 C -0.060 4.060 26 C -0.027 4.027 27 C -0.130 4.130 28 C -0.143 4.143 29 C -0.137 4.137 30 C -0.142 4.142 31 C -0.128 4.128 32 H 0.241 0.759 33 H 0.109 0.891 34 H -0.229 1.229 35 H -0.213 1.213 36 H 0.244 0.756 37 H 0.198 0.802 38 H 0.162 0.838 39 H 0.261 0.739 40 H 0.114 0.886 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.090 0.910 44 H 0.277 0.723 45 H 0.288 0.712 46 H 0.077 0.923 47 H 0.079 0.921 48 H 0.064 0.936 49 H 0.106 0.894 50 H 0.139 0.861 51 H 0.161 0.839 52 H 0.165 0.835 53 H 0.162 0.838 54 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.436 2.576 -7.143 8.335 hybrid contribution -1.015 -1.439 1.153 2.105 sum -4.451 1.137 -5.990 7.549 Atomic orbital electron populations 1.86479 1.17707 1.82306 1.50002 1.24719 0.84849 1.10611 0.95102 0.94114 0.76848 0.73223 0.85198 1.20639 1.14655 0.92444 1.00462 1.22876 0.97904 0.96949 0.88871 1.48169 1.47379 1.03511 1.14952 1.22055 0.92822 1.04918 0.81729 1.21129 0.85789 0.82251 0.82859 1.90827 1.71554 1.42774 1.39284 1.45807 1.24550 1.49281 1.16506 1.20925 0.83026 0.94033 0.97642 0.92043 1.21718 0.97580 1.02276 0.93589 1.21580 0.92668 0.98497 1.02126 1.19824 0.85986 0.97859 0.97929 0.86949 1.25242 0.98049 0.82855 1.01911 1.74181 0.98578 1.24928 1.20586 1.74187 1.27340 0.97168 1.20600 1.27298 0.81098 1.02509 1.01270 1.44091 1.11044 1.08700 1.54528 1.21449 0.97742 1.00513 0.94466 1.21812 0.93395 0.99618 1.00937 1.77689 1.19467 1.04174 1.09946 1.20805 0.98607 0.93647 0.92892 1.17981 0.98930 0.93804 0.91942 1.21239 1.00028 0.99521 0.92183 1.21374 0.98045 0.94430 1.00499 1.21566 0.97724 0.98370 0.96069 1.21391 1.00074 0.99159 0.93595 1.21281 0.97637 0.93857 1.00051 0.75913 0.89133 1.22877 1.21335 0.75572 0.80155 0.83774 0.73920 0.88573 0.89422 0.89626 0.91036 0.72304 0.71156 0.92294 0.92147 0.93559 0.89384 0.86067 0.83866 0.83509 0.83751 0.86201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.72 12.88 -148.98 -1.92 -3.64 16 2 C -0.04 -0.10 2.52 71.24 0.18 0.08 16 3 Si 0.80 -2.41 30.74 68.60 2.11 -0.31 16 4 C -0.27 -1.08 5.35 -19.95 -0.11 -1.19 16 5 C 0.08 -0.19 9.96 83.47 0.83 0.64 16 6 N -0.36 -0.39 3.40 -351.92 -1.20 -1.59 16 7 C 0.11 -0.97 6.99 85.63 0.60 -0.37 16 8 C 0.49 -0.79 7.82 87.65 0.69 -0.10 16 9 O -0.57 -6.55 15.36 -3.00 -0.05 -6.60 16 10 N -0.71 6.32 5.08 -442.54 -2.25 4.07 16 11 C 0.15 -0.91 2.46 44.99 0.11 -0.80 16 12 H 0.06 0.02 7.58 -2.39 -0.02 0.01 16 13 C -0.11 1.32 5.39 30.60 0.16 1.48 16 14 C -0.11 1.06 4.97 30.60 0.15 1.22 16 15 C 0.00 -0.02 2.66 -11.54 -0.03 -0.05 16 16 H 0.11 -0.53 8.14 -2.38 -0.02 -0.55 16 17 C 0.19 0.33 6.99 137.98 0.96 1.29 16 18 N -0.34 -3.79 12.21 -50.15 -0.61 -4.40 16 19 N -0.35 -3.78 12.21 -59.99 -0.73 -4.51 16 20 C 0.17 -0.04 13.19 180.11 2.37 2.33 16 21 N -0.57 2.11 5.96 -189.86 -1.13 0.98 16 22 C -0.10 0.26 5.18 30.59 0.16 0.42 16 23 C -0.12 0.48 5.49 30.59 0.17 0.65 16 24 N -0.29 -3.18 11.67 -48.16 -0.56 -3.74 16 25 C 0.11 1.12 6.67 42.53 0.28 1.41 16 26 C -0.02 -0.28 5.74 -20.04 -0.12 -0.40 16 27 C -0.11 -1.05 8.88 22.48 0.20 -0.85 16 28 C -0.13 -0.77 10.04 22.24 0.22 -0.55 16 29 C -0.12 -0.56 10.04 22.31 0.22 -0.34 16 30 C -0.12 -0.74 10.03 22.24 0.22 -0.51 16 31 C -0.11 -1.06 9.78 22.48 0.22 -0.84 16 32 H 0.39 -2.32 8.70 -74.06 -0.64 -2.97 16 33 H 0.09 0.52 5.56 -2.39 -0.01 0.50 16 34 H -0.30 -1.46 7.11 99.48 0.71 -0.75 16 35 H -0.29 -0.58 7.11 99.48 0.71 0.12 16 36 H 0.23 -3.08 6.40 -2.91 -0.02 -3.10 16 37 H 0.18 -3.55 8.07 -2.39 -0.02 -3.57 16 38 H 0.14 -2.01 8.14 -2.39 -0.02 -2.02 16 39 H 0.42 -7.24 8.60 -92.71 -0.80 -8.04 16 40 H 0.10 -1.40 8.14 -2.39 -0.02 -1.42 16 41 H 0.09 -1.09 8.14 -2.39 -0.02 -1.11 16 42 H 0.09 -0.87 8.14 -2.39 -0.02 -0.89 16 43 H 0.07 -0.75 7.52 -2.38 -0.02 -0.77 16 44 H 0.26 -2.64 8.06 -2.91 -0.02 -2.66 16 45 H 0.45 -4.95 8.28 -92.71 -0.77 -5.72 16 46 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 47 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 48 H 0.05 0.10 8.14 -2.39 -0.02 0.08 16 49 H 0.09 -0.63 8.14 -2.38 -0.02 -0.65 16 50 H 0.12 0.97 6.23 -2.91 -0.02 0.95 16 51 H 0.14 0.21 8.06 -2.91 -0.02 0.18 16 52 H 0.15 -0.09 8.06 -2.91 -0.02 -0.12 16 53 H 0.14 0.13 8.06 -2.91 -0.02 0.11 16 54 H 0.12 1.08 8.06 -2.91 -0.02 1.05 16 Total: 0.00 -47.56 444.37 -0.02 -47.58 By element: Atomic # 1 Polarization: -30.17 SS G_CDS: -1.19 Total: -31.37 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: 7.51 Total: 3.51 kcal Atomic # 7 Polarization: -2.70 SS G_CDS: -6.48 Total: -9.19 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: -1.97 Total: -10.24 kcal Atomic # 14 Polarization: -2.41 SS G_CDS: 2.11 Total: -0.31 kcal Total: -47.56 -0.02 -47.58 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16624780_12622748.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.060 kcal (2) G-P(sol) polarization free energy of solvation -47.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds