Wall clock time and date at job start Sun Mar 7 2021 05:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86299 * 109.47082 * 2 1 4 4 C 1.50705 * 109.46792 * 119.99975 * 2 1 3 5 5 C 1.34830 * 125.65171 * 65.00443 * 4 2 1 6 6 C 1.40801 * 107.04809 * 180.02562 * 5 4 2 7 7 C 1.36101 * 106.73114 * 359.97438 * 6 5 4 8 8 C 1.47573 * 125.94310 * 179.97438 * 7 6 5 9 9 C 1.39927 * 119.95423 * 0.02562 * 8 7 6 10 10 C 1.36422 * 120.27764 * 179.97438 * 9 8 7 11 11 C 1.39879 * 120.18621 * 0.02562 * 10 9 8 12 12 C 1.47296 * 120.04559 * 179.97438 * 11 10 9 13 13 O 1.21627 * 119.99695 * 179.97438 * 12 11 10 14 14 N 1.34781 * 119.99991 * 0.02562 * 12 11 10 15 15 C 1.46496 * 119.99775 * 180.02562 * 14 12 11 16 16 H 1.08996 * 109.47565 * 34.99894 * 15 14 12 17 17 C 1.52997 * 109.46953 * 154.99854 * 15 14 12 18 18 C 1.53006 * 109.47127 * 179.97438 * 17 15 14 19 19 C 1.52999 * 109.46626 * 299.99539 * 18 17 15 20 20 H 1.08993 * 109.47839 * 299.99931 * 19 18 17 21 21 C 1.50706 * 109.46957 * 180.02562 * 19 18 17 22 22 N 1.30517 * 126.34760 * 94.68825 * 21 19 18 23 23 N 1.28599 * 109.67302 * 179.82764 * 22 21 19 24 24 C 1.30518 * 109.67143 * 0.44894 * 23 22 21 25 25 N 1.35490 * 107.30800 * 359.72996 * 24 23 22 26 26 C 1.52997 * 109.46991 * 60.00378 * 19 18 17 27 27 C 1.52996 * 109.47131 * 299.99311 * 26 19 18 28 28 C 1.40407 * 119.90641 * 0.25638 * 11 10 9 29 29 O 1.35681 * 120.13588 * 179.74968 * 28 11 10 30 30 C 1.38271 * 119.72386 * 359.44381 * 28 11 10 31 31 O 1.34230 * 125.65011 * 245.34840 * 4 2 1 32 32 H 0.96698 * 114.00201 * 300.00556 * 1 2 3 33 33 H 1.09000 * 109.47116 * 239.99847 * 2 1 3 34 34 H 1.48504 * 109.99973 * 299.99885 * 3 2 1 35 35 H 1.48500 * 110.00226 * 61.32108 * 3 2 1 36 36 H 1.07999 * 126.47719 * 0.06160 * 5 4 2 37 37 H 1.08003 * 126.63161 * 179.97438 * 6 5 4 38 38 H 1.07997 * 119.86067 * 359.97438 * 9 8 7 39 39 H 1.07995 * 119.90743 * 180.02562 * 10 9 8 40 40 H 0.97001 * 119.99650 * 359.97438 * 14 12 11 41 41 H 1.09001 * 109.47502 * 60.00124 * 17 15 14 42 42 H 1.09001 * 109.47289 * 299.99920 * 17 15 14 43 43 H 1.08993 * 109.46955 * 60.00011 * 18 17 15 44 44 H 1.09000 * 109.47050 * 179.97438 * 18 17 15 45 45 H 1.08007 * 126.34732 * 179.73203 * 24 23 22 46 46 H 0.97000 * 126.97957 * 180.02562 * 25 24 23 47 47 H 1.09001 * 109.47289 * 179.97438 * 26 19 18 48 48 H 1.09000 * 109.47611 * 59.99933 * 26 19 18 49 49 H 1.08996 * 109.47452 * 300.00000 * 27 26 19 50 50 H 1.09000 * 109.47054 * 180.02562 * 27 26 19 51 51 H 0.96700 * 114.00026 * 89.99122 * 29 28 11 52 52 H 1.08004 * 120.09066 * 180.27396 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.7567 -2.0180 1.5093 6 6 2.3799 -2.2627 2.7480 7 6 2.9072 -1.0783 3.1621 8 6 3.6554 -0.8538 4.4141 9 6 3.8755 -1.9170 5.2968 10 6 4.5667 -1.7170 6.4558 11 6 5.0600 -0.4464 6.7701 12 6 5.8055 -0.2338 8.0226 13 8 6.2344 0.8713 8.2949 14 7 6.0131 -1.2641 8.8665 15 6 6.7539 -1.0524 10.1124 16 1 6.5298 -0.0604 10.5045 17 6 6.3413 -2.1110 11.1371 18 6 7.1156 -1.8904 12.4383 19 6 8.6165 -2.0039 12.1640 20 1 8.8403 -2.9959 11.7718 21 6 9.3792 -1.7872 13.4456 22 7 9.8032 -2.7151 14.2597 23 7 10.4184 -2.1734 15.2507 24 6 10.4064 -0.8750 15.1186 25 7 9.7466 -0.5928 13.9693 26 6 9.0291 -0.9453 11.1392 27 6 8.2549 -1.1659 9.8382 28 6 4.8385 0.6273 5.8929 29 8 5.3106 1.8628 6.1957 30 6 4.1429 0.4190 4.7163 31 8 2.6209 -0.1449 2.2337 32 1 -0.3933 0.4418 0.7650 33 1 1.7923 -0.5139 -0.8900 34 1 1.5615 2.4679 -1.2085 35 1 1.5879 2.4586 1.2242 36 1 1.2376 -2.7411 0.8978 37 1 2.4298 -3.2076 3.2687 38 1 3.4966 -2.9001 5.0595 39 1 4.7335 -2.5420 7.1325 40 1 5.6712 -2.1454 8.6491 41 1 6.5655 -3.1031 10.7452 42 1 5.2720 -2.0305 11.3322 43 1 6.8918 -0.8984 12.8305 44 1 6.8213 -2.6443 13.1685 45 1 10.8418 -0.1583 15.7993 46 1 9.5729 0.2858 13.5969 47 1 10.0985 -1.0259 10.9441 48 1 8.8055 0.0468 11.5314 49 1 8.4786 -2.1579 9.4459 50 1 8.5492 -0.4120 9.1080 51 1 6.2029 2.0348 5.8650 52 1 3.9729 1.2397 4.0351 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16624780_12807986.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:33:53 Heat of formation + Delta-G solvation = 9.331861 kcal Electronic energy + Delta-G solvation = -37519.004669 eV Core-core repulsion = 32453.142700 eV Total energy + Delta-G solvation = -5065.861969 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 411.167 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -44.14031 -43.74141 -41.64350 -40.28169 -38.96292 -38.20243 -37.86096 -35.70546 -34.60907 -34.24435 -33.57704 -32.25107 -31.86040 -31.29385 -30.55845 -29.42650 -27.03361 -25.04203 -24.30370 -24.04367 -23.88880 -23.26990 -22.46125 -22.14324 -21.76394 -21.29648 -20.95856 -19.72451 -19.29763 -18.78233 -18.56895 -17.69920 -17.55484 -17.46997 -16.85716 -16.63905 -16.53896 -16.33164 -16.27027 -15.99802 -15.82979 -15.79872 -15.39277 -15.08784 -14.91218 -14.67933 -14.44376 -14.32482 -14.01975 -13.97706 -13.79580 -13.73329 -13.59161 -13.45033 -13.26362 -12.96585 -12.82262 -12.70062 -12.40057 -12.26529 -12.19910 -12.18015 -11.86953 -11.83019 -11.65065 -11.49848 -11.28283 -11.12748 -10.86129 -10.84405 -10.61925 -10.24539 -10.07472 -9.93991 -9.00883 -5.00242 -0.77803 0.16049 0.65036 0.86569 1.12182 1.43654 1.45375 1.69538 1.85318 1.87844 1.90070 1.95105 2.07073 2.66473 3.02946 3.17714 3.21013 3.36962 3.53475 3.62392 3.67467 3.72149 3.87067 3.88110 3.98471 3.99844 4.02247 4.14566 4.21317 4.25102 4.33636 4.34690 4.38000 4.41860 4.44149 4.44903 4.51549 4.65263 4.66506 4.71958 4.79852 4.81817 4.90119 5.01915 5.02644 5.05428 5.08239 5.09987 5.12028 5.17686 5.22831 5.28547 5.32377 5.43643 5.50212 5.55836 5.96174 6.23967 6.30496 6.51955 6.71589 7.20880 7.71145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.535 6.535 2 C -0.033 4.033 3 Si 0.764 3.236 4 C -0.052 4.052 5 C -0.181 4.181 6 C -0.172 4.172 7 C 0.005 3.995 8 C 0.024 3.976 9 C -0.110 4.110 10 C -0.051 4.051 11 C -0.179 4.179 12 C 0.558 3.442 13 O -0.561 6.561 14 N -0.709 5.709 15 C 0.147 3.853 16 H 0.070 0.930 17 C -0.116 4.116 18 C -0.102 4.102 19 C 0.004 3.996 20 H 0.110 0.890 21 C 0.191 3.809 22 N -0.342 5.342 23 N -0.355 5.355 24 C 0.168 3.832 25 N -0.570 5.570 26 C -0.107 4.107 27 C -0.121 4.121 28 C 0.160 3.840 29 O -0.495 6.495 30 C -0.154 4.154 31 O -0.177 6.177 32 H 0.389 0.611 33 H 0.158 0.842 34 H -0.281 1.281 35 H -0.298 1.298 36 H 0.167 0.833 37 H 0.182 0.818 38 H 0.169 0.831 39 H 0.174 0.826 40 H 0.414 0.586 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.067 0.933 44 H 0.072 0.928 45 H 0.261 0.739 46 H 0.445 0.555 47 H 0.073 0.927 48 H 0.071 0.929 49 H 0.083 0.917 50 H 0.057 0.943 51 H 0.409 0.591 52 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.235 -2.172 -3.468 4.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.343 6.343 2 C -0.143 4.143 3 Si 0.668 3.332 4 C -0.102 4.102 5 C -0.200 4.200 6 C -0.191 4.191 7 C -0.044 4.044 8 C 0.023 3.977 9 C -0.128 4.128 10 C -0.069 4.069 11 C -0.182 4.182 12 C 0.346 3.654 13 O -0.441 6.441 14 N -0.362 5.362 15 C 0.042 3.958 16 H 0.089 0.911 17 C -0.154 4.154 18 C -0.141 4.141 19 C -0.017 4.017 20 H 0.128 0.872 21 C -0.080 4.080 22 N -0.182 5.182 23 N -0.193 5.193 24 C -0.122 4.122 25 N -0.184 5.184 26 C -0.146 4.146 27 C -0.159 4.159 28 C 0.113 3.887 29 O -0.309 6.309 30 C -0.173 4.173 31 O -0.075 6.075 32 H 0.239 0.761 33 H 0.175 0.825 34 H -0.207 1.207 35 H -0.225 1.225 36 H 0.184 0.816 37 H 0.199 0.801 38 H 0.186 0.814 39 H 0.191 0.809 40 H 0.253 0.747 41 H 0.111 0.889 42 H 0.100 0.900 43 H 0.086 0.914 44 H 0.091 0.909 45 H 0.276 0.724 46 H 0.288 0.712 47 H 0.092 0.908 48 H 0.090 0.910 49 H 0.101 0.899 50 H 0.075 0.925 51 H 0.269 0.731 52 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.294 -2.008 -2.838 3.489 hybrid contribution -1.038 1.503 -0.296 1.851 sum -0.745 -0.505 -3.134 3.261 Atomic orbital electron populations 1.86638 1.17263 1.80348 1.50036 1.24469 0.83509 1.11966 0.94325 0.93669 0.90490 0.72134 0.76907 1.23149 1.00782 0.94191 0.92056 1.21839 1.03990 0.95769 0.98415 1.22245 1.00796 0.98967 0.97096 1.20605 1.04562 0.87857 0.91409 1.17958 0.95423 0.93996 0.90274 1.21060 0.99359 0.99350 0.93042 1.21186 0.93824 0.95241 0.96668 1.20559 1.05425 0.95201 0.97050 1.18175 0.79200 0.84359 0.83693 1.90817 1.51959 1.25265 1.76022 1.45851 1.56839 1.12325 1.21181 1.21009 0.91002 1.00160 0.83599 0.91144 1.21746 1.00906 0.99311 0.93467 1.21475 0.91768 1.02978 0.97908 1.19826 0.93458 1.02445 0.86000 0.87183 1.25233 1.01180 0.81918 0.99626 1.74183 1.14318 1.27870 1.01781 1.74192 1.18978 1.07087 1.19088 1.27282 0.98385 0.96101 0.90422 1.44102 1.43325 1.11102 1.19851 1.21532 1.00629 0.98137 0.94324 1.21812 0.93982 1.03136 0.96985 1.18489 0.94702 0.84199 0.91266 1.84732 1.37478 1.28460 1.80183 1.21568 1.01174 0.97614 0.96930 1.83936 1.58231 1.38440 1.26875 0.76078 0.82487 1.20694 1.22470 0.81573 0.80053 0.81395 0.80918 0.74719 0.88861 0.89954 0.91422 0.90911 0.72369 0.71178 0.90843 0.90987 0.89877 0.92468 0.73138 0.84600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.21 12.88 -148.98 -1.92 -2.13 16 2 C -0.03 0.07 2.98 71.24 0.21 0.28 16 3 Si 0.76 -0.88 32.11 68.60 2.20 1.33 16 4 C -0.05 -0.01 6.20 24.90 0.15 0.14 16 5 C -0.18 0.19 10.78 22.11 0.24 0.43 16 6 C -0.17 0.42 10.25 22.40 0.23 0.65 16 7 C 0.01 0.00 7.02 24.24 0.17 0.17 16 8 C 0.02 -0.02 5.87 -20.08 -0.12 -0.13 16 9 C -0.11 0.70 9.48 22.26 0.21 0.91 16 10 C -0.05 0.36 9.47 22.24 0.21 0.57 16 11 C -0.18 -0.01 5.89 -19.97 -0.12 -0.12 16 12 C 0.56 1.21 7.72 86.62 0.67 1.88 16 13 O -0.56 -5.82 14.80 16.88 0.25 -5.57 16 14 N -0.71 3.85 5.03 -445.92 -2.24 1.61 16 15 C 0.15 -0.79 2.45 44.99 0.11 -0.68 16 16 H 0.07 -0.04 7.58 -2.39 -0.02 -0.05 16 17 C -0.12 1.05 5.39 30.60 0.16 1.22 16 18 C -0.10 0.65 5.19 30.60 0.16 0.81 16 19 C 0.00 -0.02 2.66 -11.54 -0.03 -0.05 16 20 H 0.11 -0.50 8.14 -2.39 -0.02 -0.52 16 21 C 0.19 0.23 6.99 137.98 0.96 1.19 16 22 N -0.34 -3.52 12.21 -50.15 -0.61 -4.13 16 23 N -0.35 -3.58 12.21 -59.99 -0.73 -4.32 16 24 C 0.17 -0.12 13.19 180.11 2.37 2.26 16 25 N -0.57 2.29 5.96 -189.85 -1.13 1.16 16 26 C -0.11 0.72 4.97 30.59 0.15 0.88 16 27 C -0.12 0.69 5.49 30.59 0.17 0.86 16 28 C 0.16 0.56 6.71 22.81 0.15 0.71 16 29 O -0.50 -2.93 11.56 -69.00 -0.80 -3.72 16 30 C -0.15 -0.32 9.65 22.61 0.22 -0.10 16 31 O -0.18 -0.45 8.79 -5.99 -0.05 -0.51 16 32 H 0.39 -1.66 8.70 -74.06 -0.64 -2.31 16 33 H 0.16 -0.97 7.96 -2.39 -0.02 -0.98 16 34 H -0.28 -1.18 7.11 99.48 0.71 -0.48 16 35 H -0.30 -1.74 7.11 99.48 0.71 -1.03 16 36 H 0.17 -0.63 8.06 -2.91 -0.02 -0.65 16 37 H 0.18 -1.56 7.24 -2.91 -0.02 -1.58 16 38 H 0.17 -2.09 6.95 -2.91 -0.02 -2.11 16 39 H 0.17 -2.61 6.37 -2.91 -0.02 -2.63 16 40 H 0.41 -4.97 6.61 -92.71 -0.61 -5.58 16 41 H 0.09 -1.11 8.14 -2.39 -0.02 -1.13 16 42 H 0.08 -0.75 8.14 -2.39 -0.02 -0.77 16 43 H 0.07 -0.42 8.14 -2.39 -0.02 -0.44 16 44 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 45 H 0.26 -2.72 8.06 -2.91 -0.02 -2.74 16 46 H 0.44 -4.95 8.29 -92.71 -0.77 -5.72 16 47 H 0.07 -0.43 8.14 -2.39 -0.02 -0.45 16 48 H 0.07 -0.57 7.52 -2.39 -0.02 -0.59 16 49 H 0.08 -0.64 8.14 -2.39 -0.02 -0.66 16 50 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 51 H 0.41 -0.57 9.06 -74.06 -0.67 -1.24 16 52 H 0.14 0.32 7.90 -2.91 -0.02 0.29 16 Total: 0.00 -35.83 433.56 -0.36 -36.19 By element: Atomic # 1 Polarization: -30.17 SS G_CDS: -1.62 Total: -31.79 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: 6.29 Total: 11.88 kcal Atomic # 7 Polarization: -0.96 SS G_CDS: -4.72 Total: -5.68 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: -2.52 Total: -11.93 kcal Atomic # 14 Polarization: -0.88 SS G_CDS: 2.20 Total: 1.33 kcal Total: -35.83 -0.36 -36.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16624780_12807986.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.523 kcal (2) G-P(sol) polarization free energy of solvation -35.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds