Wall clock time and date at job start Sun Mar 7 2021 05:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39282 * 121.03554 * 2 1 4 4 C 1.46496 * 134.19687 * 359.95891 * 3 2 1 5 5 C 1.50699 * 126.59670 * 0.26626 * 4 3 2 6 6 O 1.42905 * 109.47191 * 75.03126 * 5 4 3 7 7 Si 1.86308 * 109.46954 * 195.02922 * 5 4 3 8 8 C 1.34173 * 106.80360 * 180.31258 * 4 3 2 9 9 N 1.36951 * 109.95206 * 0.02562 * 8 4 3 10 10 C 1.37150 * 110.11367 * 359.97438 * 9 8 4 11 11 N 1.32824 * 132.97199 * 180.02562 * 10 9 8 12 12 C 1.31303 * 121.89409 * 179.97438 * 11 10 9 13 13 C 1.39752 * 121.02803 * 179.76274 * 2 1 3 14 14 C 1.47666 * 120.45519 * 359.96875 * 13 2 1 15 15 O 1.21571 * 119.99890 * 353.77275 * 14 13 2 16 16 N 1.34778 * 119.99845 * 173.76823 * 14 13 2 17 17 C 1.46501 * 119.99999 * 180.02562 * 16 14 13 18 18 H 1.09006 * 109.46732 * 34.99918 * 17 16 14 19 19 C 1.52999 * 109.47356 * 154.99924 * 17 16 14 20 20 C 1.53003 * 109.47138 * 180.02562 * 19 17 16 21 21 C 1.53002 * 109.46981 * 299.99866 * 20 19 17 22 22 H 1.08993 * 109.47148 * 300.00070 * 21 20 19 23 23 C 1.50693 * 109.46827 * 179.97438 * 21 20 19 24 24 N 1.30529 * 126.34369 * 95.02674 * 23 21 20 25 25 N 1.28597 * 109.67296 * 179.97438 * 24 23 21 26 26 C 1.30521 * 109.67062 * 0.02562 * 25 24 23 27 27 N 1.35493 * 107.31154 * 359.76699 * 26 25 24 28 28 C 1.52999 * 109.47075 * 60.00095 * 21 20 19 29 29 C 1.53003 * 109.47478 * 299.99977 * 28 21 20 30 30 H 1.09005 * 109.46726 * 263.96031 * 1 2 3 31 31 H 1.09001 * 109.46764 * 23.95401 * 1 2 3 32 32 H 1.09001 * 109.47561 * 143.96089 * 1 2 3 33 33 H 1.08995 * 109.47704 * 315.02932 * 5 4 3 34 34 H 0.96702 * 113.99919 * 59.99450 * 6 5 4 35 35 H 1.48499 * 109.99771 * 180.02562 * 7 5 4 36 36 H 1.48499 * 109.99696 * 301.31946 * 7 5 4 37 37 H 1.08000 * 125.02614 * 180.02562 * 8 4 3 38 38 H 0.97008 * 124.94174 * 179.97438 * 9 8 4 39 39 H 1.08002 * 119.31178 * 180.02562 * 12 11 10 40 40 H 0.97003 * 120.00274 * 359.97438 * 16 14 13 41 41 H 1.08993 * 109.47153 * 59.99925 * 19 17 16 42 42 H 1.08997 * 109.47193 * 299.99840 * 19 17 16 43 43 H 1.08993 * 109.47236 * 59.99882 * 20 19 17 44 44 H 1.08999 * 109.46804 * 180.02562 * 20 19 17 45 45 H 1.08001 * 126.34656 * 179.97438 * 26 25 24 46 46 H 0.97000 * 126.98132 * 180.22666 * 27 26 25 47 47 H 1.08997 * 109.47193 * 180.02562 * 28 21 20 48 48 H 1.09006 * 109.47205 * 59.99619 * 28 21 20 49 49 H 1.09001 * 109.46788 * 300.00457 * 29 28 21 50 50 H 1.08991 * 109.47304 * 179.97438 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2251 1.1934 0.0000 4 6 1.8516 2.6100 -0.0008 5 6 0.4527 3.1704 0.0038 6 8 -0.1138 3.0265 1.3078 7 14 0.5053 4.9754 -0.4547 8 6 2.9948 3.3125 -0.0073 9 7 4.0669 2.4604 -0.0114 10 6 3.6348 1.1587 -0.0069 11 7 4.2720 -0.0067 -0.0077 12 6 3.6266 -1.1502 -0.0020 13 6 2.2273 -1.1975 0.0050 14 6 1.5223 -2.4950 0.0110 15 8 0.3125 -2.5289 0.1259 16 7 2.2201 -3.6417 -0.1109 17 6 1.5207 -4.9289 -0.1055 18 1 0.5556 -4.8201 -0.6005 19 6 2.3609 -5.9691 -0.8491 20 6 1.6300 -7.3133 -0.8440 21 6 1.4134 -7.7704 0.6000 22 1 2.3783 -7.8795 1.0952 23 6 0.6931 -9.0940 0.6051 24 7 1.2448 -10.2747 0.6792 25 7 0.3325 -11.1808 0.6588 26 6 -0.8424 -10.6195 0.5701 27 7 -0.6475 -9.2790 0.5384 28 6 0.5733 -6.7303 1.3437 29 6 1.3040 -5.3860 1.3385 30 1 -0.3633 -0.1081 1.0220 31 1 -0.3633 0.9392 -0.4172 32 1 -0.3634 -0.8310 -0.6046 33 1 -0.1578 2.6295 -0.7192 34 1 0.3789 3.4833 2.0033 35 1 -0.8682 5.5400 -0.4532 36 1 1.3605 5.7185 0.5053 37 1 3.0598 4.3905 -0.0091 38 1 4.9966 2.7372 -0.0167 39 1 4.1868 -2.0736 -0.0026 40 1 3.1854 -3.6146 -0.2031 41 1 3.3259 -6.0778 -0.3542 42 1 2.5148 -5.6436 -1.8779 43 1 0.6652 -7.2042 -1.3391 44 1 2.2289 -8.0544 -1.3734 45 1 -1.7940 -11.1289 0.5327 46 1 -1.3291 -8.5915 0.4783 47 1 0.4193 -7.0557 2.3725 48 1 -0.3916 -6.6211 0.8484 49 1 2.2689 -5.4952 1.8336 50 1 0.7053 -4.6450 1.8679 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16624780_12890568.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:34:00 Heat of formation + Delta-G solvation = 80.058605 kcal Electronic energy + Delta-G solvation = -34814.077403 eV Core-core repulsion = 30230.483459 eV Total energy + Delta-G solvation = -4583.593943 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 383.174 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -44.09369 -42.87847 -41.21075 -39.64667 -38.61144 -37.85907 -35.92274 -34.91067 -34.54030 -32.70252 -32.03985 -31.93834 -31.03950 -29.46430 -28.72272 -26.55622 -25.15936 -24.46490 -24.13068 -23.83330 -23.19183 -22.17147 -21.65499 -21.09589 -20.69299 -19.36409 -19.30435 -18.80836 -17.84052 -17.61838 -17.20775 -16.80483 -16.70797 -16.55897 -16.35652 -16.28470 -15.82218 -15.66702 -15.51683 -15.30270 -15.22234 -14.92016 -14.71194 -14.30894 -14.05678 -14.02632 -13.72794 -13.64954 -13.55126 -13.41732 -13.25869 -13.05630 -12.75812 -12.49728 -12.45173 -12.39459 -12.27813 -11.85444 -11.80350 -11.77952 -11.56010 -11.28757 -11.18954 -11.06664 -10.51577 -10.25328 -10.15742 -10.09870 -9.61659 -9.17262 -5.03844 -0.25618 -0.07993 0.84289 1.19880 1.33951 1.47289 1.57833 1.79589 1.89044 1.90911 1.95352 2.03233 2.82430 3.10466 3.24277 3.35232 3.41143 3.48211 3.51392 3.56199 3.68616 3.73112 3.75121 3.82775 3.98033 4.03699 4.07064 4.17055 4.18673 4.22859 4.24696 4.25752 4.36999 4.39613 4.49881 4.52692 4.62523 4.65451 4.77098 4.84617 4.87722 4.92754 4.93577 4.96382 5.03420 5.10699 5.14505 5.17039 5.18837 5.35012 5.41106 5.54112 5.74822 6.06423 6.06554 6.41036 6.43902 6.82967 7.21135 7.78783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.085 3.915 3 C -0.149 4.149 4 C -0.177 4.177 5 C -0.044 4.044 6 O -0.526 6.526 7 Si 0.684 3.316 8 C 0.067 3.933 9 N -0.569 5.569 10 C 0.308 3.692 11 N -0.504 5.504 12 C 0.181 3.819 13 C -0.235 4.235 14 C 0.574 3.426 15 O -0.529 6.529 16 N -0.726 5.726 17 C 0.146 3.854 18 H 0.091 0.909 19 C -0.126 4.126 20 C -0.106 4.106 21 C -0.003 4.003 22 H 0.110 0.890 23 C 0.186 3.814 24 N -0.291 5.291 25 N -0.296 5.296 26 C 0.154 3.846 27 N -0.581 5.581 28 C -0.114 4.114 29 C -0.128 4.128 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.119 0.881 34 H 0.374 0.626 35 H -0.254 1.254 36 H -0.258 1.258 37 H 0.183 0.817 38 H 0.426 0.574 39 H 0.162 0.838 40 H 0.399 0.601 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.067 0.933 44 H 0.080 0.920 45 H 0.222 0.778 46 H 0.429 0.571 47 H 0.074 0.926 48 H 0.065 0.935 49 H 0.072 0.928 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.680 5.885 -2.614 6.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.077 3.923 3 C -0.155 4.155 4 C -0.184 4.184 5 C -0.154 4.154 6 O -0.332 6.332 7 Si 0.585 3.415 8 C -0.060 4.060 9 N -0.175 5.175 10 C 0.075 3.925 11 N -0.217 5.217 12 C 0.012 3.988 13 C -0.242 4.242 14 C 0.362 3.638 15 O -0.407 6.407 16 N -0.377 5.377 17 C 0.041 3.959 18 H 0.109 0.891 19 C -0.164 4.164 20 C -0.145 4.145 21 C -0.024 4.024 22 H 0.128 0.872 23 C -0.083 4.083 24 N -0.132 5.132 25 N -0.135 5.135 26 C -0.136 4.136 27 N -0.194 5.194 28 C -0.153 4.153 29 C -0.167 4.167 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.115 0.885 33 H 0.137 0.863 34 H 0.222 0.778 35 H -0.178 1.178 36 H -0.183 1.183 37 H 0.200 0.800 38 H 0.264 0.736 39 H 0.179 0.821 40 H 0.235 0.765 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.098 0.902 45 H 0.239 0.761 46 H 0.269 0.731 47 H 0.092 0.908 48 H 0.083 0.917 49 H 0.090 0.910 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.388 5.268 -2.503 5.995 hybrid contribution -1.114 1.097 1.098 1.911 sum 0.274 6.366 -1.404 6.525 Atomic orbital electron populations 1.21170 0.88731 1.03706 1.04259 1.19925 0.97141 0.89180 0.86066 1.19454 0.92766 0.93515 1.09808 1.20618 0.95218 0.91057 1.11534 1.24463 0.90995 1.11687 0.88255 1.86637 1.54298 1.75896 1.16346 0.95179 0.82657 0.73614 0.90062 1.21798 0.85117 0.95970 1.03081 1.41519 1.09608 1.02722 1.63640 1.18502 0.89351 0.85889 0.98784 1.66437 1.40579 0.96013 1.18660 1.22513 0.90089 0.94447 0.91725 1.20432 0.94757 0.93757 1.15293 1.17864 0.86809 0.83245 0.75910 1.90754 1.13566 1.87060 1.49294 1.45953 1.10821 1.05525 1.75419 1.21022 0.97028 0.81710 0.96090 0.89061 1.21815 0.99299 0.93891 1.01444 1.21525 1.01552 0.96736 0.94713 1.19789 0.99048 0.85553 0.98037 0.87175 1.24875 0.81270 0.98444 1.03711 1.74308 1.24768 0.95682 1.18413 1.74306 0.96437 1.25170 1.17633 1.26581 1.01712 0.80811 1.04451 1.44136 1.09147 1.09661 1.56421 1.21601 0.98553 0.94232 1.00943 1.21904 1.01537 0.96332 0.96880 0.89596 0.91212 0.88526 0.86289 0.77825 1.17816 1.18261 0.79975 0.73575 0.82068 0.76539 0.90527 0.90390 0.91456 0.90157 0.76134 0.73119 0.90762 0.91678 0.90979 0.90570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.27 8.68 36.00 0.31 0.04 16 2 C 0.09 0.20 5.98 -103.67 -0.62 -0.42 16 3 C -0.15 -0.28 6.16 -105.13 -0.65 -0.93 16 4 C -0.18 0.06 5.57 -102.73 -0.57 -0.51 16 5 C -0.04 0.04 2.08 36.00 0.07 0.12 16 6 O -0.53 -0.27 12.88 -35.23 -0.45 -0.72 16 7 Si 0.68 -1.70 30.83 -169.99 -5.24 -6.94 16 8 C 0.07 -0.15 10.44 -16.70 -0.17 -0.33 16 9 N -0.57 0.76 6.04 -12.12 -0.07 0.69 16 10 C 0.31 0.51 8.42 -155.71 -1.31 -0.80 16 11 N -0.50 -0.99 10.37 -11.96 -0.12 -1.11 16 12 C 0.18 0.04 10.67 -17.11 -0.18 -0.14 16 13 C -0.24 -0.32 5.89 -104.82 -0.62 -0.94 16 14 C 0.57 0.69 7.68 -12.41 -0.10 0.60 16 15 O -0.53 -2.10 13.16 5.30 0.07 -2.03 16 16 N -0.73 1.39 5.03 -54.80 -0.28 1.11 16 17 C 0.15 -0.33 2.45 -67.93 -0.17 -0.50 16 18 H 0.09 -0.06 7.58 -51.93 -0.39 -0.46 16 19 C -0.13 0.46 5.39 -26.73 -0.14 0.32 16 20 C -0.11 0.29 5.19 -26.73 -0.14 0.16 16 21 C 0.00 0.01 2.66 -91.77 -0.24 -0.24 16 22 H 0.11 -0.19 8.14 -51.93 -0.42 -0.61 16 23 C 0.19 0.14 6.99 -154.98 -1.08 -0.94 16 24 N -0.29 -1.41 12.21 32.80 0.40 -1.01 16 25 N -0.30 -1.41 12.21 29.69 0.36 -1.05 16 26 C 0.15 0.01 13.19 -89.95 -1.19 -1.18 16 27 N -0.58 0.91 5.96 -11.36 -0.07 0.84 16 28 C -0.11 0.33 4.97 -26.73 -0.13 0.19 16 29 C -0.13 0.28 5.50 -26.73 -0.15 0.14 16 30 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.09 5.06 -51.93 -0.26 -0.17 16 32 H 0.10 0.29 5.96 -51.93 -0.31 -0.02 16 33 H 0.12 -0.13 6.03 -51.93 -0.31 -0.44 16 34 H 0.37 -0.86 8.70 45.56 0.40 -0.47 16 35 H -0.25 -0.30 7.11 56.52 0.40 0.10 16 36 H -0.26 0.35 7.00 56.52 0.40 0.75 16 37 H 0.18 -0.97 6.28 -52.49 -0.33 -1.30 16 38 H 0.43 -1.62 8.96 -40.82 -0.37 -1.99 16 39 H 0.16 -0.55 6.43 -52.49 -0.34 -0.88 16 40 H 0.40 -1.71 6.68 -40.82 -0.27 -1.98 16 41 H 0.08 -0.34 8.14 -51.93 -0.42 -0.76 16 42 H 0.08 -0.29 8.14 -51.93 -0.42 -0.71 16 43 H 0.07 -0.19 8.14 -51.93 -0.42 -0.61 16 44 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 45 H 0.22 -0.95 8.06 -52.49 -0.42 -1.37 16 46 H 0.43 -2.09 8.28 -40.82 -0.34 -2.43 16 47 H 0.07 -0.17 8.14 -51.93 -0.42 -0.60 16 48 H 0.06 -0.23 7.51 -51.93 -0.39 -0.62 16 49 H 0.07 -0.19 8.14 -51.93 -0.42 -0.61 16 50 H 0.08 -0.02 8.14 -51.93 -0.42 -0.44 16 LS Contribution 399.49 15.07 6.02 6.02 Total: 0.00 -13.09 399.49 -12.80 -25.90 By element: Atomic # 1 Polarization: -10.00 SS G_CDS: -6.35 Total: -16.35 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -7.08 Total: -5.35 kcal Atomic # 7 Polarization: -0.75 SS G_CDS: 0.22 Total: -0.53 kcal Atomic # 8 Polarization: -2.37 SS G_CDS: -0.38 Total: -2.75 kcal Atomic # 14 Polarization: -1.70 SS G_CDS: -5.24 Total: -6.94 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -13.09 -12.80 -25.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16624780_12890568.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.956 kcal (2) G-P(sol) polarization free energy of solvation -13.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds