Wall clock time and date at job start Sun Mar 7 2021 05:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86298 * 109.47455 * 2 1 4 4 C 1.50706 * 109.46995 * 120.00209 * 2 1 3 5 5 C 1.38334 * 119.87340 * 64.99651 * 4 2 1 6 6 C 1.38000 * 120.12726 * 179.97438 * 5 4 2 7 7 C 1.39396 * 119.87002 * 0.02562 * 6 5 4 8 8 C 1.48277 * 120.12852 * 179.97438 * 7 6 5 9 9 C 1.39498 * 119.98215 * 180.02562 * 8 7 6 10 10 C 1.37667 * 120.03065 * 180.02562 * 9 8 7 11 11 C 1.39705 * 119.97065 * 359.97438 * 10 9 8 12 12 C 1.47726 * 120.02309 * 179.97438 * 11 10 9 13 13 O 1.21569 * 120.00012 * 0.02562 * 12 11 10 14 14 N 1.34775 * 119.99817 * 180.02562 * 12 11 10 15 15 C 1.46506 * 119.99693 * 180.02562 * 14 12 11 16 16 H 1.09004 * 109.47073 * 324.99560 * 15 14 12 17 17 C 1.52997 * 109.47289 * 84.99802 * 15 14 12 18 18 C 1.52996 * 109.47131 * 180.02562 * 17 15 14 19 19 C 1.53002 * 109.46969 * 299.99938 * 18 17 15 20 20 H 1.09004 * 109.46930 * 300.00004 * 19 18 17 21 21 C 1.50706 * 109.47305 * 180.02562 * 19 18 17 22 22 N 1.30509 * 126.34693 * 144.68689 * 21 19 18 23 23 N 1.28598 * 109.67680 * 179.82599 * 22 21 19 24 24 C 1.30529 * 109.66794 * 0.44866 * 23 22 21 25 25 N 1.35489 * 126.34469 * 325.00003 * 21 19 18 26 26 C 1.52997 * 109.47143 * 60.00070 * 19 18 17 27 27 C 1.52996 * 109.47131 * 299.99831 * 26 19 18 28 28 C 1.39706 * 119.95410 * 0.25766 * 11 10 9 29 29 C 1.37670 * 119.97304 * 359.51035 * 28 11 10 30 30 C 1.39404 * 119.74801 * 0.25382 * 7 6 5 31 31 C 1.37998 * 119.87104 * 359.51216 * 30 7 6 32 32 H 0.96693 * 113.99843 * 300.00010 * 1 2 3 33 33 H 1.09003 * 109.47106 * 239.99805 * 2 1 3 34 34 H 1.48498 * 110.00278 * 178.68026 * 3 2 1 35 35 H 1.48500 * 109.99926 * 300.00068 * 3 2 1 36 36 H 1.08005 * 119.93553 * 0.02571 * 5 4 2 37 37 H 1.07996 * 120.06173 * 180.02562 * 6 5 4 38 38 H 1.08006 * 119.98368 * 0.02634 * 9 8 7 39 39 H 1.08002 * 120.01302 * 179.97438 * 10 9 8 40 40 H 0.97000 * 120.00190 * 0.02562 * 14 12 11 41 41 H 1.09001 * 109.46832 * 299.99854 * 17 15 14 42 42 H 1.08996 * 109.46952 * 59.99873 * 17 15 14 43 43 H 1.09004 * 109.47552 * 179.97438 * 18 17 15 44 44 H 1.09004 * 109.47298 * 59.99717 * 18 17 15 45 45 H 1.07997 * 126.34533 * 179.73066 * 24 23 22 46 46 H 0.97004 * 126.97986 * 359.97438 * 25 21 19 47 47 H 1.09001 * 109.46832 * 180.02562 * 26 19 18 48 48 H 1.08992 * 109.47303 * 60.00452 * 26 19 18 49 49 H 1.09004 * 109.47298 * 300.00283 * 27 26 19 50 50 H 1.09004 * 109.47552 * 180.02562 * 27 26 19 51 51 H 1.08002 * 120.01488 * 179.73819 * 28 11 10 52 52 H 1.08005 * 119.98477 * 180.23472 * 29 28 11 53 53 H 1.08002 * 120.06190 * 179.74653 * 30 7 6 54 54 H 1.08003 * 119.93842 * 180.25221 * 31 30 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 1.2305 5 6 1.6830 -2.0613 1.3958 6 6 2.1410 -2.7172 2.5203 7 6 2.8546 -2.0158 3.4908 8 6 3.3489 -2.7147 4.7015 9 6 4.0623 -2.0097 5.6710 10 6 4.5221 -2.6577 6.7952 11 6 4.2735 -4.0220 6.9651 12 6 4.7669 -4.7186 8.1707 13 8 5.3891 -4.1047 9.0157 14 7 4.5273 -6.0348 8.3339 15 6 5.0161 -6.7256 9.5298 16 1 5.9761 -6.3031 9.8266 17 6 4.0083 -6.5506 10.6676 18 6 4.5191 -7.2715 11.9167 19 6 4.6905 -8.7609 11.6117 20 1 3.7306 -9.1838 11.3151 21 6 5.1930 -9.4712 12.8423 22 7 4.8789 -10.6803 13.2200 23 7 5.4933 -10.9658 14.3131 24 6 6.2200 -9.9481 14.6873 25 7 6.0502 -8.9706 13.7645 26 6 5.6983 -8.9359 10.4739 27 6 5.1874 -8.2151 9.2248 28 6 3.5632 -4.7282 5.9912 29 6 3.1002 -4.0770 4.8701 30 6 3.0968 -0.6534 3.3216 31 6 2.6382 -0.0091 2.1907 32 1 -0.3933 0.4417 0.7650 33 1 1.7924 -0.5139 -0.8900 34 1 3.5347 1.7702 0.0321 35 1 1.5616 2.4678 -1.2085 36 1 1.1303 -2.6038 0.6430 37 1 1.9468 -3.7718 2.6481 38 1 4.2540 -0.9549 5.5396 39 1 5.0748 -2.1117 7.5454 40 1 4.0312 -6.5247 7.6595 41 1 3.8866 -5.4895 10.8852 42 1 3.0484 -6.9731 10.3709 43 1 3.8014 -7.1465 12.7275 44 1 5.4790 -6.8486 12.2133 45 1 6.8415 -9.8952 15.5689 46 1 6.4594 -8.0912 13.7641 47 1 5.8200 -9.9970 10.2564 48 1 6.6581 -8.5131 10.7705 49 1 4.2276 -8.6380 8.9283 50 1 5.9052 -8.3401 8.4140 51 1 3.3741 -5.7837 6.1196 52 1 2.5477 -4.6220 4.1189 53 1 3.6457 -0.1042 4.0722 54 1 2.8288 1.0455 2.0566 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16624780_13158362.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:34:03 Heat of formation + Delta-G solvation = 56.392496 kcal Electronic energy + Delta-G solvation = -35700.742909 eV Core-core repulsion = 30990.522267 eV Total energy + Delta-G solvation = -4710.220642 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 405.184 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -44.14711 -41.54362 -40.81510 -39.73735 -38.90142 -37.49973 -35.81240 -34.61618 -34.04130 -32.73125 -32.32311 -31.88303 -31.55519 -30.86689 -29.43993 -26.98289 -25.07510 -24.64687 -24.27974 -23.85950 -23.27944 -22.57823 -22.34904 -21.93483 -21.30483 -20.89525 -19.31583 -19.20184 -18.41961 -17.74472 -17.48404 -16.88068 -16.83875 -16.43694 -16.34101 -16.30300 -16.08228 -15.91947 -15.64272 -15.39393 -15.17025 -15.10830 -14.97842 -14.88051 -14.78305 -14.31956 -14.26730 -14.06046 -14.02540 -13.72338 -13.56124 -13.29666 -13.15661 -12.83995 -12.73442 -12.53252 -12.40174 -12.28963 -12.20082 -12.10904 -11.93740 -11.83713 -11.67377 -11.59740 -11.51385 -11.31514 -11.01998 -10.75432 -10.41358 -10.25574 -10.12050 -10.04610 -9.95305 -9.06379 -5.01434 -0.67587 0.36601 0.40946 0.51364 0.85992 1.30422 1.62246 1.81143 1.84873 1.89265 1.95708 2.06692 2.62148 3.02522 3.16534 3.41129 3.51795 3.55781 3.64464 3.66135 3.70185 3.81179 3.84439 3.90019 3.98256 4.02274 4.06477 4.12886 4.20621 4.28494 4.29655 4.32419 4.32468 4.37940 4.40224 4.43612 4.47800 4.50792 4.63452 4.67122 4.70088 4.78898 4.89665 4.92883 5.00280 5.00794 5.04157 5.07863 5.09452 5.14806 5.16138 5.21777 5.24612 5.29525 5.29768 5.42678 5.47838 5.50661 5.66432 5.81436 5.93764 6.23695 6.48060 6.75856 7.15119 7.70595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.074 4.074 3 Si 0.771 3.229 4 C -0.120 4.120 5 C -0.103 4.103 6 C -0.108 4.108 7 C -0.060 4.060 8 C -0.024 4.024 9 C -0.123 4.123 10 C -0.071 4.071 11 C -0.152 4.152 12 C 0.558 3.442 13 O -0.578 6.578 14 N -0.709 5.709 15 C 0.145 3.855 16 H 0.073 0.927 17 C -0.122 4.122 18 C -0.107 4.107 19 C 0.003 3.997 20 H 0.109 0.891 21 C 0.192 3.808 22 N -0.342 5.342 23 N -0.355 5.355 24 C 0.169 3.831 25 N -0.569 5.569 26 C -0.102 4.102 27 C -0.116 4.116 28 C -0.075 4.075 29 C -0.122 4.122 30 C -0.107 4.107 31 C -0.119 4.119 32 H 0.395 0.605 33 H 0.106 0.894 34 H -0.287 1.287 35 H -0.301 1.301 36 H 0.130 0.870 37 H 0.146 0.854 38 H 0.148 0.852 39 H 0.129 0.871 40 H 0.414 0.586 41 H 0.055 0.945 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.261 0.739 46 H 0.445 0.555 47 H 0.073 0.927 48 H 0.069 0.931 49 H 0.091 0.909 50 H 0.083 0.917 51 H 0.158 0.842 52 H 0.154 0.846 53 H 0.147 0.853 54 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.218 3.625 -1.056 3.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.184 4.184 3 Si 0.678 3.322 4 C -0.120 4.120 5 C -0.121 4.121 6 C -0.126 4.126 7 C -0.060 4.060 8 C -0.024 4.024 9 C -0.140 4.140 10 C -0.090 4.090 11 C -0.155 4.155 12 C 0.347 3.653 13 O -0.459 6.459 14 N -0.360 5.360 15 C 0.041 3.959 16 H 0.092 0.908 17 C -0.161 4.161 18 C -0.146 4.146 19 C -0.018 4.018 20 H 0.127 0.873 21 C -0.079 4.079 22 N -0.182 5.182 23 N -0.194 5.194 24 C -0.121 4.121 25 N -0.183 5.183 26 C -0.141 4.141 27 C -0.154 4.154 28 C -0.093 4.093 29 C -0.139 4.139 30 C -0.125 4.125 31 C -0.136 4.136 32 H 0.245 0.755 33 H 0.124 0.876 34 H -0.214 1.214 35 H -0.230 1.230 36 H 0.148 0.852 37 H 0.163 0.837 38 H 0.166 0.834 39 H 0.146 0.854 40 H 0.253 0.747 41 H 0.074 0.926 42 H 0.099 0.901 43 H 0.091 0.909 44 H 0.092 0.908 45 H 0.277 0.723 46 H 0.289 0.711 47 H 0.091 0.909 48 H 0.088 0.912 49 H 0.109 0.891 50 H 0.102 0.898 51 H 0.176 0.824 52 H 0.171 0.829 53 H 0.165 0.835 54 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.079 2.757 -1.379 3.084 hybrid contribution 0.836 0.852 -0.261 1.222 sum 0.915 3.609 -1.640 4.068 Atomic orbital electron populations 1.86475 1.17163 1.82157 1.50519 1.25156 0.85326 1.10612 0.97273 0.93784 0.77892 0.75607 0.84930 1.20526 0.99397 0.95193 0.96877 1.21106 0.99045 0.94021 0.97944 1.21512 0.96921 1.00990 0.93150 1.18944 0.99160 0.93890 0.93992 1.19146 0.96141 0.93954 0.93160 1.21389 0.98247 1.01268 0.93141 1.21266 0.96926 0.93474 0.97300 1.20027 1.04240 0.95180 0.96085 1.18501 0.78640 0.82459 0.85726 1.90766 1.42549 1.67051 1.45543 1.45880 1.57383 1.08598 1.24187 1.21045 0.97607 0.92769 0.84500 0.90847 1.21821 0.99546 1.00423 0.94266 1.21531 1.02527 0.92228 0.98284 1.19823 1.00620 0.94206 0.87125 0.87308 1.25196 0.94315 0.92612 0.95788 1.74180 1.22425 1.13113 1.08468 1.74197 1.11039 1.25802 1.08344 1.27289 1.02041 0.84702 0.98095 1.44096 1.36713 1.18028 1.19508 1.21470 0.97861 1.01463 0.93274 1.21744 1.03785 0.91931 0.97963 1.21479 0.94718 1.00871 0.92224 1.21471 1.00382 0.93538 0.98530 1.21493 0.99257 0.93699 0.98014 1.21137 0.98385 1.00187 0.93870 0.75478 0.87635 1.21366 1.22955 0.85164 0.83681 0.83436 0.85351 0.74733 0.92591 0.90050 0.90857 0.90814 0.72327 0.71144 0.90860 0.91221 0.89081 0.89840 0.82429 0.82854 0.83508 0.83662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.45 12.83 -148.98 -1.91 -1.46 16 2 C -0.07 0.12 2.80 71.24 0.20 0.32 16 3 Si 0.77 -2.25 29.79 68.60 2.04 -0.20 16 4 C -0.12 0.19 5.36 -19.82 -0.11 0.08 16 5 C -0.10 0.12 9.67 22.24 0.21 0.34 16 6 C -0.11 0.26 9.43 22.49 0.21 0.48 16 7 C -0.06 0.10 5.88 -20.05 -0.12 -0.02 16 8 C -0.02 0.04 5.88 -20.00 -0.12 -0.08 16 9 C -0.12 0.14 9.41 22.44 0.21 0.35 16 10 C -0.07 -0.12 9.58 22.49 0.22 0.09 16 11 C -0.15 -0.08 5.88 -20.06 -0.12 -0.20 16 12 C 0.56 1.60 7.73 86.75 0.67 2.28 16 13 O -0.58 -6.37 16.00 -3.93 -0.06 -6.43 16 14 N -0.71 3.04 5.03 -445.50 -2.24 0.80 16 15 C 0.15 -0.68 2.45 44.99 0.11 -0.57 16 16 H 0.07 -0.03 7.58 -2.38 -0.02 -0.05 16 17 C -0.12 0.57 5.49 30.59 0.17 0.73 16 18 C -0.11 0.66 4.97 30.59 0.15 0.81 16 19 C 0.00 -0.01 2.66 -11.54 -0.03 -0.04 16 20 H 0.11 -0.42 8.14 -2.38 -0.02 -0.44 16 21 C 0.19 0.27 6.99 137.98 0.96 1.24 16 22 N -0.34 -3.61 12.21 -50.16 -0.61 -4.22 16 23 N -0.36 -3.64 12.21 -59.99 -0.73 -4.38 16 24 C 0.17 -0.11 13.19 180.11 2.38 2.27 16 25 N -0.57 2.26 5.96 -189.86 -1.13 1.13 16 26 C -0.10 0.62 5.19 30.59 0.16 0.78 16 27 C -0.12 0.99 5.39 30.59 0.16 1.15 16 28 C -0.07 0.37 9.52 22.49 0.21 0.58 16 29 C -0.12 0.53 9.41 22.44 0.21 0.75 16 30 C -0.11 0.31 9.43 22.49 0.21 0.52 16 31 C -0.12 0.39 8.65 22.24 0.19 0.58 16 32 H 0.40 -3.47 8.70 -74.06 -0.64 -4.11 16 33 H 0.11 -0.03 7.96 -2.39 -0.02 -0.05 16 34 H -0.29 -0.56 7.11 99.48 0.71 0.15 16 35 H -0.30 -1.51 7.11 99.48 0.71 -0.80 16 36 H 0.13 -0.27 8.06 -2.91 -0.02 -0.29 16 37 H 0.15 -0.97 6.19 -2.91 -0.02 -0.99 16 38 H 0.15 -0.74 6.19 -2.91 -0.02 -0.76 16 39 H 0.13 0.41 7.64 -2.91 -0.02 0.38 16 40 H 0.41 -4.26 6.62 -92.71 -0.61 -4.88 16 41 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 42 H 0.08 -0.51 8.14 -2.39 -0.02 -0.53 16 43 H 0.07 -0.39 8.14 -2.39 -0.02 -0.41 16 44 H 0.07 -0.57 7.52 -2.38 -0.02 -0.59 16 45 H 0.26 -2.73 8.06 -2.91 -0.02 -2.75 16 46 H 0.45 -4.98 8.29 -92.71 -0.77 -5.75 16 47 H 0.07 -0.29 8.14 -2.39 -0.02 -0.30 16 48 H 0.07 -0.44 8.14 -2.39 -0.02 -0.46 16 49 H 0.09 -0.99 8.14 -2.38 -0.02 -1.01 16 50 H 0.08 -0.74 8.14 -2.39 -0.02 -0.76 16 51 H 0.16 -1.86 6.39 -2.91 -0.02 -1.88 16 52 H 0.15 -1.38 6.19 -2.91 -0.02 -1.40 16 53 H 0.15 -0.99 6.19 -2.91 -0.02 -1.01 16 54 H 0.15 -1.07 4.89 -2.91 -0.01 -1.08 16 Total: 0.00 -32.62 434.78 0.51 -32.11 By element: Atomic # 1 Polarization: -28.78 SS G_CDS: -1.00 Total: -29.78 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: 6.16 Total: 12.43 kcal Atomic # 7 Polarization: -1.95 SS G_CDS: -4.72 Total: -6.67 kcal Atomic # 8 Polarization: -5.92 SS G_CDS: -1.97 Total: -7.89 kcal Atomic # 14 Polarization: -2.25 SS G_CDS: 2.04 Total: -0.20 kcal Total: -32.62 0.51 -32.11 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16624780_13158362.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.503 kcal (2) G-P(sol) polarization free energy of solvation -32.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds