Wall clock time and date at job start Sun Mar 7 2021 05:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50699 * 109.47152 * 239.99653 * 2 1 3 5 5 C 1.38889 * 119.67457 * 119.73589 * 4 2 1 6 6 C 1.36484 * 120.61589 * 179.70100 * 5 4 2 7 7 C 1.40058 * 119.82540 * 0.57851 * 6 5 4 8 8 C 1.41595 * 133.38209 * 179.67455 * 7 6 5 9 9 C 1.35868 * 107.73068 * 180.02562 * 8 7 6 10 10 C 1.47056 * 125.42947 * 180.02562 * 9 8 7 11 11 O 1.21646 * 119.99556 * 359.96788 * 10 9 8 12 12 N 1.34772 * 119.99987 * 179.97438 * 10 9 8 13 13 C 1.46507 * 119.99917 * 179.97438 * 12 10 9 14 14 H 1.08995 * 109.46865 * 34.99467 * 13 12 10 15 15 C 1.52999 * 109.46925 * 155.00059 * 13 12 10 16 16 C 1.53002 * 109.46622 * 180.02562 * 15 13 12 17 17 C 1.52996 * 109.47257 * 299.99696 * 16 15 13 18 18 H 1.08993 * 109.47173 * 300.00344 * 17 16 15 19 19 C 1.50705 * 109.47179 * 180.02562 * 17 16 15 20 20 N 1.30516 * 126.34343 * 95.02392 * 19 17 16 21 21 N 1.28598 * 109.66938 * 179.97438 * 20 19 17 22 22 C 1.30519 * 109.67396 * 0.02562 * 21 20 19 23 23 N 1.35495 * 107.30884 * 359.77356 * 22 21 20 24 24 C 1.52997 * 109.46979 * 60.00186 * 17 16 15 25 25 C 1.52998 * 109.47478 * 300.00050 * 24 17 16 26 26 N 1.38154 * 109.14322 * 359.97438 * 9 8 7 27 27 C 1.37486 * 108.78907 * 0.02562 * 26 9 8 28 28 C 1.37713 * 119.67711 * 300.00179 * 4 2 1 29 29 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 30 30 H 1.09008 * 109.46477 * 119.99697 * 2 1 3 31 31 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 32 32 H 1.48493 * 110.00375 * 61.31384 * 3 2 1 33 33 H 1.08002 * 119.69421 * 359.97438 * 5 4 2 34 34 H 1.07997 * 120.08393 * 180.26971 * 6 5 4 35 35 H 1.08002 * 126.13866 * 0.05520 * 8 7 6 36 36 H 0.97005 * 120.00399 * 359.97438 * 12 10 9 37 37 H 1.08995 * 109.46896 * 299.99494 * 15 13 12 38 38 H 1.08993 * 109.47314 * 59.99989 * 15 13 12 39 39 H 1.09000 * 109.47002 * 60.00223 * 16 15 13 40 40 H 1.08999 * 109.47011 * 179.97438 * 16 15 13 41 41 H 1.07998 * 126.34824 * 179.97438 * 22 21 20 42 42 H 0.96992 * 126.98496 * 180.22554 * 23 22 21 43 43 H 1.09001 * 109.46983 * 60.00446 * 24 17 16 44 44 H 1.09001 * 109.47330 * 179.97438 * 24 17 16 45 45 H 1.09009 * 109.46760 * 300.00383 * 25 24 17 46 46 H 1.08999 * 109.47515 * 180.02562 * 25 24 17 47 47 H 0.96997 * 125.60050 * 180.02562 * 26 9 8 48 48 H 1.08005 * 120.09585 * 359.97438 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 2.7249 -0.0275 -2.1430 6 6 3.1953 -0.6538 -3.2607 7 6 2.8665 -1.9944 -3.4984 8 6 3.1808 -2.9033 -4.5376 9 6 2.5827 -4.0879 -4.2462 10 6 2.6558 -5.3049 -5.0686 11 8 3.2918 -5.3009 -6.1055 12 7 2.0179 -6.4244 -4.6735 13 6 2.0902 -7.6366 -5.4931 14 1 3.0735 -7.7022 -5.9588 15 6 1.8615 -8.8643 -4.6091 16 6 1.9377 -10.1302 -5.4650 17 6 0.8620 -10.0767 -6.5516 18 1 -0.1215 -10.0113 -6.0864 19 6 0.9366 -11.3239 -7.3943 20 7 0.2300 -12.4094 -7.2335 21 7 0.5521 -13.2724 -8.1309 22 6 1.4791 -12.7768 -8.9045 23 7 1.7463 -11.5243 -8.4621 24 6 1.0906 -8.8490 -7.4356 25 6 1.0145 -7.5830 -6.5798 26 7 1.8960 -3.9674 -3.0535 27 6 2.0573 -2.6879 -2.5770 28 6 1.5946 -2.0290 -1.4417 29 1 -0.3934 0.4418 0.7650 30 1 1.7923 -0.5138 0.8901 31 1 1.5616 2.4678 -1.2086 32 1 1.5878 2.4586 1.2241 33 1 2.9757 1.0077 -1.9644 34 1 3.8152 -0.1157 -3.9624 35 1 3.7875 -2.6929 -5.4060 36 1 1.5109 -6.4277 -3.8465 37 1 2.6282 -8.9027 -3.8353 38 1 0.8782 -8.7987 -4.1435 39 1 2.9213 -10.1956 -5.9303 40 1 1.7752 -11.0049 -4.8352 41 1 1.9445 -13.2719 -9.7439 42 1 2.3880 -10.8989 -8.8332 43 1 2.0741 -8.9145 -7.9009 44 1 0.3245 -8.8111 -8.2100 45 1 0.0309 -7.5177 -6.1144 46 1 1.1770 -6.7084 -7.2096 47 1 1.3842 -4.6700 -2.6231 48 1 0.9737 -2.5504 -0.7281 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16624780_13158378.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:34:10 Heat of formation + Delta-G solvation = 65.593466 kcal Electronic energy + Delta-G solvation = -31661.316865 eV Core-core repulsion = 27298.059196 eV Total energy + Delta-G solvation = -4363.257669 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.164 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -44.14120 -42.70101 -41.05557 -39.49094 -38.80227 -37.10446 -35.90843 -34.61044 -33.34704 -32.60912 -32.13573 -31.18989 -30.43290 -29.66912 -26.95848 -25.09623 -24.35346 -24.01779 -23.38569 -22.93079 -22.15635 -21.88412 -21.44803 -20.91712 -19.57086 -19.38836 -18.57250 -17.99871 -17.64827 -16.98453 -16.85863 -16.57789 -16.46409 -16.39270 -16.04318 -15.74047 -15.52166 -15.20541 -15.08721 -14.97151 -14.82806 -14.72180 -14.27540 -14.23762 -13.89850 -13.87613 -13.53036 -13.48758 -12.90055 -12.72968 -12.57390 -12.49312 -12.37744 -12.34359 -12.13544 -11.91282 -11.83088 -11.68443 -11.66079 -11.37836 -11.21014 -10.94360 -10.52083 -10.34104 -10.19986 -9.31454 -8.81484 -4.96739 -0.34029 0.53259 0.79620 0.98438 1.25883 1.58727 1.71623 1.75986 1.86142 1.90912 1.95981 2.22944 2.73524 3.03543 3.28408 3.30153 3.41041 3.53718 3.60417 3.61988 3.77364 3.82266 3.88299 3.95892 4.01878 4.07319 4.11130 4.15003 4.18268 4.29504 4.30600 4.37248 4.40287 4.44884 4.46867 4.55417 4.58849 4.74565 4.78334 4.83455 4.84637 4.89610 4.96159 5.00516 5.05342 5.09880 5.19273 5.35388 5.39874 5.55125 5.60927 5.96246 6.01998 6.15830 6.31436 6.38588 6.93661 7.74312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.537 6.537 2 C -0.077 4.077 3 Si 0.686 3.314 4 C -0.041 4.041 5 C -0.143 4.143 6 C -0.050 4.050 7 C -0.117 4.117 8 C -0.098 4.098 9 C 0.010 3.990 10 C 0.587 3.413 11 O -0.517 6.517 12 N -0.726 5.726 13 C 0.145 3.855 14 H 0.094 0.906 15 C -0.126 4.126 16 C -0.106 4.106 17 C -0.003 4.003 18 H 0.110 0.890 19 C 0.185 3.815 20 N -0.291 5.291 21 N -0.296 5.296 22 C 0.155 3.845 23 N -0.581 5.581 24 C -0.114 4.114 25 C -0.128 4.128 26 N -0.579 5.579 27 C 0.116 3.884 28 C -0.103 4.103 29 H 0.380 0.620 30 H 0.077 0.923 31 H -0.254 1.254 32 H -0.262 1.262 33 H 0.130 0.870 34 H 0.133 0.867 35 H 0.158 0.842 36 H 0.397 0.603 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.081 0.919 41 H 0.223 0.777 42 H 0.429 0.571 43 H 0.066 0.934 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.077 0.923 47 H 0.417 0.583 48 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.588 2.528 2.669 5.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.344 6.344 2 C -0.186 4.186 3 Si 0.587 3.413 4 C -0.043 4.043 5 C -0.161 4.161 6 C -0.069 4.069 7 C -0.122 4.122 8 C -0.125 4.125 9 C -0.098 4.098 10 C 0.374 3.626 11 O -0.392 6.392 12 N -0.377 5.377 13 C 0.041 3.959 14 H 0.112 0.888 15 C -0.164 4.164 16 C -0.145 4.145 17 C -0.024 4.024 18 H 0.128 0.872 19 C -0.084 4.084 20 N -0.131 5.131 21 N -0.135 5.135 22 C -0.134 4.134 23 N -0.194 5.194 24 C -0.153 4.153 25 C -0.167 4.167 26 N -0.184 5.184 27 C 0.007 3.993 28 C -0.124 4.124 29 H 0.228 0.772 30 H 0.095 0.905 31 H -0.179 1.179 32 H -0.188 1.188 33 H 0.147 0.853 34 H 0.151 0.849 35 H 0.176 0.824 36 H 0.230 0.770 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.239 0.761 42 H 0.269 0.731 43 H 0.084 0.916 44 H 0.094 0.906 45 H 0.090 0.910 46 H 0.095 0.905 47 H 0.255 0.745 48 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.749 1.759 1.972 3.813 hybrid contribution -0.405 0.535 0.314 0.741 sum 2.343 2.294 2.286 3.998 Atomic orbital electron populations 1.86593 1.17776 1.80214 1.49822 1.24824 0.84489 1.11163 0.98124 0.94917 0.91731 0.74369 0.80252 1.18932 0.97338 0.92891 0.95103 1.20425 1.00879 0.99717 0.95090 1.20351 0.97888 0.92040 0.96624 1.18219 1.02759 0.94926 0.96298 1.20972 1.01519 0.90370 0.99641 1.20067 1.03604 0.96558 0.89614 1.17188 0.79090 0.81639 0.84681 1.90874 1.41568 1.83408 1.23364 1.45951 1.53494 1.11651 1.26569 1.21092 1.00715 0.82816 0.91324 0.88792 1.21813 1.03401 0.93014 0.98186 1.21524 0.98251 0.98169 0.96594 1.19777 1.02418 0.86657 0.93558 0.87198 1.24841 0.93150 0.99288 0.91124 1.74305 1.21676 0.98508 1.18623 1.74309 1.12219 1.23855 1.03150 1.26593 0.99784 0.84073 1.02988 1.44134 1.33810 1.15773 1.25640 1.21598 1.02592 0.93080 0.98064 1.21905 0.99372 0.98013 0.97399 1.41869 1.45522 1.11095 1.19871 1.18273 1.00004 0.84619 0.96450 1.19826 1.02204 0.94315 0.96037 0.77204 0.90465 1.17853 1.18759 0.85262 0.84885 0.82404 0.76961 0.90391 0.90584 0.91350 0.90060 0.76084 0.73102 0.91570 0.90604 0.90978 0.90473 0.74523 0.85658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.30 12.73 -35.23 -0.45 -0.75 16 2 C -0.08 0.05 2.80 36.01 0.10 0.15 16 3 Si 0.69 -0.92 29.75 -169.99 -5.06 -5.97 16 4 C -0.04 -0.03 5.43 -104.57 -0.57 -0.60 16 5 C -0.14 -0.03 8.59 -39.97 -0.34 -0.37 16 6 C -0.05 -0.02 10.06 -39.53 -0.40 -0.42 16 7 C -0.12 -0.19 6.16 -106.93 -0.66 -0.85 16 8 C -0.10 -0.15 10.53 -39.15 -0.41 -0.57 16 9 C 0.01 0.01 6.97 -82.29 -0.57 -0.57 16 10 C 0.59 0.52 7.76 -12.69 -0.10 0.42 16 11 O -0.52 -2.22 16.50 5.24 0.09 -2.13 16 12 N -0.73 1.76 5.07 -55.00 -0.28 1.48 16 13 C 0.14 -0.39 2.45 -67.93 -0.17 -0.55 16 14 H 0.09 -0.10 7.58 -51.93 -0.39 -0.50 16 15 C -0.13 0.52 5.39 -26.73 -0.14 0.37 16 16 C -0.11 0.33 5.19 -26.73 -0.14 0.20 16 17 C 0.00 0.01 2.66 -91.77 -0.24 -0.24 16 18 H 0.11 -0.22 8.14 -51.93 -0.42 -0.65 16 19 C 0.19 0.08 6.99 -154.99 -1.08 -1.00 16 20 N -0.29 -1.33 12.21 32.80 0.40 -0.93 16 21 N -0.30 -1.34 12.21 29.69 0.36 -0.98 16 22 C 0.15 -0.04 13.19 -89.94 -1.19 -1.22 16 23 N -0.58 1.09 5.96 -11.36 -0.07 1.02 16 24 C -0.11 0.37 4.97 -26.73 -0.13 0.24 16 25 C -0.13 0.33 5.50 -26.73 -0.15 0.18 16 26 N -0.58 0.58 6.07 -7.36 -0.04 0.54 16 27 C 0.12 0.12 7.25 -83.98 -0.61 -0.49 16 28 C -0.10 -0.08 9.61 -39.42 -0.38 -0.46 16 29 H 0.38 -1.27 8.74 45.56 0.40 -0.87 16 30 H 0.08 -0.19 7.96 -51.92 -0.41 -0.60 16 31 H -0.25 -0.49 7.11 56.52 0.40 -0.08 16 32 H -0.26 -0.18 7.11 56.52 0.40 0.22 16 33 H 0.13 -0.22 4.82 -52.49 -0.25 -0.47 16 34 H 0.13 -0.23 8.06 -52.49 -0.42 -0.65 16 35 H 0.16 0.13 8.06 -52.49 -0.42 -0.29 16 36 H 0.40 -1.96 7.66 -40.82 -0.31 -2.27 16 37 H 0.08 -0.32 8.14 -51.93 -0.42 -0.75 16 38 H 0.08 -0.37 8.14 -51.93 -0.42 -0.79 16 39 H 0.07 -0.22 8.14 -51.93 -0.42 -0.64 16 40 H 0.08 -0.17 8.14 -51.93 -0.42 -0.60 16 41 H 0.22 -1.01 8.06 -52.49 -0.42 -1.43 16 42 H 0.43 -2.24 8.28 -40.82 -0.34 -2.58 16 43 H 0.07 -0.26 7.52 -51.93 -0.39 -0.65 16 44 H 0.08 -0.20 8.14 -51.93 -0.42 -0.63 16 45 H 0.07 -0.21 8.14 -51.92 -0.42 -0.64 16 46 H 0.08 -0.05 8.14 -51.93 -0.42 -0.47 16 47 H 0.42 -1.73 8.12 -40.82 -0.33 -2.07 16 48 H 0.13 -0.05 8.06 -52.48 -0.42 -0.47 16 LS Contribution 394.27 15.07 5.94 5.94 Total: 0.00 -12.83 394.27 -12.59 -25.42 By element: Atomic # 1 Polarization: -11.56 SS G_CDS: -6.30 Total: -17.87 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -7.18 Total: -5.78 kcal Atomic # 7 Polarization: 0.76 SS G_CDS: 0.37 Total: 1.13 kcal Atomic # 8 Polarization: -2.52 SS G_CDS: -0.36 Total: -2.88 kcal Atomic # 14 Polarization: -0.92 SS G_CDS: -5.06 Total: -5.97 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -12.83 -12.59 -25.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16624780_13158378.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.018 kcal (2) G-P(sol) polarization free energy of solvation -12.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds