Wall clock time and date at job start Sun Mar 7 2021 05:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50699 * 109.47152 * 239.99653 * 2 1 3 5 5 C 1.38889 * 119.67457 * 119.73589 * 4 2 1 6 6 C 1.36484 * 120.61589 * 179.70100 * 5 4 2 7 7 C 1.40058 * 119.82540 * 0.57851 * 6 5 4 8 8 C 1.41595 * 133.38209 * 179.67455 * 7 6 5 9 9 C 1.35868 * 107.73068 * 180.02562 * 8 7 6 10 10 C 1.47056 * 125.42947 * 180.02562 * 9 8 7 11 11 O 1.21646 * 119.99556 * 359.96788 * 10 9 8 12 12 N 1.34772 * 119.99987 * 179.97438 * 10 9 8 13 13 C 1.46507 * 119.99917 * 179.97438 * 12 10 9 14 14 H 1.08995 * 109.46865 * 34.99467 * 13 12 10 15 15 C 1.52999 * 109.46925 * 155.00059 * 13 12 10 16 16 C 1.53002 * 109.46622 * 180.02562 * 15 13 12 17 17 C 1.52996 * 109.47257 * 299.99696 * 16 15 13 18 18 H 1.08993 * 109.47173 * 300.00344 * 17 16 15 19 19 C 1.50705 * 109.47179 * 180.02562 * 17 16 15 20 20 N 1.30516 * 126.34343 * 95.02392 * 19 17 16 21 21 N 1.28598 * 109.66938 * 179.97438 * 20 19 17 22 22 C 1.30519 * 109.67396 * 0.02562 * 21 20 19 23 23 N 1.35495 * 107.30884 * 359.77356 * 22 21 20 24 24 C 1.52997 * 109.46979 * 60.00186 * 17 16 15 25 25 C 1.52998 * 109.47478 * 300.00050 * 24 17 16 26 26 N 1.38154 * 109.14322 * 359.97438 * 9 8 7 27 27 C 1.37486 * 108.78907 * 0.02562 * 26 9 8 28 28 C 1.37713 * 119.67711 * 300.00179 * 4 2 1 29 29 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 30 30 H 1.09008 * 109.46477 * 119.99697 * 2 1 3 31 31 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 32 32 H 1.48493 * 110.00375 * 61.31384 * 3 2 1 33 33 H 1.08002 * 119.69421 * 359.97438 * 5 4 2 34 34 H 1.07997 * 120.08393 * 180.26971 * 6 5 4 35 35 H 1.08002 * 126.13866 * 0.05520 * 8 7 6 36 36 H 0.97005 * 120.00399 * 359.97438 * 12 10 9 37 37 H 1.08995 * 109.46896 * 299.99494 * 15 13 12 38 38 H 1.08993 * 109.47314 * 59.99989 * 15 13 12 39 39 H 1.09000 * 109.47002 * 60.00223 * 16 15 13 40 40 H 1.08999 * 109.47011 * 179.97438 * 16 15 13 41 41 H 1.07998 * 126.34824 * 179.97438 * 22 21 20 42 42 H 0.96992 * 126.98496 * 180.22554 * 23 22 21 43 43 H 1.09001 * 109.46983 * 60.00446 * 24 17 16 44 44 H 1.09001 * 109.47330 * 179.97438 * 24 17 16 45 45 H 1.09009 * 109.46760 * 300.00383 * 25 24 17 46 46 H 1.08999 * 109.47515 * 180.02562 * 25 24 17 47 47 H 0.96997 * 125.60050 * 180.02562 * 26 9 8 48 48 H 1.08005 * 120.09585 * 359.97438 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 2.7249 -0.0275 -2.1430 6 6 3.1953 -0.6538 -3.2607 7 6 2.8665 -1.9944 -3.4984 8 6 3.1808 -2.9033 -4.5376 9 6 2.5827 -4.0879 -4.2462 10 6 2.6558 -5.3049 -5.0686 11 8 3.2918 -5.3009 -6.1055 12 7 2.0179 -6.4244 -4.6735 13 6 2.0902 -7.6366 -5.4931 14 1 3.0735 -7.7022 -5.9588 15 6 1.8615 -8.8643 -4.6091 16 6 1.9377 -10.1302 -5.4650 17 6 0.8620 -10.0767 -6.5516 18 1 -0.1215 -10.0113 -6.0864 19 6 0.9366 -11.3239 -7.3943 20 7 0.2300 -12.4094 -7.2335 21 7 0.5521 -13.2724 -8.1309 22 6 1.4791 -12.7768 -8.9045 23 7 1.7463 -11.5243 -8.4621 24 6 1.0906 -8.8490 -7.4356 25 6 1.0145 -7.5830 -6.5798 26 7 1.8960 -3.9674 -3.0535 27 6 2.0573 -2.6879 -2.5770 28 6 1.5946 -2.0290 -1.4417 29 1 -0.3934 0.4418 0.7650 30 1 1.7923 -0.5138 0.8901 31 1 1.5616 2.4678 -1.2086 32 1 1.5878 2.4586 1.2241 33 1 2.9757 1.0077 -1.9644 34 1 3.8152 -0.1157 -3.9624 35 1 3.7875 -2.6929 -5.4060 36 1 1.5109 -6.4277 -3.8465 37 1 2.6282 -8.9027 -3.8353 38 1 0.8782 -8.7987 -4.1435 39 1 2.9213 -10.1956 -5.9303 40 1 1.7752 -11.0049 -4.8352 41 1 1.9445 -13.2719 -9.7439 42 1 2.3880 -10.8989 -8.8332 43 1 2.0741 -8.9145 -7.9009 44 1 0.3245 -8.8111 -8.2100 45 1 0.0309 -7.5177 -6.1144 46 1 1.1770 -6.7084 -7.2096 47 1 1.3842 -4.6700 -2.6231 48 1 0.9737 -2.5504 -0.7281 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16624780_13158378.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:34:09 Heat of formation + Delta-G solvation = 63.146094 kcal Electronic energy + Delta-G solvation = -31661.422991 eV Core-core repulsion = 27298.059196 eV Total energy + Delta-G solvation = -4363.363795 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.164 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -44.15679 -42.70414 -41.01266 -39.41630 -38.78437 -37.08436 -35.87918 -34.60577 -33.34492 -32.58470 -31.91019 -31.19398 -30.42642 -29.62987 -26.93256 -25.03451 -24.26364 -23.90687 -23.32628 -22.93563 -22.10402 -21.87564 -21.35788 -20.84003 -19.52509 -19.30485 -18.52424 -17.98508 -17.55619 -16.95837 -16.87186 -16.54762 -16.46713 -16.35832 -15.97352 -15.67313 -15.37324 -15.10113 -15.04885 -14.96197 -14.78057 -14.69155 -14.26942 -14.12026 -13.88317 -13.75403 -13.49104 -13.31710 -12.87138 -12.70467 -12.46138 -12.33050 -12.31744 -12.22811 -12.16161 -11.84686 -11.71520 -11.69440 -11.54359 -11.44146 -11.22118 -10.96680 -10.46017 -10.29955 -10.22910 -9.32516 -8.81603 -4.87426 -0.36590 0.52442 0.84954 0.94516 1.33665 1.64257 1.74459 1.83951 1.88279 1.95842 2.01155 2.18231 2.73574 3.14599 3.39960 3.47283 3.59828 3.63187 3.67823 3.81226 3.86888 3.96843 4.05169 4.09364 4.18201 4.22681 4.28155 4.29025 4.32443 4.38048 4.41953 4.44116 4.46874 4.50051 4.60226 4.64013 4.76516 4.89407 4.96273 4.98852 4.99372 5.02404 5.04993 5.14073 5.20917 5.22689 5.30746 5.39675 5.41243 5.54766 5.58495 5.97966 6.23112 6.25732 6.44116 6.61087 6.95418 7.69672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.083 4.083 3 Si 0.763 3.237 4 C -0.053 4.053 5 C -0.149 4.149 6 C -0.059 4.059 7 C -0.136 4.136 8 C -0.118 4.118 9 C 0.011 3.989 10 C 0.588 3.412 11 O -0.556 6.556 12 N -0.709 5.709 13 C 0.146 3.854 14 H 0.080 0.920 15 C -0.116 4.116 16 C -0.101 4.101 17 C 0.003 3.997 18 H 0.107 0.893 19 C 0.191 3.809 20 N -0.343 5.343 21 N -0.355 5.355 22 C 0.169 3.831 23 N -0.569 5.569 24 C -0.107 4.107 25 C -0.123 4.123 26 N -0.564 5.564 27 C 0.107 3.893 28 C -0.110 4.110 29 H 0.395 0.605 30 H 0.100 0.900 31 H -0.301 1.301 32 H -0.288 1.288 33 H 0.144 0.856 34 H 0.149 0.851 35 H 0.156 0.844 36 H 0.411 0.589 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.261 0.739 42 H 0.446 0.554 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.079 0.921 46 H 0.058 0.942 47 H 0.432 0.568 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.002 2.567 3.381 5.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.368 6.368 2 C -0.191 4.191 3 Si 0.669 3.331 4 C -0.055 4.055 5 C -0.168 4.168 6 C -0.077 4.077 7 C -0.140 4.140 8 C -0.145 4.145 9 C -0.099 4.099 10 C 0.375 3.625 11 O -0.434 6.434 12 N -0.360 5.360 13 C 0.042 3.958 14 H 0.099 0.901 15 C -0.154 4.154 16 C -0.141 4.141 17 C -0.018 4.018 18 H 0.125 0.875 19 C -0.080 4.080 20 N -0.182 5.182 21 N -0.194 5.194 22 C -0.121 4.121 23 N -0.183 5.183 24 C -0.146 4.146 25 C -0.162 4.162 26 N -0.170 5.170 27 C -0.004 4.004 28 C -0.131 4.131 29 H 0.246 0.754 30 H 0.117 0.883 31 H -0.228 1.228 32 H -0.215 1.215 33 H 0.161 0.839 34 H 0.167 0.833 35 H 0.174 0.826 36 H 0.248 0.752 37 H 0.103 0.897 38 H 0.108 0.892 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.277 0.723 42 H 0.289 0.711 43 H 0.095 0.905 44 H 0.091 0.909 45 H 0.098 0.902 46 H 0.077 0.923 47 H 0.272 0.728 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.142 1.761 2.737 4.524 hybrid contribution -0.550 0.563 0.063 0.789 sum 2.592 2.324 2.800 4.467 Atomic orbital electron populations 1.86546 1.18465 1.80689 1.51126 1.24979 0.84070 1.11656 0.98432 0.94053 0.90518 0.72299 0.76232 1.19216 0.97404 0.93163 0.95728 1.20647 1.00753 1.00397 0.94974 1.20611 0.98081 0.91914 0.97114 1.18448 1.03384 0.95605 0.96609 1.21095 1.02345 0.91069 1.00026 1.20033 1.03556 0.96306 0.90008 1.17217 0.78886 0.82231 0.84133 1.90853 1.43495 1.84063 1.25018 1.45839 1.52401 1.10834 1.26892 1.21107 1.00032 0.83086 0.91570 0.90147 1.21744 1.04443 0.91495 0.97750 1.21471 0.98041 0.98267 0.96275 1.19819 1.02664 0.85778 0.93532 0.87454 1.25199 0.92406 0.99013 0.91380 1.74185 1.23912 1.00037 1.20101 1.74193 1.14880 1.25452 1.04837 1.27294 0.98072 0.84182 1.02559 1.44091 1.33611 1.15720 1.24884 1.21530 1.03108 0.92231 0.97710 1.21835 0.99708 0.97449 0.97202 1.41770 1.45010 1.11020 1.19163 1.18412 1.00155 0.85229 0.96602 1.19986 1.02403 0.94526 0.96166 0.75448 0.88258 1.22843 1.21493 0.83883 0.83320 0.82596 0.75245 0.89712 0.89233 0.90987 0.90880 0.72312 0.71110 0.90549 0.90880 0.90236 0.92321 0.72758 0.84627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.32 12.73 -148.98 -1.90 -2.22 16 2 C -0.08 0.17 2.80 71.24 0.20 0.37 16 3 Si 0.76 -2.18 29.75 68.60 2.04 -0.14 16 4 C -0.05 -0.07 5.43 -19.83 -0.11 -0.17 16 5 C -0.15 -0.07 8.59 22.02 0.19 0.11 16 6 C -0.06 -0.08 10.06 22.30 0.22 0.14 16 7 C -0.14 -0.53 6.16 -21.36 -0.13 -0.66 16 8 C -0.12 -0.51 10.53 22.55 0.24 -0.27 16 9 C 0.01 0.02 6.97 39.91 0.28 0.30 16 10 C 0.59 1.27 7.76 86.56 0.67 1.94 16 11 O -0.56 -5.40 16.50 -4.18 -0.07 -5.47 16 12 N -0.71 3.80 5.07 -446.15 -2.26 1.53 16 13 C 0.15 -0.86 2.45 44.99 0.11 -0.75 16 14 H 0.08 -0.18 7.58 -2.39 -0.02 -0.20 16 15 C -0.12 1.09 5.39 30.59 0.16 1.26 16 16 C -0.10 0.70 5.19 30.59 0.16 0.86 16 17 C 0.00 -0.01 2.66 -11.54 -0.03 -0.05 16 18 H 0.11 -0.44 8.14 -2.39 -0.02 -0.46 16 19 C 0.19 0.21 6.99 137.98 0.96 1.18 16 20 N -0.34 -3.55 12.21 -50.15 -0.61 -4.16 16 21 N -0.35 -3.56 12.21 -59.99 -0.73 -4.30 16 22 C 0.17 -0.15 13.19 180.11 2.37 2.22 16 23 N -0.57 2.47 5.96 -189.86 -1.13 1.34 16 24 C -0.11 0.73 4.97 30.59 0.15 0.88 16 25 C -0.12 0.67 5.50 30.59 0.17 0.84 16 26 N -0.56 1.28 6.07 -177.19 -1.08 0.21 16 27 C 0.11 0.22 7.25 39.13 0.28 0.51 16 28 C -0.11 -0.14 9.61 22.37 0.22 0.07 16 29 H 0.40 -2.88 8.74 -74.06 -0.65 -3.53 16 30 H 0.10 -0.64 7.96 -2.38 -0.02 -0.66 16 31 H -0.30 -1.47 7.11 99.48 0.71 -0.76 16 32 H -0.29 -0.37 7.11 99.48 0.71 0.34 16 33 H 0.14 -0.49 4.82 -2.91 -0.01 -0.50 16 34 H 0.15 -0.45 8.06 -2.91 -0.02 -0.47 16 35 H 0.16 0.56 8.06 -2.91 -0.02 0.53 16 36 H 0.41 -4.59 7.66 -92.70 -0.71 -5.30 16 37 H 0.08 -0.84 8.14 -2.39 -0.02 -0.85 16 38 H 0.09 -1.03 8.14 -2.39 -0.02 -1.05 16 39 H 0.07 -0.53 8.14 -2.39 -0.02 -0.55 16 40 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 41 H 0.26 -2.79 8.06 -2.91 -0.02 -2.81 16 42 H 0.45 -5.20 8.28 -92.71 -0.77 -5.97 16 43 H 0.08 -0.67 7.52 -2.39 -0.02 -0.68 16 44 H 0.07 -0.42 8.14 -2.39 -0.02 -0.44 16 45 H 0.08 -0.54 8.14 -2.38 -0.02 -0.56 16 46 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 47 H 0.43 -4.01 8.12 -92.71 -0.75 -4.76 16 48 H 0.14 -0.21 8.06 -2.91 -0.02 -0.23 16 Total: 0.00 -32.32 394.27 -1.40 -33.73 By element: Atomic # 1 Polarization: -27.53 SS G_CDS: -1.78 Total: -29.31 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: 6.12 Total: 8.79 kcal Atomic # 7 Polarization: 0.45 SS G_CDS: -5.82 Total: -5.37 kcal Atomic # 8 Polarization: -5.73 SS G_CDS: -1.97 Total: -7.69 kcal Atomic # 14 Polarization: -2.18 SS G_CDS: 2.04 Total: -0.14 kcal Total: -32.32 -1.40 -33.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16624780_13158378.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.872 kcal (2) G-P(sol) polarization free energy of solvation -32.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds