Wall clock time and date at job start Sun Mar 7 2021 05:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86303 * 109.46916 * 2 1 4 4 C 1.50697 * 109.46740 * 240.00313 * 2 1 3 5 5 C 1.34705 * 125.66963 * 299.99511 * 4 2 1 6 6 C 1.40960 * 107.03628 * 179.97438 * 5 4 2 7 7 C 1.35944 * 106.74150 * 359.97438 * 6 5 4 8 8 C 1.47817 * 125.93221 * 179.97438 * 7 6 5 9 9 C 1.39804 * 119.99858 * 0.02562 * 8 7 6 10 10 C 1.37815 * 120.24476 * 179.97438 * 9 8 7 11 11 C 1.38780 * 120.24095 * 0.02562 * 10 9 8 12 12 O 1.35645 * 120.00067 * 180.02562 * 11 10 9 13 13 C 1.40248 * 119.99490 * 0.02562 * 11 10 9 14 14 C 1.47567 * 120.11848 * 179.97438 * 13 11 10 15 15 O 1.21593 * 120.00067 * 359.97438 * 14 13 11 16 16 N 1.34777 * 119.99983 * 179.97438 * 14 13 11 17 17 C 1.46504 * 119.99637 * 179.97438 * 16 14 13 18 18 H 1.08993 * 109.47378 * 324.99749 * 17 16 14 19 19 C 1.52999 * 109.47050 * 85.00741 * 17 16 14 20 20 C 1.52997 * 109.46991 * 179.97438 * 19 17 16 21 21 C 1.52996 * 109.47131 * 299.99311 * 20 19 17 22 22 H 1.08996 * 109.47452 * 300.00000 * 21 20 19 23 23 C 1.50703 * 109.47130 * 180.02562 * 21 20 19 24 24 N 1.30517 * 126.34751 * 144.69146 * 23 21 20 25 25 N 1.28593 * 109.67320 * 179.82164 * 24 23 21 26 26 C 1.30515 * 109.67462 * 0.44842 * 25 24 23 27 27 N 1.35494 * 107.30834 * 359.72959 * 26 25 24 28 28 C 1.53002 * 109.46972 * 60.00459 * 21 20 19 29 29 C 1.52997 * 109.46817 * 299.99733 * 28 21 20 30 30 C 1.39215 * 119.99950 * 180.30458 * 8 7 6 31 31 O 1.34350 * 125.66730 * 120.22349 * 4 2 1 32 32 H 0.96698 * 114.00337 * 59.99630 * 1 2 3 33 33 H 1.09001 * 109.47522 * 120.00182 * 2 1 3 34 34 H 1.48495 * 109.99898 * 60.00202 * 3 2 1 35 35 H 1.48506 * 109.99826 * 181.32415 * 3 2 1 36 36 H 1.08007 * 126.47926 * 359.93001 * 5 4 2 37 37 H 1.08003 * 126.63216 * 180.02562 * 6 5 4 38 38 H 1.07995 * 119.88044 * 359.97438 * 9 8 7 39 39 H 1.07995 * 119.88179 * 180.02562 * 10 9 8 40 40 H 0.96704 * 114.00273 * 269.97919 * 12 11 10 41 41 H 0.96998 * 120.00328 * 0.02562 * 16 14 13 42 42 H 1.09002 * 109.46719 * 299.99449 * 19 17 16 43 43 H 1.08993 * 109.47839 * 59.99291 * 19 17 16 44 44 H 1.09001 * 109.47289 * 179.97438 * 20 19 17 45 45 H 1.09000 * 109.47611 * 59.99933 * 20 19 17 46 46 H 1.08005 * 126.34955 * 179.72558 * 26 25 24 47 47 H 0.97003 * 126.98321 * 179.97438 * 27 26 25 48 48 H 1.09002 * 109.47070 * 179.97438 * 28 21 20 49 49 H 1.08996 * 109.47407 * 59.99513 * 28 21 20 50 50 H 1.09001 * 109.47502 * 300.00518 * 29 28 21 51 51 H 1.09001 * 109.47289 * 180.02562 * 29 28 21 52 52 H 1.08002 * 120.12216 * 359.97438 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9312 -0.7103 -1.2305 5 6 1.6772 -1.9926 -1.5559 6 6 2.3342 -2.2467 -2.7769 7 6 2.9589 -1.0930 -3.1330 8 6 3.7750 -0.8878 -4.3483 9 6 3.9578 -1.9379 -5.2530 10 6 4.7172 -1.7521 -6.3879 11 6 5.3066 -0.5214 -6.6408 12 8 6.0527 -0.3437 -7.7596 13 6 5.1307 0.5387 -5.7394 14 6 5.7566 1.8483 -6.0053 15 8 6.4266 2.0097 -7.0071 16 7 5.5856 2.8655 -5.1378 17 6 6.2075 4.1655 -5.4016 18 1 7.1725 4.0152 -5.8854 19 6 5.2999 4.9884 -6.3182 20 6 5.9491 6.3462 -6.5931 21 6 6.1509 7.0918 -5.2725 22 1 5.1857 7.2419 -4.7887 23 6 6.7897 8.4296 -5.5434 24 7 6.5588 9.5415 -4.9001 25 7 7.2799 10.4849 -5.3937 26 6 7.9966 10.0199 -6.3804 27 7 7.7060 8.7022 -6.5036 28 6 7.0584 6.2690 -4.3558 29 6 6.4093 4.9111 -4.0809 30 6 4.3663 0.3493 -4.5890 31 8 2.7103 -0.1713 -2.1831 32 1 -0.3934 0.4417 -0.7650 33 1 1.7924 -0.5139 0.8899 34 1 1.5615 2.4679 1.2085 35 1 3.5346 1.7703 -0.0322 36 1 1.0832 -2.6936 -0.9883 37 1 2.3395 -3.1777 -3.3243 38 1 3.5022 -2.8982 -5.0618 39 1 4.8542 -2.5672 -7.0830 40 1 6.9909 -0.5470 -7.6431 41 1 5.0514 2.7367 -4.3385 42 1 5.1558 4.4570 -7.2589 43 1 4.3349 5.1387 -5.8344 44 1 5.3028 6.9324 -7.2465 45 1 6.9143 6.1963 -7.0769 46 1 8.6923 10.5813 -6.9864 47 1 8.0781 8.0804 -7.1485 48 1 7.2026 6.8004 -3.4151 49 1 8.0236 6.1190 -4.8395 50 1 5.4440 5.0611 -3.5972 51 1 7.0556 4.3250 -3.4275 52 1 4.2298 1.1606 -3.8893 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16624780_13259648.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:34:19 Heat of formation + Delta-G solvation = 9.190924 kcal Electronic energy + Delta-G solvation = -38432.224470 eV Core-core repulsion = 33366.356390 eV Total energy + Delta-G solvation = -5065.868080 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 411.167 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -44.14727 -43.68368 -41.64502 -40.28088 -38.97058 -38.09073 -37.76405 -35.71794 -34.60449 -34.19193 -33.08426 -32.65330 -31.88378 -31.82988 -30.04023 -29.45996 -26.37646 -25.62663 -24.52392 -24.01506 -23.58012 -23.24281 -22.78443 -22.14138 -21.59242 -21.30227 -20.85841 -19.61072 -19.30160 -19.10865 -18.26313 -17.70037 -17.50888 -17.30176 -16.85209 -16.67494 -16.53053 -16.33694 -16.24596 -16.08801 -15.70270 -15.68114 -15.41048 -15.12548 -14.96176 -14.60162 -14.42056 -14.32073 -14.06827 -13.93787 -13.84364 -13.73743 -13.49935 -13.28618 -13.17960 -13.10257 -12.83213 -12.74943 -12.41485 -12.28096 -12.19672 -12.19055 -11.84794 -11.83707 -11.66621 -11.51316 -11.29090 -11.04805 -10.85016 -10.67099 -10.42426 -10.29985 -10.24412 -10.03150 -8.88542 -5.00643 -0.54197 -0.18520 0.78555 0.85911 1.18965 1.45642 1.51274 1.78796 1.84926 1.88919 1.90002 1.93811 2.04370 2.65132 3.13006 3.16506 3.26354 3.40475 3.48763 3.58871 3.65524 3.68606 3.85804 3.92494 3.97918 4.03028 4.07775 4.13572 4.20498 4.23823 4.31506 4.32741 4.33925 4.40506 4.42364 4.43551 4.50854 4.64102 4.66868 4.70091 4.78763 4.81249 4.89574 5.00331 5.01443 5.03770 5.04441 5.08643 5.15460 5.16569 5.22170 5.26860 5.30306 5.45269 5.48308 5.52535 6.00329 6.23530 6.45865 6.63781 6.73904 7.15753 7.70638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.031 4.031 3 Si 0.778 3.222 4 C -0.055 4.055 5 C -0.184 4.184 6 C -0.191 4.191 7 C 0.024 3.976 8 C -0.042 4.042 9 C -0.046 4.046 10 C -0.148 4.148 11 C 0.163 3.837 12 O -0.494 6.494 13 C -0.179 4.179 14 C 0.559 3.441 15 O -0.556 6.556 16 N -0.714 5.714 17 C 0.148 3.852 18 H 0.076 0.924 19 C -0.122 4.122 20 C -0.106 4.106 21 C 0.003 3.997 22 H 0.109 0.891 23 C 0.192 3.808 24 N -0.342 5.342 25 N -0.354 5.354 26 C 0.169 3.831 27 N -0.569 5.569 28 C -0.101 4.101 29 C -0.118 4.118 30 C -0.050 4.050 31 O -0.170 6.170 32 H 0.399 0.601 33 H 0.133 0.867 34 H -0.285 1.285 35 H -0.283 1.283 36 H 0.159 0.841 37 H 0.173 0.827 38 H 0.163 0.837 39 H 0.162 0.838 40 H 0.410 0.590 41 H 0.411 0.589 42 H 0.055 0.945 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.261 0.739 47 H 0.445 0.555 48 H 0.072 0.928 49 H 0.070 0.930 50 H 0.090 0.910 51 H 0.081 0.919 52 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.396 -5.479 -1.513 5.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.141 4.141 3 Si 0.682 3.318 4 C -0.105 4.105 5 C -0.203 4.203 6 C -0.210 4.210 7 C -0.025 4.025 8 C -0.042 4.042 9 C -0.064 4.064 10 C -0.166 4.166 11 C 0.117 3.883 12 O -0.308 6.308 13 C -0.183 4.183 14 C 0.347 3.653 15 O -0.435 6.435 16 N -0.366 5.366 17 C 0.043 3.957 18 H 0.094 0.906 19 C -0.161 4.161 20 C -0.145 4.145 21 C -0.018 4.018 22 H 0.127 0.873 23 C -0.079 4.079 24 N -0.182 5.182 25 N -0.193 5.193 26 C -0.122 4.122 27 N -0.184 5.184 28 C -0.140 4.140 29 C -0.156 4.156 30 C -0.069 4.069 31 O -0.068 6.068 32 H 0.250 0.750 33 H 0.150 0.850 34 H -0.211 1.211 35 H -0.210 1.210 36 H 0.177 0.823 37 H 0.190 0.810 38 H 0.180 0.820 39 H 0.179 0.821 40 H 0.271 0.729 41 H 0.249 0.751 42 H 0.074 0.926 43 H 0.099 0.901 44 H 0.091 0.909 45 H 0.092 0.908 46 H 0.277 0.723 47 H 0.288 0.712 48 H 0.091 0.909 49 H 0.089 0.911 50 H 0.109 0.891 51 H 0.100 0.900 52 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 0.396 -3.482 -0.395 3.526 hybrid contribution 1.047 -1.939 -0.613 2.287 sum 1.443 -5.421 -1.008 5.699 Atomic orbital electron populations 1.86534 1.16061 1.82163 1.50315 1.24502 0.85335 1.11587 0.92648 0.93400 0.78280 0.74920 0.85232 1.23108 0.98976 0.94813 0.93562 1.21771 1.04002 0.96190 0.98339 1.22145 1.01244 0.99483 0.98133 1.20434 1.02846 0.88388 0.90867 1.17690 0.99335 0.95035 0.92142 1.21404 0.94798 0.98942 0.91297 1.21567 0.99682 0.96855 0.98545 1.18879 0.93176 0.91526 0.84730 1.84705 1.24898 1.90592 1.30573 1.20283 1.05368 0.95121 0.97478 1.18194 0.80082 0.84182 0.82850 1.90805 1.40892 1.83777 1.28031 1.45929 1.53665 1.11118 1.25858 1.21027 0.96575 0.81404 0.96648 0.90604 1.21821 0.99696 0.94683 0.99870 1.21525 1.02081 0.95417 0.95491 1.19826 0.99572 0.84491 0.97913 0.87250 1.25198 0.93779 0.98758 0.90132 1.74184 1.21439 0.97276 1.25320 1.74188 1.09124 1.25042 1.10937 1.27289 1.02384 0.83047 0.99457 1.44101 1.33769 1.11560 1.28947 1.21464 0.98275 0.94646 0.99607 1.21762 1.03195 0.94985 0.95695 1.21430 0.93325 0.97216 0.94919 1.83894 1.55264 1.39568 1.28059 0.74997 0.85000 1.21129 1.20983 0.82317 0.80964 0.81969 0.82053 0.72946 0.75144 0.92630 0.90061 0.90864 0.90781 0.72330 0.71159 0.90913 0.91150 0.89113 0.89989 0.83095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 1.58 12.87 -148.98 -1.92 -0.34 16 2 C -0.03 0.10 2.98 71.23 0.21 0.31 16 3 Si 0.78 -3.22 32.10 68.60 2.20 -1.01 16 4 C -0.05 0.06 6.22 24.87 0.15 0.21 16 5 C -0.18 0.14 10.77 22.13 0.24 0.38 16 6 C -0.19 0.39 10.26 22.40 0.23 0.62 16 7 C 0.02 -0.02 7.03 24.27 0.17 0.15 16 8 C -0.04 0.10 5.87 -20.13 -0.12 -0.02 16 9 C -0.05 0.22 9.54 22.55 0.22 0.44 16 10 C -0.15 0.50 9.96 22.30 0.22 0.72 16 11 C 0.16 0.21 6.72 22.89 0.15 0.36 16 12 O -0.49 -1.66 11.55 -68.60 -0.79 -2.45 16 13 C -0.18 -0.16 5.88 -20.04 -0.12 -0.28 16 14 C 0.56 1.74 7.73 86.70 0.67 2.41 16 15 O -0.56 -5.65 14.81 16.98 0.25 -5.39 16 16 N -0.71 2.39 5.03 -445.66 -2.24 0.15 16 17 C 0.15 -0.63 2.46 44.99 0.11 -0.52 16 18 H 0.08 -0.05 7.58 -2.39 -0.02 -0.07 16 19 C -0.12 0.51 5.49 30.59 0.17 0.68 16 20 C -0.11 0.63 4.97 30.59 0.15 0.78 16 21 C 0.00 -0.01 2.66 -11.54 -0.03 -0.04 16 22 H 0.11 -0.40 8.14 -2.39 -0.02 -0.42 16 23 C 0.19 0.31 6.99 137.98 0.96 1.28 16 24 N -0.34 -3.68 12.21 -50.15 -0.61 -4.29 16 25 N -0.35 -3.67 12.21 -59.99 -0.73 -4.41 16 26 C 0.17 -0.08 13.19 180.11 2.37 2.29 16 27 N -0.57 2.15 5.96 -189.86 -1.13 1.02 16 28 C -0.10 0.59 5.19 30.59 0.16 0.74 16 29 C -0.12 0.92 5.39 30.60 0.16 1.09 16 30 C -0.05 0.13 9.20 22.79 0.21 0.34 16 31 O -0.17 0.12 8.78 -6.58 -0.06 0.06 16 32 H 0.40 -4.24 8.70 -74.06 -0.64 -4.88 16 33 H 0.13 -0.46 7.96 -2.39 -0.02 -0.47 16 34 H -0.28 -0.63 7.11 99.48 0.71 0.08 16 35 H -0.28 -0.33 7.11 99.48 0.71 0.37 16 36 H 0.16 -0.38 8.06 -2.91 -0.02 -0.40 16 37 H 0.17 -1.18 7.25 -2.91 -0.02 -1.20 16 38 H 0.16 -1.60 6.96 -2.91 -0.02 -1.62 16 39 H 0.16 -1.15 8.06 -2.91 -0.02 -1.18 16 40 H 0.41 -1.51 9.06 -74.05 -0.67 -2.18 16 41 H 0.41 -3.39 6.63 -92.71 -0.61 -4.00 16 42 H 0.05 0.05 8.14 -2.39 -0.02 0.03 16 43 H 0.08 -0.47 8.14 -2.39 -0.02 -0.49 16 44 H 0.07 -0.36 8.14 -2.39 -0.02 -0.38 16 45 H 0.07 -0.56 7.52 -2.39 -0.02 -0.58 16 46 H 0.26 -2.69 8.06 -2.91 -0.02 -2.71 16 47 H 0.45 -4.88 8.29 -92.71 -0.77 -5.65 16 48 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 49 H 0.07 -0.44 8.14 -2.39 -0.02 -0.46 16 50 H 0.09 -0.91 8.14 -2.39 -0.02 -0.93 16 51 H 0.08 -0.66 8.14 -2.39 -0.02 -0.68 16 52 H 0.15 -1.03 6.24 -2.91 -0.02 -1.05 16 Total: 0.00 -33.52 433.70 -0.35 -33.87 By element: Atomic # 1 Polarization: -27.51 SS G_CDS: -1.62 Total: -29.14 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: 6.30 Total: 11.94 kcal Atomic # 7 Polarization: -2.81 SS G_CDS: -4.72 Total: -7.53 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: -2.52 Total: -8.13 kcal Atomic # 14 Polarization: -3.22 SS G_CDS: 2.20 Total: -1.01 kcal Total: -33.52 -0.35 -33.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16624780_13259648.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.065 kcal (2) G-P(sol) polarization free energy of solvation -33.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds