Wall clock time and date at job start Sun Mar 7 2021 05:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86305 * 109.46962 * 2 1 4 4 C 1.50698 * 109.47058 * 120.00006 * 2 1 3 5 5 C 1.34195 * 126.53712 * 254.97261 * 4 2 1 6 6 N 1.36863 * 109.96381 * 180.02562 * 5 4 2 7 7 C 1.37401 * 109.98272 * 0.02562 * 6 5 4 8 8 C 1.39337 * 133.25779 * 180.02562 * 7 6 5 9 9 C 1.36347 * 120.23770 * 179.97438 * 8 7 6 10 10 C 1.40169 * 120.67199 * 0.02562 * 9 8 7 11 11 C 1.47653 * 119.97351 * 179.97438 * 10 9 8 12 12 O 1.21584 * 119.99755 * 180.02562 * 11 10 9 13 13 N 1.34777 * 120.00070 * 359.97438 * 11 10 9 14 14 C 1.46504 * 119.99637 * 180.02562 * 13 11 10 15 15 H 1.08993 * 109.47378 * 324.99749 * 14 13 11 16 16 C 1.52999 * 109.47050 * 85.00741 * 14 13 11 17 17 C 1.52997 * 109.46991 * 179.97438 * 16 14 13 18 18 C 1.52996 * 109.47131 * 299.99311 * 17 16 14 19 19 H 1.08996 * 109.47452 * 300.00000 * 18 17 16 20 20 C 1.50703 * 109.47130 * 180.02562 * 18 17 16 21 21 N 1.30517 * 126.34751 * 144.69146 * 20 18 17 22 22 N 1.28593 * 109.67320 * 179.82164 * 21 20 18 23 23 C 1.30515 * 109.67462 * 0.44842 * 22 21 20 24 24 N 1.35494 * 107.30834 * 359.72959 * 23 22 21 25 25 C 1.53002 * 109.46972 * 60.00459 * 18 17 16 26 26 C 1.52997 * 109.46817 * 299.99733 * 25 18 17 27 27 C 1.39189 * 120.05278 * 0.24986 * 10 9 8 28 28 C 1.39235 * 119.38976 * 359.45905 * 27 10 9 29 29 H 0.96700 * 114.00444 * 59.99832 * 1 2 3 30 30 H 1.08997 * 109.47254 * 240.00490 * 2 1 3 31 31 H 1.48499 * 109.99808 * 298.68031 * 3 2 1 32 32 H 1.48497 * 110.00058 * 59.99784 * 3 2 1 33 33 H 1.07997 * 125.02032 * 0.02562 * 5 4 2 34 34 H 0.96993 * 125.00930 * 180.02562 * 6 5 4 35 35 H 1.08002 * 119.88103 * 359.94367 * 8 7 6 36 36 H 1.08003 * 119.66324 * 179.97438 * 9 8 7 37 37 H 0.96998 * 120.00328 * 0.02562 * 13 11 10 38 38 H 1.09002 * 109.46719 * 299.99449 * 16 14 13 39 39 H 1.08993 * 109.47839 * 59.99291 * 16 14 13 40 40 H 1.09001 * 109.47289 * 179.97438 * 17 16 14 41 41 H 1.09000 * 109.47611 * 59.99933 * 17 16 14 42 42 H 1.08005 * 126.34955 * 179.72558 * 23 22 21 43 43 H 0.97003 * 126.98321 * 179.97438 * 24 23 22 44 44 H 1.09002 * 109.47070 * 179.97438 * 25 18 17 45 45 H 1.08996 * 109.47407 * 59.99513 * 25 18 17 46 46 H 1.09001 * 109.47502 * 300.00518 * 26 25 18 47 47 H 1.09001 * 109.47289 * 180.02562 * 26 25 18 48 48 H 1.07997 * 120.30286 * 179.70573 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 2.4612 -0.1386 2.3227 6 7 2.8035 -1.1004 3.2343 7 6 2.4963 -2.3455 2.7409 8 6 2.6350 -3.6351 3.2499 9 6 2.2310 -4.7103 2.5152 10 6 1.6724 -4.5368 1.2414 11 6 1.2406 -5.7122 0.4590 12 8 0.7564 -5.5622 -0.6462 13 7 1.3840 -6.9513 0.9694 14 6 0.9560 -8.1174 0.1927 15 1 0.0676 -7.8630 -0.3851 16 6 2.0794 -8.5378 -0.7572 17 6 1.6327 -9.7560 -1.5678 18 6 1.3099 -10.9106 -0.6173 19 1 2.1985 -11.1647 -0.0394 20 6 0.8705 -12.1108 -1.4158 21 7 1.1180 -13.3607 -1.1332 22 7 0.5896 -14.1195 -2.0270 23 6 -0.0109 -13.3876 -2.9255 24 7 0.1502 -12.0920 -2.5633 25 6 0.1866 -10.4904 0.3327 26 6 0.6333 -9.2721 1.1433 27 6 1.5298 -3.2578 0.7111 28 6 1.9359 -2.1577 1.4618 29 1 -0.3934 0.4417 -0.7650 30 1 1.7923 -0.5137 -0.8900 31 1 1.5878 2.4585 -1.2242 32 1 1.5614 2.4679 1.2084 33 1 2.5974 0.9237 2.4620 34 1 3.2039 -0.9285 4.1008 35 1 3.0646 -3.7836 4.2296 36 1 2.3432 -5.7059 2.9186 37 1 1.7706 -7.0710 1.8509 38 1 2.3096 -7.7150 -1.4341 39 1 2.9678 -8.7922 -0.1793 40 1 2.4328 -10.0552 -2.2449 41 1 0.7441 -9.5020 -2.1458 42 1 -0.5384 -13.7480 -3.7963 43 1 -0.1823 -11.3097 -3.0308 44 1 -0.0437 -11.3131 1.0095 45 1 -0.7020 -10.2363 -0.2452 46 1 1.5219 -9.5261 1.7212 47 1 -0.1668 -8.9730 1.8204 48 1 1.1043 -3.1198 -0.2719 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16624780_13287722.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:34:24 Heat of formation + Delta-G solvation = 61.684405 kcal Electronic energy + Delta-G solvation = -31974.858159 eV Core-core repulsion = 27611.430980 eV Total energy + Delta-G solvation = -4363.427178 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.164 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -44.14501 -42.44345 -41.13216 -39.39051 -37.96032 -37.47273 -35.76265 -34.57700 -33.37837 -32.56242 -31.86879 -30.93384 -30.58106 -29.28505 -26.44884 -25.39531 -24.30860 -23.85110 -23.43269 -23.20826 -22.12385 -21.47104 -21.00424 -20.46419 -19.29973 -19.05577 -18.52000 -18.44183 -17.61823 -17.05197 -16.85132 -16.42898 -16.29172 -16.04965 -15.83262 -15.56786 -15.36081 -15.11019 -15.03514 -14.95629 -14.78888 -14.70523 -14.20210 -14.04452 -13.79480 -13.68022 -13.43968 -13.27864 -12.83649 -12.78253 -12.58628 -12.39122 -12.27692 -12.18709 -12.14836 -11.83637 -11.81597 -11.65778 -11.50661 -11.30323 -10.99227 -10.78457 -10.37797 -10.25147 -10.11438 -9.31604 -8.80718 -4.88899 -0.13750 0.22030 0.86019 1.33342 1.48828 1.63431 1.85004 1.86760 1.89498 1.96867 2.09357 2.13436 2.89932 3.17282 3.52626 3.53521 3.65324 3.67527 3.75799 3.82053 3.86660 3.98679 4.03426 4.13964 4.14881 4.22175 4.26869 4.33171 4.34024 4.41024 4.43065 4.44367 4.50758 4.55799 4.61538 4.67596 4.78949 4.81214 5.01060 5.01795 5.02570 5.04857 5.09275 5.16955 5.26950 5.28663 5.31813 5.36829 5.47305 5.54868 5.58030 5.99221 6.23198 6.54595 6.58374 6.63327 7.22102 7.70674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.564 6.564 2 C -0.064 4.064 3 Si 0.783 3.217 4 C -0.182 4.182 5 C 0.078 3.922 6 N -0.572 5.572 7 C 0.110 3.890 8 C -0.126 4.126 9 C -0.066 4.066 10 C -0.179 4.179 11 C 0.563 3.437 12 O -0.586 6.586 13 N -0.708 5.708 14 C 0.145 3.855 15 H 0.070 0.930 16 C -0.122 4.122 17 C -0.107 4.107 18 C 0.004 3.996 19 H 0.110 0.890 20 C 0.191 3.809 21 N -0.341 5.341 22 N -0.354 5.354 23 C 0.168 3.832 24 N -0.570 5.570 25 C -0.102 4.102 26 C -0.116 4.116 27 C -0.021 4.021 28 C -0.129 4.129 29 H 0.390 0.610 30 H 0.071 0.929 31 H -0.293 1.293 32 H -0.279 1.279 33 H 0.204 0.796 34 H 0.439 0.561 35 H 0.162 0.838 36 H 0.163 0.837 37 H 0.415 0.585 38 H 0.053 0.947 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.261 0.739 43 H 0.445 0.555 44 H 0.074 0.926 45 H 0.067 0.933 46 H 0.093 0.907 47 H 0.082 0.918 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.839 5.868 3.490 7.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.373 6.373 2 C -0.171 4.171 3 Si 0.686 3.314 4 C -0.189 4.189 5 C -0.050 4.050 6 N -0.175 5.175 7 C 0.000 4.000 8 C -0.146 4.146 9 C -0.086 4.086 10 C -0.183 4.183 11 C 0.352 3.648 12 O -0.467 6.467 13 N -0.360 5.360 14 C 0.041 3.959 15 H 0.088 0.912 16 C -0.160 4.160 17 C -0.146 4.146 18 C -0.017 4.017 19 H 0.128 0.872 20 C -0.079 4.079 21 N -0.181 5.181 22 N -0.192 5.192 23 C -0.122 4.122 24 N -0.184 5.184 25 C -0.141 4.141 26 C -0.154 4.154 27 C -0.041 4.041 28 C -0.134 4.134 29 H 0.239 0.761 30 H 0.089 0.911 31 H -0.220 1.220 32 H -0.205 1.205 33 H 0.221 0.779 34 H 0.280 0.720 35 H 0.179 0.821 36 H 0.180 0.820 37 H 0.253 0.747 38 H 0.072 0.928 39 H 0.101 0.899 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.277 0.723 43 H 0.288 0.712 44 H 0.092 0.908 45 H 0.086 0.914 46 H 0.111 0.889 47 H 0.101 0.899 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.015 5.126 4.196 7.746 hybrid contribution -1.819 1.183 -1.311 2.535 sum 2.196 6.309 2.884 7.276 Atomic orbital electron populations 1.86586 1.19440 1.80779 1.50516 1.24526 0.83298 1.12286 0.97016 0.94132 0.89695 0.70387 0.77214 1.19817 1.09866 0.91191 0.98039 1.22076 0.99178 0.95546 0.88163 1.41728 1.53968 1.03235 1.18605 1.18672 0.99851 0.87869 0.93585 1.20076 1.04461 0.87903 1.02164 1.20910 0.95753 1.00211 0.91692 1.19613 1.08910 0.92316 0.97476 1.18400 0.77216 0.83972 0.85170 1.90753 1.46847 1.86814 1.22290 1.45818 1.63849 1.04618 1.21709 1.21031 0.97266 0.84656 0.92964 0.91192 1.21818 0.98912 0.96981 0.98310 1.21529 1.02314 0.93257 0.97476 1.19818 1.00316 0.86951 0.94629 0.87156 1.25211 0.96758 0.96980 0.88997 1.74183 1.21727 1.00065 1.22128 1.74186 1.13681 1.28477 1.02903 1.27288 1.02066 0.80193 1.02645 1.44108 1.42342 1.10804 1.21147 1.21473 0.96919 0.97915 0.97764 1.21741 1.03613 0.92542 0.97465 1.20589 0.94386 0.90659 0.98424 1.19194 1.05273 0.93390 0.95511 0.76077 0.91143 1.21977 1.20506 0.77917 0.71988 0.82094 0.81964 0.74670 0.92769 0.89878 0.90819 0.90984 0.72333 0.71200 0.90768 0.91379 0.88879 0.89914 0.87211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -3.50 12.86 -148.98 -1.92 -5.42 16 2 C -0.06 -0.15 3.05 71.24 0.22 0.06 16 3 Si 0.78 -2.33 30.80 68.60 2.11 -0.22 16 4 C -0.18 -0.71 5.61 -18.61 -0.10 -0.82 16 5 C 0.08 -0.18 10.43 82.99 0.87 0.69 16 6 N -0.57 2.45 6.05 -187.47 -1.13 1.32 16 7 C 0.11 0.10 7.27 39.19 0.28 0.39 16 8 C -0.13 0.41 10.00 22.09 0.22 0.63 16 9 C -0.07 0.17 9.46 22.30 0.21 0.38 16 10 C -0.18 -0.88 5.87 -20.09 -0.12 -1.00 16 11 C 0.56 3.65 7.73 86.73 0.67 4.32 16 12 O -0.59 -8.86 15.99 -3.98 -0.06 -8.92 16 13 N -0.71 1.38 5.03 -445.57 -2.24 -0.86 16 14 C 0.15 -0.39 2.46 44.99 0.11 -0.28 16 15 H 0.07 0.14 7.58 -2.39 -0.02 0.12 16 16 C -0.12 0.37 5.49 30.59 0.17 0.54 16 17 C -0.11 0.52 4.97 30.59 0.15 0.67 16 18 C 0.00 -0.01 2.66 -11.54 -0.03 -0.04 16 19 H 0.11 -0.35 8.14 -2.39 -0.02 -0.37 16 20 C 0.19 0.44 6.99 137.98 0.96 1.40 16 21 N -0.34 -3.81 12.21 -50.15 -0.61 -4.43 16 22 N -0.35 -3.82 12.21 -59.99 -0.73 -4.55 16 23 C 0.17 0.02 13.19 180.11 2.37 2.39 16 24 N -0.57 1.71 5.96 -189.86 -1.13 0.58 16 25 C -0.10 0.51 5.19 30.59 0.16 0.66 16 26 C -0.12 0.82 5.39 30.60 0.16 0.99 16 27 C -0.02 -0.19 9.64 22.74 0.22 0.03 16 28 C -0.13 -0.86 6.34 -20.21 -0.13 -0.99 16 29 H 0.39 -0.69 8.74 -74.06 -0.65 -1.34 16 30 H 0.07 0.12 7.96 -2.39 -0.02 0.10 16 31 H -0.29 -0.68 7.11 99.48 0.71 0.03 16 32 H -0.28 -0.27 7.04 99.48 0.70 0.43 16 33 H 0.20 -1.77 6.30 -2.91 -0.02 -1.78 16 34 H 0.44 -5.09 8.96 -92.71 -0.83 -5.92 16 35 H 0.16 -1.62 8.06 -2.91 -0.02 -1.64 16 36 H 0.16 -1.69 6.36 -2.91 -0.02 -1.70 16 37 H 0.41 -3.51 6.60 -92.71 -0.61 -4.12 16 38 H 0.05 0.12 8.14 -2.39 -0.02 0.10 16 39 H 0.08 -0.43 8.14 -2.39 -0.02 -0.45 16 40 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 41 H 0.07 -0.44 7.52 -2.39 -0.02 -0.46 16 42 H 0.26 -2.54 8.06 -2.91 -0.02 -2.57 16 43 H 0.44 -4.45 8.29 -92.71 -0.77 -5.22 16 44 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 45 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 46 H 0.09 -0.92 8.14 -2.39 -0.02 -0.94 16 47 H 0.08 -0.61 8.14 -2.39 -0.02 -0.63 16 48 H 0.11 1.43 7.64 -2.91 -0.02 1.40 16 Total: 0.00 -37.29 394.21 -1.08 -38.37 By element: Atomic # 1 Polarization: -24.12 SS G_CDS: -1.77 Total: -25.89 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: 6.40 Total: 10.01 kcal Atomic # 7 Polarization: -2.09 SS G_CDS: -5.85 Total: -7.94 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: -1.98 Total: -14.34 kcal Atomic # 14 Polarization: -2.33 SS G_CDS: 2.11 Total: -0.22 kcal Total: -37.29 -1.08 -38.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16624780_13287722.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.055 kcal (2) G-P(sol) polarization free energy of solvation -37.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds