Wall clock time and date at job start Sun Mar 7 2021 05:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50707 * 109.46442 * 119.99698 * 2 1 3 5 5 C 1.38584 * 120.32521 * 64.72316 * 4 2 1 6 6 C 1.38628 * 118.48715 * 179.75779 * 5 4 2 7 7 C 1.39270 * 119.05898 * 0.53180 * 6 5 4 8 8 C 1.48168 * 119.72113 * 179.72515 * 7 6 5 9 9 O 1.21517 * 120.00120 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00013 * 179.97438 * 8 7 6 11 11 C 1.46504 * 120.00210 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.47164 * 35.00146 * 11 10 8 13 13 C 1.53002 * 109.47169 * 155.00016 * 11 10 8 14 14 C 1.52998 * 109.47054 * 180.02562 * 13 11 10 15 15 C 1.53007 * 109.47159 * 300.00545 * 14 13 11 16 16 H 1.09006 * 109.46822 * 299.99265 * 15 14 13 17 17 C 1.50698 * 109.47000 * 180.02562 * 15 14 13 18 18 N 1.30518 * 126.35384 * 95.02292 * 17 15 14 19 19 N 1.28589 * 109.67593 * 179.97438 * 18 17 15 20 20 C 1.30519 * 109.67442 * 0.02562 * 19 18 17 21 21 N 1.35491 * 107.30744 * 359.76672 * 20 19 18 22 22 C 1.52990 * 109.47439 * 59.99535 * 15 14 13 23 23 C 1.52998 * 109.47325 * 300.00364 * 22 15 14 24 24 N 1.32742 * 120.55619 * 359.71139 * 7 6 5 25 25 C 1.31497 * 121.64360 * 0.02562 * 24 7 6 26 26 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 27 27 H 1.08999 * 109.47293 * 239.99660 * 2 1 3 28 28 H 1.48501 * 109.99918 * 178.67685 * 3 2 1 29 29 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 30 30 H 1.08003 * 120.75280 * 0.02562 * 5 4 2 31 31 H 1.08001 * 120.47247 * 180.24167 * 6 5 4 32 32 H 0.96999 * 120.00312 * 0.02562 * 10 8 7 33 33 H 1.08994 * 109.47165 * 299.99867 * 13 11 10 34 34 H 1.09006 * 109.46937 * 60.00403 * 13 11 10 35 35 H 1.08999 * 109.46955 * 59.99686 * 14 13 11 36 36 H 1.08998 * 109.47473 * 180.02562 * 14 13 11 37 37 H 1.08003 * 126.34554 * 180.02562 * 20 19 18 38 38 H 0.96994 * 126.98585 * 180.22589 * 21 20 19 39 39 H 1.08999 * 109.47368 * 60.00435 * 22 15 14 40 40 H 1.09002 * 109.47556 * 180.02562 * 22 15 14 41 41 H 1.08999 * 109.47250 * 299.99862 * 23 22 15 42 42 H 1.09001 * 109.46979 * 179.97438 * 23 22 15 43 43 H 1.07998 * 119.54650 * 180.02562 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 1.2306 5 6 1.6828 -2.0621 1.4086 6 6 2.1668 -2.6784 2.5521 7 6 2.8723 -1.9194 3.4826 8 6 3.3908 -2.5618 4.7130 9 8 3.1996 -3.7460 4.9070 10 7 4.0747 -1.8327 5.6169 11 6 4.5880 -2.4680 6.8332 12 1 4.8960 -3.4890 6.6076 13 6 5.7891 -1.6763 7.3542 14 6 6.3255 -2.3401 8.6240 15 6 5.2283 -2.3629 9.6901 16 1 4.9202 -1.3420 9.9163 17 6 5.7568 -3.0162 10.9411 18 7 6.2686 -2.4064 11.9754 19 7 6.6157 -3.2722 12.8604 20 6 6.3418 -4.4738 12.4308 21 7 5.7844 -4.3454 11.2026 22 6 4.0272 -3.1545 9.1691 23 6 3.4908 -2.4907 7.8993 24 7 3.0842 -0.6253 3.2764 25 6 2.6409 -0.0169 2.1982 26 1 -0.3934 0.4418 0.7650 27 1 1.7924 -0.5139 -0.8899 28 1 3.5346 1.7702 0.0322 29 1 1.5616 2.4678 -1.2086 30 1 1.1285 -2.6236 0.6710 31 1 1.9951 -3.7312 2.7214 32 1 4.2271 -0.8874 5.4623 33 1 6.5709 -1.6606 6.5949 34 1 5.4811 -0.6553 7.5798 35 1 6.6335 -3.3610 8.3980 36 1 7.1809 -1.7759 8.9955 37 1 6.5218 -5.3988 12.9586 38 1 5.4706 -5.0600 10.6266 39 1 4.3352 -4.1753 8.9431 40 1 3.2453 -3.1703 9.9285 41 1 3.1827 -1.4698 8.1253 42 1 2.6354 -3.0549 7.5279 43 1 2.8332 1.0374 2.0646 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16624780_13287726.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:34:29 Heat of formation + Delta-G solvation = 39.024717 kcal Electronic energy + Delta-G solvation = -27160.922607 eV Core-core repulsion = 23208.502730 eV Total energy + Delta-G solvation = -3952.419876 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.14180 -41.92259 -40.70734 -39.23711 -37.85341 -35.82233 -34.60532 -33.85313 -33.01772 -32.25936 -31.88207 -29.74004 -27.68177 -25.09530 -24.85059 -24.15436 -23.63034 -23.16687 -22.18978 -21.64419 -21.02658 -19.32033 -19.18593 -18.58762 -17.85568 -17.00348 -16.87063 -16.68410 -16.56537 -16.36179 -16.18866 -16.00166 -15.75840 -15.22460 -15.20717 -14.85142 -14.49870 -14.34497 -14.31751 -14.04094 -13.68775 -13.55049 -13.28380 -12.84496 -12.54369 -12.43031 -12.30275 -12.19697 -12.17756 -11.83095 -11.67814 -11.51699 -11.46888 -11.24017 -11.05812 -10.67443 -10.56746 -10.34742 -10.24168 -10.06312 -5.00370 -0.59584 0.07686 0.86473 1.25246 1.54304 1.64801 1.85509 1.88764 1.96055 1.98594 2.66961 2.93999 3.17879 3.43531 3.51958 3.53626 3.65592 3.69304 3.79114 3.85178 3.94916 3.98914 4.11783 4.14157 4.21296 4.31663 4.32372 4.40821 4.40981 4.43900 4.50734 4.58036 4.65699 4.77742 4.87168 4.98817 5.01073 5.01360 5.04429 5.08788 5.16382 5.25818 5.28681 5.37604 5.45520 6.24465 6.28916 6.61888 6.71863 7.05662 7.71340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.069 4.069 3 Si 0.774 3.226 4 C -0.144 4.144 5 C -0.055 4.055 6 C -0.117 4.117 7 C 0.063 3.937 8 C 0.570 3.430 9 O -0.564 6.564 10 N -0.696 5.696 11 C 0.143 3.857 12 H 0.078 0.922 13 C -0.117 4.117 14 C -0.100 4.100 15 C 0.002 3.998 16 H 0.108 0.892 17 C 0.192 3.808 18 N -0.343 5.343 19 N -0.354 5.354 20 C 0.169 3.831 21 N -0.569 5.569 22 C -0.106 4.106 23 C -0.122 4.122 24 N -0.458 5.458 25 C 0.103 3.897 26 H 0.398 0.602 27 H 0.118 0.882 28 H -0.279 1.279 29 H -0.297 1.297 30 H 0.159 0.841 31 H 0.149 0.851 32 H 0.420 0.580 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.261 0.739 38 H 0.445 0.555 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.058 0.942 43 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.298 0.300 -3.315 4.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.180 4.180 3 Si 0.679 3.321 4 C -0.146 4.146 5 C -0.080 4.080 6 C -0.138 4.138 7 C -0.074 4.074 8 C 0.356 3.644 9 O -0.443 6.443 10 N -0.346 5.346 11 C 0.039 3.961 12 H 0.096 0.904 13 C -0.155 4.155 14 C -0.140 4.140 15 C -0.018 4.018 16 H 0.126 0.874 17 C -0.079 4.079 18 N -0.182 5.182 19 N -0.193 5.193 20 C -0.122 4.122 21 N -0.183 5.183 22 C -0.145 4.145 23 C -0.160 4.160 24 N -0.169 5.169 25 C -0.057 4.057 26 H 0.248 0.752 27 H 0.136 0.864 28 H -0.206 1.206 29 H -0.225 1.225 30 H 0.176 0.824 31 H 0.166 0.834 32 H 0.257 0.743 33 H 0.099 0.901 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.277 0.723 38 H 0.289 0.711 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.077 0.923 43 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -0.827 1.412 -2.411 2.913 hybrid contribution -0.849 -2.253 -1.859 3.042 sum -1.676 -0.842 -4.270 4.664 Atomic orbital electron populations 1.86514 1.16678 1.82109 1.50603 1.25159 0.85604 1.10938 0.96262 0.93810 0.78129 0.74561 0.85601 1.21764 0.98883 0.95631 0.98340 1.21731 0.95610 0.94204 0.96488 1.22281 0.95734 1.02268 0.93495 1.21127 0.99520 0.90871 0.95869 1.18045 0.78101 0.85627 0.82666 1.90784 1.59282 1.16248 1.77986 1.45870 1.54251 1.14280 1.20201 1.21134 0.93930 0.97863 0.83183 0.90370 1.21736 0.96465 1.00188 0.97068 1.21468 0.97067 1.02146 0.93280 1.19824 0.95500 1.00139 0.86382 0.87360 1.25185 1.01594 0.81886 0.99202 1.74184 1.16906 1.26933 1.00214 1.74189 1.21820 0.99009 1.24293 1.27292 0.97982 1.01336 0.85551 1.44093 1.47650 1.09216 1.17377 1.21529 0.96435 0.99375 0.97157 1.21820 0.97868 1.02229 0.94097 1.67509 1.18403 1.09015 1.21989 1.23016 0.93579 1.00762 0.88311 0.75216 0.86449 1.20595 1.22502 0.82373 0.83369 0.74261 0.90054 0.89316 0.91031 0.90885 0.72307 0.71132 0.90590 0.90698 0.90199 0.92273 0.79516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 2.50 12.84 -148.98 -1.91 0.59 16 2 C -0.07 0.39 2.82 71.24 0.20 0.59 16 3 Si 0.77 -5.27 29.83 68.60 2.05 -3.22 16 4 C -0.14 0.60 5.37 -19.69 -0.11 0.50 16 5 C -0.05 0.13 9.83 22.45 0.22 0.35 16 6 C -0.12 -0.10 9.63 22.61 0.22 0.12 16 7 C 0.06 0.14 6.75 41.89 0.28 0.42 16 8 C 0.57 2.34 7.78 86.88 0.68 3.01 16 9 O -0.56 -5.70 15.99 -3.77 -0.06 -5.76 16 10 N -0.70 1.06 5.07 -445.09 -2.26 -1.20 16 11 C 0.14 -0.51 2.45 44.99 0.11 -0.40 16 12 H 0.08 -0.03 7.58 -2.39 -0.02 -0.05 16 13 C -0.12 0.80 5.39 30.59 0.16 0.97 16 14 C -0.10 0.55 5.19 30.60 0.16 0.70 16 15 C 0.00 -0.01 2.66 -11.54 -0.03 -0.04 16 16 H 0.11 -0.35 8.14 -2.38 -0.02 -0.37 16 17 C 0.19 0.32 6.99 137.98 0.96 1.28 16 18 N -0.34 -3.71 12.21 -50.15 -0.61 -4.32 16 19 N -0.35 -3.67 12.21 -59.99 -0.73 -4.41 16 20 C 0.17 -0.10 13.19 180.11 2.37 2.28 16 21 N -0.57 2.22 5.96 -189.86 -1.13 1.09 16 22 C -0.11 0.65 4.97 30.59 0.15 0.80 16 23 C -0.12 0.51 5.50 30.59 0.17 0.67 16 24 N -0.46 0.19 9.54 -184.91 -1.76 -1.57 16 25 C 0.10 -0.43 9.84 84.83 0.83 0.41 16 26 H 0.40 -4.95 8.70 -74.06 -0.64 -5.59 16 27 H 0.12 -0.59 7.96 -2.39 -0.02 -0.61 16 28 H -0.28 0.61 7.11 99.48 0.71 1.32 16 29 H -0.30 -0.44 7.11 99.48 0.71 0.27 16 30 H 0.16 -0.82 8.06 -2.91 -0.02 -0.84 16 31 H 0.15 0.15 7.64 -2.91 -0.02 0.13 16 32 H 0.42 -1.88 7.93 -92.71 -0.74 -2.62 16 33 H 0.08 -0.56 8.14 -2.39 -0.02 -0.58 16 34 H 0.09 -0.76 8.14 -2.38 -0.02 -0.78 16 35 H 0.07 -0.43 8.14 -2.39 -0.02 -0.45 16 36 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 37 H 0.26 -2.72 8.06 -2.91 -0.02 -2.75 16 38 H 0.45 -5.00 8.28 -92.71 -0.77 -5.77 16 39 H 0.08 -0.61 7.52 -2.39 -0.02 -0.63 16 40 H 0.07 -0.41 8.14 -2.39 -0.02 -0.43 16 41 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 42 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 43 H 0.19 -1.84 4.92 -2.91 -0.01 -1.86 16 Total: 0.00 -28.37 357.98 -1.06 -29.43 By element: Atomic # 1 Polarization: -21.28 SS G_CDS: -1.03 Total: -22.31 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: 6.39 Total: 11.67 kcal Atomic # 7 Polarization: -3.91 SS G_CDS: -6.50 Total: -10.41 kcal Atomic # 8 Polarization: -3.20 SS G_CDS: -1.97 Total: -5.17 kcal Atomic # 14 Polarization: -5.27 SS G_CDS: 2.05 Total: -3.22 kcal Total: -28.37 -1.06 -29.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16624780_13287726.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.459 kcal (2) G-P(sol) polarization free energy of solvation -28.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds