Wall clock time and date at job start Sun Mar 7 2021 05:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42909 * 1 3 3 Si 1.86305 * 109.46795 * 2 1 4 4 C 1.50698 * 109.47045 * 240.00067 * 2 1 3 5 5 C 1.38309 * 120.34536 * 119.99856 * 4 2 1 6 6 N 1.31954 * 121.07843 * 180.02562 * 5 4 2 7 7 C 1.31663 * 121.88353 * 359.97438 * 6 5 4 8 8 C 1.39564 * 120.56609 * 359.97438 * 7 6 5 9 9 C 1.47837 * 120.56489 * 180.02562 * 8 7 6 10 10 O 1.21554 * 120.00117 * 179.97438 * 9 8 7 11 11 N 1.34773 * 119.99745 * 0.02562 * 9 8 7 12 12 C 1.46504 * 120.00111 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.46891 * 325.00262 * 12 11 9 14 14 C 1.53006 * 109.46883 * 84.99828 * 12 11 9 15 15 C 1.52997 * 109.47127 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.47060 * 300.00449 * 15 14 12 17 17 H 1.09001 * 109.47194 * 299.99650 * 16 15 14 18 18 C 1.50706 * 109.46735 * 180.02562 * 16 15 14 19 19 N 1.30518 * 126.34575 * 95.02454 * 18 16 15 20 20 N 1.28601 * 109.66755 * 179.97438 * 19 18 16 21 21 C 1.30512 * 109.67647 * 359.97438 * 20 19 18 22 22 N 1.35496 * 126.34170 * 274.70455 * 18 16 15 23 23 C 1.52996 * 109.47328 * 60.00126 * 16 15 14 24 24 C 1.52997 * 109.47417 * 204.99914 * 12 11 9 25 25 C 1.38396 * 120.34728 * 300.25577 * 4 2 1 26 26 H 0.96700 * 114.00103 * 300.00005 * 1 2 3 27 27 H 1.08994 * 109.47077 * 119.99919 * 2 1 3 28 28 H 1.48502 * 109.99934 * 299.99811 * 3 2 1 29 29 H 1.48494 * 110.00037 * 61.32108 * 3 2 1 30 30 H 1.07998 * 119.46237 * 0.02562 * 5 4 2 31 31 H 1.08005 * 119.72244 * 179.97438 * 7 6 5 32 32 H 0.97003 * 120.00265 * 359.97438 * 11 9 8 33 33 H 1.08998 * 109.46505 * 59.99948 * 14 12 11 34 34 H 1.08996 * 109.46884 * 300.00829 * 14 12 11 35 35 H 1.09002 * 109.47153 * 180.02562 * 15 14 12 36 36 H 1.09001 * 109.46832 * 60.00321 * 15 14 12 37 37 H 1.08003 * 126.34768 * 179.97438 * 21 20 19 38 38 H 0.97003 * 126.98054 * 0.04658 * 22 18 16 39 39 H 1.08992 * 109.47554 * 59.99639 * 23 16 15 40 40 H 1.09004 * 109.47108 * 179.97438 * 23 16 15 41 41 H 1.09002 * 109.47045 * 60.00127 * 24 12 11 42 42 H 1.09001 * 109.47375 * 300.00052 * 24 12 11 43 43 H 1.07999 * 120.85793 * 0.02562 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 2.7270 -0.0451 -2.1456 6 7 3.1743 -0.6529 -3.2280 7 6 2.8881 -1.9116 -3.4873 8 6 2.0919 -2.6530 -2.6131 9 6 1.7710 -4.0665 -2.9041 10 8 1.0770 -4.7029 -2.1353 11 7 2.2488 -4.6498 -4.0211 12 6 1.9313 -6.0507 -4.3092 13 1 1.8841 -6.6119 -3.3760 14 6 0.5796 -6.1312 -5.0216 15 6 0.2477 -7.5942 -5.3219 16 6 1.3338 -8.1896 -6.2201 17 1 1.3812 -7.6288 -7.1536 18 6 1.0065 -9.6305 -6.5164 19 7 0.3764 -10.0803 -7.5672 20 7 0.2715 -11.3600 -7.4941 21 6 0.8303 -11.7846 -6.3937 22 7 1.3170 -10.6997 -5.7441 23 6 2.6854 -8.1092 -5.5077 24 6 3.0175 -6.6455 -5.2077 25 6 1.5971 -2.0337 -1.4593 26 1 -0.3933 0.4417 0.7650 27 1 1.7924 -0.5138 0.8899 28 1 1.5615 2.4679 -1.2085 29 1 1.5879 2.4586 1.2242 30 1 2.9863 0.9887 -1.9714 31 1 3.2726 -2.3744 -4.3842 32 1 2.8029 -4.1421 -4.6344 33 1 0.6269 -5.5699 -5.9548 34 1 -0.1942 -5.7073 -4.3816 35 1 -0.7151 -7.6515 -5.8299 36 1 0.2003 -8.1550 -4.3885 37 1 0.8955 -12.8109 -6.0636 38 1 1.7899 -10.6901 -4.8972 39 1 2.6381 -8.6699 -4.5742 40 1 3.4592 -8.5338 -6.1474 41 1 3.9804 -6.5882 -4.7001 42 1 3.0647 -6.0844 -6.1409 43 1 0.9738 -2.5759 -0.7636 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16624780_13287814.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:34:46 Heat of formation + Delta-G solvation = 39.983283 kcal Electronic energy + Delta-G solvation = -27242.852130 eV Core-core repulsion = 23290.473821 eV Total energy + Delta-G solvation = -3952.378310 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.14741 -41.93894 -40.70844 -39.22321 -38.02297 -35.86675 -34.62681 -33.86911 -33.48507 -32.12177 -31.87128 -29.62328 -27.29741 -26.04676 -24.49953 -23.90521 -23.75772 -23.25462 -22.13391 -21.56155 -20.89579 -19.30672 -18.99585 -18.72114 -18.09153 -17.92480 -16.96599 -16.89018 -16.41264 -16.37401 -16.19079 -15.87804 -15.55381 -15.19109 -15.16105 -14.91583 -14.65079 -14.29755 -14.14433 -14.06329 -13.85424 -13.66801 -13.28590 -12.84287 -12.70818 -12.44966 -12.31407 -12.20233 -12.13642 -11.83387 -11.67258 -11.51615 -11.38499 -11.28397 -11.10210 -10.74483 -10.55400 -10.30491 -10.25098 -10.09399 -4.96283 -0.57196 -0.02176 0.85764 1.21250 1.58176 1.65631 1.84828 1.88036 1.91748 1.97364 2.60533 3.07376 3.16489 3.24857 3.55497 3.57379 3.62065 3.66327 3.69908 3.76414 3.89573 3.98197 4.09837 4.14645 4.20520 4.22908 4.29645 4.34236 4.40405 4.43205 4.48280 4.51052 4.64810 4.79481 4.83327 4.91809 5.00863 5.01564 5.03994 5.09173 5.15824 5.25830 5.27510 5.31884 5.44331 6.25079 6.38271 6.51157 6.65125 7.05439 7.70765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.086 4.086 3 Si 0.770 3.230 4 C -0.139 4.139 5 C 0.127 3.873 6 N -0.493 5.493 7 C 0.146 3.854 8 C -0.198 4.198 9 C 0.567 3.433 10 O -0.573 6.573 11 N -0.704 5.704 12 C 0.146 3.854 13 H 0.077 0.923 14 C -0.124 4.124 15 C -0.101 4.101 16 C 0.003 3.997 17 H 0.109 0.891 18 C 0.192 3.808 19 N -0.345 5.345 20 N -0.356 5.356 21 C 0.169 3.831 22 N -0.568 5.568 23 C -0.108 4.108 24 C -0.116 4.116 25 C -0.004 4.004 26 H 0.399 0.601 27 H 0.102 0.898 28 H -0.292 1.292 29 H -0.281 1.281 30 H 0.181 0.819 31 H 0.196 0.804 32 H 0.416 0.584 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.262 0.738 38 H 0.446 0.554 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.515 1.497 4.656 9.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.194 4.194 3 Si 0.674 3.326 4 C -0.141 4.141 5 C -0.028 4.028 6 N -0.201 5.201 7 C -0.012 4.012 8 C -0.203 4.203 9 C 0.354 3.646 10 O -0.453 6.453 11 N -0.356 5.356 12 C 0.042 3.958 13 H 0.095 0.905 14 C -0.162 4.162 15 C -0.140 4.140 16 C -0.018 4.018 17 H 0.127 0.873 18 C -0.079 4.079 19 N -0.185 5.185 20 N -0.194 5.194 21 C -0.121 4.121 22 N -0.182 5.182 23 C -0.147 4.147 24 C -0.154 4.154 25 C -0.030 4.030 26 H 0.250 0.750 27 H 0.120 0.880 28 H -0.219 1.219 29 H -0.207 1.207 30 H 0.197 0.803 31 H 0.213 0.787 32 H 0.255 0.745 33 H 0.100 0.900 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.277 0.723 38 H 0.290 0.710 39 H 0.096 0.904 40 H 0.104 0.896 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 7.628 1.959 2.566 8.283 hybrid contribution -1.203 -0.622 2.498 2.841 sum 6.425 1.337 5.063 8.289 Atomic orbital electron populations 1.86540 1.18296 1.80891 1.51315 1.25001 0.84337 1.12442 0.97637 0.94202 0.89901 0.71247 0.77276 1.20480 1.00631 0.94564 0.98428 1.23136 0.91443 1.00311 0.87938 1.67810 1.22280 1.10806 1.19162 1.23506 0.90791 0.89170 0.97774 1.21040 1.04741 0.95477 0.99051 1.18135 0.79079 0.86029 0.81373 1.90793 1.39599 1.65413 1.49481 1.45838 1.52849 1.13583 1.23329 1.21088 0.94806 0.80856 0.99092 0.90509 1.21853 0.97009 0.96200 1.01165 1.21442 0.97821 0.95601 0.99119 1.19836 0.96518 0.84063 1.01398 0.87320 1.25210 0.99320 0.93646 0.89743 1.74190 1.19205 1.03725 1.21371 1.74188 1.21678 1.04029 1.19550 1.27299 0.97209 0.96606 0.91017 1.44073 1.45195 1.06295 1.22664 1.21580 0.94703 0.97457 1.00944 1.21757 0.97953 0.95246 1.00473 1.21643 0.92844 0.93688 0.94853 0.74992 0.88040 1.21905 1.20715 0.80271 0.78713 0.74509 0.89989 0.93199 0.92178 0.91513 0.72266 0.71029 0.90386 0.89601 0.88979 0.88990 0.84556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.67 12.75 -148.98 -1.90 -2.57 16 2 C -0.09 0.20 2.83 71.24 0.20 0.40 16 3 Si 0.77 -3.68 29.82 68.60 2.05 -1.64 16 4 C -0.14 -0.14 5.43 -19.81 -0.11 -0.25 16 5 C 0.13 -0.03 9.84 84.69 0.83 0.81 16 6 N -0.49 -0.43 10.35 -194.75 -2.01 -2.44 16 7 C 0.15 -0.36 10.71 85.04 0.91 0.55 16 8 C -0.20 -0.28 5.89 -19.99 -0.12 -0.40 16 9 C 0.57 1.55 7.75 86.78 0.67 2.22 16 10 O -0.57 -6.45 16.08 -3.88 -0.06 -6.51 16 11 N -0.70 3.62 5.03 -445.40 -2.24 1.38 16 12 C 0.15 -0.79 2.45 44.99 0.11 -0.68 16 13 H 0.08 -0.12 7.58 -2.39 -0.02 -0.14 16 14 C -0.12 0.37 5.49 30.60 0.17 0.54 16 15 C -0.10 0.28 5.19 30.59 0.16 0.44 16 16 C 0.00 -0.01 2.66 -11.54 -0.03 -0.04 16 17 H 0.11 -0.43 8.14 -2.39 -0.02 -0.45 16 18 C 0.19 0.27 6.99 137.98 0.96 1.24 16 19 N -0.35 -3.82 12.21 -50.15 -0.61 -4.43 16 20 N -0.36 -3.73 12.21 -59.99 -0.73 -4.47 16 21 C 0.17 -0.13 13.19 180.11 2.37 2.24 16 22 N -0.57 2.57 5.96 -189.85 -1.13 1.44 16 23 C -0.11 1.10 4.97 30.61 0.15 1.25 16 24 C -0.12 1.30 5.39 30.61 0.17 1.46 16 25 C 0.00 -0.01 9.31 22.73 0.21 0.20 16 26 H 0.40 -2.79 8.74 -74.06 -0.65 -3.44 16 27 H 0.10 -0.64 7.96 -2.39 -0.02 -0.66 16 28 H -0.29 -0.64 7.11 99.48 0.71 0.06 16 29 H -0.28 0.15 7.11 99.48 0.71 0.86 16 30 H 0.18 -0.88 4.88 -2.91 -0.01 -0.90 16 31 H 0.20 -2.10 6.42 -2.91 -0.02 -2.12 16 32 H 0.42 -4.85 6.67 -92.71 -0.62 -5.47 16 33 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 34 H 0.05 0.14 8.14 -2.39 -0.02 0.12 16 35 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 36 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 37 H 0.26 -2.80 8.06 -2.91 -0.02 -2.83 16 38 H 0.45 -5.53 8.28 -92.71 -0.77 -6.30 16 39 H 0.08 -0.95 7.52 -2.39 -0.02 -0.97 16 40 H 0.09 -0.91 8.14 -2.38 -0.02 -0.93 16 41 H 0.09 -1.17 8.14 -2.39 -0.02 -1.19 16 42 H 0.09 -1.21 8.14 -2.39 -0.02 -1.23 16 43 H 0.14 0.82 7.74 -2.91 -0.02 0.80 16 Total: 0.00 -33.72 355.69 -0.89 -34.61 By element: Atomic # 1 Polarization: -24.44 SS G_CDS: -0.91 Total: -25.35 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: 6.67 Total: 9.98 kcal Atomic # 7 Polarization: -1.79 SS G_CDS: -6.73 Total: -8.53 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: -1.96 Total: -9.08 kcal Atomic # 14 Polarization: -3.68 SS G_CDS: 2.05 Total: -1.64 kcal Total: -33.72 -0.89 -34.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16624780_13287814.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.589 kcal (2) G-P(sol) polarization free energy of solvation -33.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds