Wall clock time and date at job start Sun Mar 7 2021 05:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86301 * 109.46962 * 2 1 4 4 C 1.50701 * 109.47363 * 239.99742 * 2 1 3 5 5 C 1.33735 * 125.11793 * 300.00128 * 4 2 1 6 6 C 1.37805 * 115.07897 * 179.97438 * 5 4 2 7 7 C 1.34983 * 114.70040 * 359.97438 * 6 5 4 8 8 C 1.47561 * 125.27198 * 179.97438 * 7 6 5 9 9 C 1.39823 * 120.00159 * 359.72875 * 8 7 6 10 10 C 1.36556 * 119.99732 * 179.71884 * 9 8 7 11 11 C 1.39830 * 120.00118 * 0.55638 * 10 9 8 12 12 C 1.47563 * 120.00231 * 179.74127 * 11 10 9 13 13 O 1.21593 * 119.99717 * 179.97438 * 12 11 10 14 14 N 1.34779 * 119.99845 * 359.97407 * 12 11 10 15 15 C 1.46498 * 119.99796 * 179.97438 * 14 12 11 16 16 H 1.08998 * 109.47362 * 325.00349 * 15 14 12 17 17 C 1.53004 * 109.46876 * 85.00215 * 15 14 12 18 18 C 1.53004 * 109.46742 * 180.02562 * 17 15 14 19 19 C 1.52999 * 109.47069 * 299.99495 * 18 17 15 20 20 H 1.08998 * 109.47444 * 300.00671 * 19 18 17 21 21 C 1.50699 * 109.47326 * 180.02562 * 19 18 17 22 22 N 1.30518 * 126.34643 * 145.02697 * 21 19 18 23 23 N 1.28597 * 109.67562 * 179.97438 * 22 21 19 24 24 C 1.30522 * 109.67163 * 0.02562 * 23 22 21 25 25 N 1.35488 * 126.34511 * 324.71926 * 21 19 18 26 26 C 1.53004 * 109.46926 * 60.00617 * 19 18 17 27 27 C 1.53003 * 109.47056 * 205.00174 * 15 14 12 28 28 C 1.39835 * 119.99676 * 359.71327 * 11 10 9 29 29 C 1.36553 * 119.99923 * 0.02562 * 28 11 10 30 30 S 1.75853 * 125.11658 * 119.99859 * 4 2 1 31 31 H 0.96704 * 114.00031 * 299.99840 * 1 2 3 32 32 H 1.09003 * 109.46966 * 119.99580 * 2 1 3 33 33 H 1.48501 * 110.00053 * 178.67799 * 3 2 1 34 34 H 1.48499 * 109.99815 * 299.99774 * 3 2 1 35 35 H 1.08002 * 122.46183 * 0.02562 * 5 4 2 36 36 H 1.08002 * 122.64687 * 179.72734 * 6 5 4 37 37 H 1.08000 * 119.99569 * 359.97438 * 9 8 7 38 38 H 1.08003 * 119.99703 * 180.25217 * 10 9 8 39 39 H 0.96991 * 120.00075 * 0.02562 * 14 12 11 40 40 H 1.08997 * 109.46875 * 299.99672 * 17 15 14 41 41 H 1.08998 * 109.47015 * 59.99922 * 17 15 14 42 42 H 1.09005 * 109.46723 * 180.02562 * 18 17 15 43 43 H 1.08998 * 109.47535 * 60.00110 * 18 17 15 44 44 H 1.07992 * 126.35096 * 180.02562 * 24 23 22 45 45 H 0.97000 * 126.98289 * 0.03767 * 25 21 19 46 46 H 1.09001 * 109.47322 * 179.97438 * 26 19 18 47 47 H 1.08998 * 109.47015 * 59.99790 * 26 19 18 48 48 H 1.09003 * 109.46851 * 299.99969 * 27 15 14 49 49 H 1.08995 * 109.46913 * 60.00277 * 27 15 14 50 50 H 1.07999 * 119.99958 * 179.97438 * 28 11 10 51 51 H 1.08001 * 120.00237 * 180.02562 * 29 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 1.6722 -1.9847 -1.5427 6 6 2.2374 -2.4241 -2.7203 7 6 2.9660 -1.4967 -3.3767 8 6 3.6712 -1.7149 -4.6544 9 6 3.6186 -2.9656 -5.2773 10 6 4.2664 -3.1658 -6.4626 11 6 4.9920 -2.1234 -7.0476 12 6 5.6967 -2.3414 -8.3256 13 8 6.3273 -1.4347 -8.8345 14 7 5.6415 -3.5454 -8.9288 15 6 6.3407 -3.7616 -10.1979 16 1 6.3042 -2.8491 -10.7929 17 6 7.7992 -4.1313 -9.9200 18 6 8.5296 -4.3565 -11.2454 19 6 7.8529 -5.4934 -12.0139 20 1 7.8893 -6.4061 -11.4192 21 6 8.5726 -5.7156 -13.3191 22 7 8.7564 -6.8619 -13.9157 23 7 9.4094 -6.6813 -15.0087 24 6 9.6724 -5.4117 -15.1588 25 7 9.1438 -4.7619 -14.0937 26 6 6.3944 -5.1237 -12.2918 27 6 5.6637 -4.8987 -10.9658 28 6 5.0492 -0.8742 -6.4218 29 6 4.3970 -0.6725 -5.2392 30 16 2.9467 0.0114 -2.4716 31 1 -0.3933 0.4417 0.7651 32 1 1.7923 -0.5138 0.8901 33 1 3.5346 1.7704 0.0322 34 1 1.5615 2.4678 -1.2085 35 1 1.0639 -2.6224 -0.9184 36 1 2.1107 -3.4321 -3.0868 37 1 3.0622 -3.7721 -4.8230 38 1 4.2224 -4.1307 -6.9458 39 1 5.1382 -4.2685 -8.5231 40 1 8.2814 -3.3212 -9.3729 41 1 7.8356 -5.0438 -9.3249 42 1 9.5685 -4.6203 -11.0474 43 1 8.4931 -3.4438 -11.8401 44 1 10.2074 -4.9618 -15.9819 45 1 9.1711 -3.8080 -13.9197 46 1 5.9123 -5.9334 -12.8396 47 1 6.3579 -4.2109 -12.8864 48 1 5.7003 -5.8112 -10.3708 49 1 4.6248 -4.6353 -11.1638 50 1 5.6099 -0.0692 -6.8734 51 1 4.4408 0.2924 -4.7560 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16624780_13308390.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:34:54 Heat of formation + Delta-G solvation = 64.799931 kcal Electronic energy + Delta-G solvation = -34179.254794 eV Core-core repulsion = 29558.550973 eV Total energy + Delta-G solvation = -4620.703822 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 411.140 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -44.15655 -41.57693 -40.29601 -39.35822 -38.82107 -37.41193 -35.84982 -34.62499 -33.75128 -32.63751 -32.08112 -31.88813 -30.69481 -29.51075 -27.25415 -25.16026 -24.43081 -24.15436 -23.81677 -23.46603 -23.12487 -22.16116 -21.57519 -20.98718 -20.19123 -19.32004 -19.11128 -18.57969 -18.29830 -17.50100 -17.10351 -16.86667 -16.49712 -16.36143 -16.22249 -16.08991 -15.75008 -15.65961 -15.46118 -15.19599 -15.02902 -14.89211 -14.67299 -14.54455 -14.35184 -14.16412 -14.05671 -13.76798 -13.42634 -13.29350 -13.26234 -13.15018 -12.84687 -12.69482 -12.43218 -12.38195 -12.29601 -12.21396 -12.17681 -11.84879 -11.84127 -11.68958 -11.52682 -11.33820 -11.07872 -10.87165 -10.36704 -10.26637 -10.25994 -10.14620 -9.73072 -9.10905 -5.27085 -0.97379 0.16113 0.26812 0.31511 0.67209 0.84884 1.16167 1.46081 1.55240 1.83817 1.87020 1.88056 1.90555 2.01670 2.76640 3.15252 3.31384 3.39902 3.50504 3.63773 3.64795 3.69262 3.76204 3.82083 3.84435 3.96999 4.11015 4.12808 4.19535 4.24281 4.30747 4.31093 4.33663 4.38977 4.42497 4.42971 4.47969 4.50006 4.55389 4.64000 4.77714 4.84859 4.92135 4.98510 4.99407 5.02664 5.03336 5.06775 5.14418 5.15588 5.19521 5.24310 5.25865 5.28263 5.40334 5.44573 5.66456 6.22353 6.44141 6.83379 7.10661 7.69549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.035 4.035 3 Si 0.747 3.253 4 C -0.187 4.187 5 C -0.103 4.103 6 C -0.113 4.113 7 C -0.152 4.152 8 C 0.003 3.997 9 C -0.106 4.106 10 C -0.065 4.065 11 C -0.148 4.148 12 C 0.559 3.441 13 O -0.578 6.578 14 N -0.706 5.706 15 C 0.145 3.855 16 H 0.073 0.927 17 C -0.122 4.122 18 C -0.107 4.107 19 C 0.003 3.997 20 H 0.110 0.890 21 C 0.192 3.808 22 N -0.341 5.341 23 N -0.355 5.355 24 C 0.169 3.831 25 N -0.570 5.570 26 C -0.102 4.102 27 C -0.116 4.116 28 C -0.064 4.064 29 C -0.133 4.133 30 S 0.056 5.944 31 H 0.407 0.593 32 H 0.111 0.889 33 H -0.273 1.273 34 H -0.286 1.286 35 H 0.165 0.835 36 H 0.177 0.823 37 H 0.164 0.836 38 H 0.169 0.831 39 H 0.416 0.584 40 H 0.054 0.946 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.261 0.739 45 H 0.445 0.555 46 H 0.073 0.927 47 H 0.068 0.932 48 H 0.092 0.908 49 H 0.084 0.916 50 H 0.128 0.872 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.776 0.794 6.631 7.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.148 4.148 3 Si 0.652 3.348 4 C -0.303 4.303 5 C -0.133 4.133 6 C -0.143 4.143 7 C -0.268 4.268 8 C 0.001 3.999 9 C -0.125 4.125 10 C -0.083 4.083 11 C -0.152 4.152 12 C 0.348 3.652 13 O -0.459 6.459 14 N -0.358 5.358 15 C 0.040 3.960 16 H 0.091 0.909 17 C -0.161 4.161 18 C -0.146 4.146 19 C -0.018 4.018 20 H 0.128 0.872 21 C -0.079 4.079 22 N -0.181 5.181 23 N -0.193 5.193 24 C -0.121 4.121 25 N -0.184 5.184 26 C -0.141 4.141 27 C -0.154 4.154 28 C -0.083 4.083 29 C -0.152 4.152 30 S 0.322 5.678 31 H 0.259 0.741 32 H 0.129 0.871 33 H -0.200 1.200 34 H -0.213 1.213 35 H 0.183 0.817 36 H 0.194 0.806 37 H 0.182 0.818 38 H 0.186 0.814 39 H 0.254 0.746 40 H 0.073 0.927 41 H 0.101 0.899 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.277 0.723 45 H 0.288 0.712 46 H 0.092 0.908 47 H 0.087 0.913 48 H 0.111 0.889 49 H 0.102 0.898 50 H 0.146 0.854 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.178 1.501 4.779 5.462 hybrid contribution -0.334 0.273 0.265 0.506 sum -2.511 1.774 5.043 5.907 Atomic orbital electron populations 1.86454 1.16554 1.82333 1.51633 1.24020 0.86142 1.09453 0.95234 0.94125 0.78736 0.76391 0.85537 1.24091 1.06680 0.98305 1.01270 1.20294 1.00586 0.94701 0.97722 1.20742 0.97341 1.01452 0.94810 1.23191 1.06913 0.97089 0.99652 1.18481 0.95258 0.94929 0.91273 1.21220 0.99930 0.96014 0.95361 1.21315 0.93522 0.98846 0.94626 1.20070 1.02915 0.95918 0.96279 1.18370 0.79755 0.82642 0.84433 1.90779 1.44514 1.43988 1.66614 1.45851 1.53038 1.12801 1.24124 1.21062 0.91517 0.99345 0.84034 0.90885 1.21828 0.94674 1.02332 0.97266 1.21531 0.99613 0.97403 0.96040 1.19823 0.93685 1.01424 0.86829 0.87215 1.25204 0.99797 0.85041 0.97900 1.74184 1.16808 1.23207 1.03926 1.74193 1.15631 1.16788 1.12721 1.27288 1.00725 0.89633 0.94502 1.44102 1.42896 1.12842 1.18539 1.21486 0.92542 1.02374 0.97693 1.21755 0.99821 0.98261 0.95548 1.20914 0.96597 0.96842 0.93936 1.20972 0.98800 0.99044 0.96409 1.84458 1.50890 1.15649 1.16805 0.74142 0.87105 1.19952 1.21254 0.81714 0.80579 0.81844 0.81374 0.74571 0.92698 0.89909 0.90873 0.90879 0.72343 0.71174 0.90791 0.91286 0.88909 0.89767 0.85359 0.85932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.12 12.83 -148.98 -1.91 -0.79 16 2 C -0.04 0.06 2.95 71.24 0.21 0.27 16 3 Si 0.75 -1.11 30.96 68.60 2.12 1.02 16 4 C -0.19 -0.67 5.76 24.66 0.14 -0.53 16 5 C -0.10 -0.12 10.00 21.14 0.21 0.09 16 6 C -0.11 0.00 9.64 21.42 0.21 0.20 16 7 C -0.15 -0.55 6.37 23.98 0.15 -0.39 16 8 C 0.00 0.01 5.88 -20.05 -0.12 -0.11 16 9 C -0.11 0.34 9.48 22.26 0.21 0.55 16 10 C -0.06 0.29 9.48 22.26 0.21 0.50 16 11 C -0.15 -0.29 5.88 -20.05 -0.12 -0.40 16 12 C 0.56 2.06 7.73 86.70 0.67 2.73 16 13 O -0.58 -7.02 15.99 -4.01 -0.06 -7.08 16 14 N -0.71 2.89 5.03 -445.66 -2.24 0.65 16 15 C 0.14 -0.64 2.45 44.99 0.11 -0.53 16 16 H 0.07 0.00 7.58 -2.39 -0.02 -0.02 16 17 C -0.12 0.53 5.49 30.60 0.17 0.69 16 18 C -0.11 0.62 4.98 30.60 0.15 0.77 16 19 C 0.00 -0.01 2.66 -11.54 -0.03 -0.04 16 20 H 0.11 -0.42 8.14 -2.39 -0.02 -0.44 16 21 C 0.19 0.32 6.98 137.98 0.96 1.28 16 22 N -0.34 -3.66 12.21 -50.16 -0.61 -4.27 16 23 N -0.35 -3.71 12.21 -59.99 -0.73 -4.44 16 24 C 0.17 -0.06 13.19 180.11 2.38 2.32 16 25 N -0.57 2.07 5.96 -189.86 -1.13 0.94 16 26 C -0.10 0.61 5.19 30.61 0.16 0.77 16 27 C -0.12 0.98 5.40 30.61 0.17 1.15 16 28 C -0.06 -0.33 9.53 22.26 0.21 -0.12 16 29 C -0.13 -0.62 9.54 22.26 0.21 -0.41 16 30 S 0.06 0.35 19.46 -56.49 -1.10 -0.75 16 31 H 0.41 -5.15 8.74 -74.05 -0.65 -5.80 16 32 H 0.11 -0.75 7.96 -2.39 -0.02 -0.77 16 33 H -0.27 -1.09 7.11 99.48 0.71 -0.38 16 34 H -0.29 -1.91 7.11 99.48 0.71 -1.21 16 35 H 0.17 -0.43 8.06 -2.91 -0.02 -0.45 16 36 H 0.18 -1.16 6.88 -2.91 -0.02 -1.18 16 37 H 0.16 -1.51 6.74 -2.91 -0.02 -1.53 16 38 H 0.17 -2.12 6.38 -2.91 -0.02 -2.14 16 39 H 0.42 -4.40 6.61 -92.71 -0.61 -5.02 16 40 H 0.05 0.04 8.14 -2.39 -0.02 0.02 16 41 H 0.08 -0.51 8.14 -2.39 -0.02 -0.53 16 42 H 0.07 -0.36 8.14 -2.38 -0.02 -0.38 16 43 H 0.07 -0.53 7.52 -2.39 -0.02 -0.55 16 44 H 0.26 -2.64 8.06 -2.91 -0.02 -2.67 16 45 H 0.45 -4.78 8.29 -92.71 -0.77 -5.55 16 46 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 47 H 0.07 -0.42 8.14 -2.39 -0.02 -0.44 16 48 H 0.09 -1.03 8.14 -2.39 -0.02 -1.05 16 49 H 0.08 -0.75 8.14 -2.39 -0.02 -0.77 16 50 H 0.13 0.85 7.64 -2.91 -0.02 0.83 16 51 H 0.12 0.56 7.26 -2.91 -0.02 0.54 16 Total: 0.00 -35.34 430.30 -0.38 -35.72 By element: Atomic # 1 Polarization: -28.80 SS G_CDS: -0.97 Total: -29.77 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: 6.27 Total: 8.79 kcal Atomic # 7 Polarization: -2.41 SS G_CDS: -4.72 Total: -7.13 kcal Atomic # 8 Polarization: -5.90 SS G_CDS: -1.98 Total: -7.87 kcal Atomic # 14 Polarization: -1.11 SS G_CDS: 2.12 Total: 1.02 kcal Atomic # 16 Polarization: 0.35 SS G_CDS: -1.10 Total: -0.75 kcal Total: -35.34 -0.38 -35.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16624780_13308390.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.520 kcal (2) G-P(sol) polarization free energy of solvation -35.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds