Wall clock time and date at job start Sun Mar 7 2021 05:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86301 * 109.47361 * 2 1 4 4 C 1.50703 * 109.47069 * 120.00062 * 2 1 3 5 5 C 1.38508 * 119.80292 * 244.99817 * 4 2 1 6 6 C 1.37828 * 120.29819 * 180.27880 * 5 4 2 7 7 C 1.39671 * 119.90680 * 359.44526 * 6 5 4 8 8 C 1.47540 * 120.19000 * 180.27370 * 7 6 5 9 9 O 1.21589 * 119.99595 * 180.29510 * 8 7 6 10 10 N 1.34777 * 120.00136 * 0.30378 * 8 7 6 11 11 C 1.46502 * 119.99734 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.47357 * 34.99251 * 11 10 8 13 13 C 1.53004 * 109.46716 * 154.99768 * 11 10 8 14 14 C 1.52995 * 109.46683 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.47440 * 299.99987 * 14 13 11 16 16 H 1.09006 * 109.46462 * 299.99860 * 15 14 13 17 17 C 1.50697 * 109.47244 * 180.02562 * 15 14 13 18 18 N 1.30527 * 126.34423 * 94.68765 * 17 15 14 19 19 N 1.28602 * 109.66746 * 179.81959 * 18 17 15 20 20 C 1.30519 * 109.67514 * 0.45302 * 19 18 17 21 21 N 1.35490 * 126.34833 * 274.99834 * 17 15 14 22 22 C 1.52998 * 109.47157 * 59.99989 * 15 14 13 23 23 C 1.53001 * 109.46633 * 274.99422 * 11 10 8 24 24 C 1.40174 * 119.61760 * 0.57295 * 7 6 5 25 25 O 1.35653 * 120.14934 * 179.67969 * 24 7 6 26 26 C 1.38093 * 119.80534 * 65.01981 * 4 2 1 27 27 H 0.96700 * 113.99545 * 300.00626 * 1 2 3 28 28 H 1.09001 * 109.47203 * 239.99996 * 2 1 3 29 29 H 1.48502 * 109.99629 * 299.99828 * 3 2 1 30 30 H 1.48494 * 110.00079 * 61.32053 * 3 2 1 31 31 H 1.08002 * 119.84813 * 359.97438 * 5 4 2 32 32 H 1.08000 * 120.04778 * 179.72394 * 6 5 4 33 33 H 0.96997 * 119.99972 * 359.97438 * 10 8 7 34 34 H 1.08994 * 109.46755 * 299.99144 * 13 11 10 35 35 H 1.09003 * 109.46927 * 59.99596 * 13 11 10 36 36 H 1.08997 * 109.47563 * 59.99846 * 14 13 11 37 37 H 1.09001 * 109.47077 * 180.02562 * 14 13 11 38 38 H 1.07995 * 126.34477 * 179.72693 * 20 19 18 39 39 H 0.97001 * 126.97781 * 359.97438 * 21 17 15 40 40 H 1.08998 * 109.47372 * 60.00285 * 22 15 14 41 41 H 1.08997 * 109.47020 * 180.02562 * 22 15 14 42 42 H 1.08998 * 109.47110 * 299.99981 * 23 11 10 43 43 H 1.08997 * 109.47692 * 60.00496 * 23 11 10 44 44 H 0.96704 * 114.00377 * 270.01899 * 25 24 7 45 45 H 1.08002 * 119.96291 * 359.97438 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6397 -0.0070 2.1906 6 6 3.1088 -0.6477 3.3171 7 6 2.8594 -2.0100 3.4981 8 6 3.3534 -2.7009 4.7045 9 8 3.1390 -3.8881 4.8559 10 7 4.0423 -2.0159 5.6388 11 6 4.5323 -2.7019 6.8370 12 1 4.8233 -3.7202 6.5793 13 6 5.7431 -1.9511 7.3951 14 6 6.2544 -2.6671 8.6467 15 6 5.1467 -2.7042 9.7016 16 1 4.8559 -1.6856 9.9589 17 6 5.6506 -3.4089 10.9346 18 7 6.1694 -2.8440 11.9908 19 7 6.4865 -3.7451 12.8518 20 6 6.1934 -4.9262 12.3801 21 7 5.6545 -4.7465 11.1500 22 6 3.9359 -3.4549 9.1435 23 6 3.4248 -2.7393 7.8919 24 6 2.1425 -2.7185 2.5239 25 8 1.8998 -4.0433 2.6856 26 6 1.6830 -2.0590 1.3939 27 1 -0.3932 0.4418 0.7650 28 1 1.7923 -0.5138 -0.8900 29 1 1.5616 2.4678 -1.2086 30 1 1.5880 2.4585 1.2242 31 1 2.8296 1.0473 2.0535 32 1 3.6645 -0.0962 4.0610 33 1 4.2136 -1.0689 5.5179 34 1 6.5320 -1.9245 6.6435 35 1 5.4520 -0.9328 7.6527 36 1 6.5453 -3.6856 8.3895 37 1 7.1167 -2.1321 9.0446 38 1 6.3511 -5.8714 12.8780 39 1 5.3359 -5.4357 10.5463 40 1 4.2268 -4.4733 8.8862 41 1 3.1467 -3.4809 9.8947 42 1 3.1338 -1.7210 8.1496 43 1 2.5622 -3.2741 7.4944 44 1 2.5845 -4.6168 2.3149 45 1 1.1299 -2.6008 0.6409 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16624780_13422076.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:34:59 Heat of formation + Delta-G solvation = -12.366209 kcal Electronic energy + Delta-G solvation = -29542.579639 eV Core-core repulsion = 25334.675004 eV Total energy + Delta-G solvation = -4207.904635 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.14734 -41.70919 -40.43727 -39.15321 -38.41746 -37.22089 -35.69556 -34.59061 -33.21625 -31.99956 -31.86961 -31.08800 -29.61030 -27.40166 -24.84880 -24.12901 -23.88657 -23.47984 -23.04729 -22.12151 -21.46928 -20.97392 -19.45223 -19.30165 -18.66582 -18.30126 -17.56832 -16.86915 -16.72097 -16.51691 -16.33871 -16.25304 -16.12981 -15.91311 -15.63598 -15.29104 -15.09460 -14.96271 -14.75613 -14.42459 -14.03852 -13.75813 -13.68962 -13.30748 -13.25217 -12.87278 -12.82909 -12.43049 -12.35926 -12.27140 -12.19449 -12.12118 -11.83842 -11.66056 -11.58123 -11.50157 -11.29338 -10.90391 -10.62464 -10.26221 -10.19944 -9.98569 -9.76400 -4.89747 -0.39478 0.16692 0.85798 1.28927 1.62238 1.73554 1.84610 1.89224 2.00242 2.06767 2.59147 3.14089 3.16855 3.38787 3.48520 3.56643 3.66921 3.71498 3.79049 3.87401 3.98036 4.09317 4.14102 4.21687 4.29542 4.32713 4.33671 4.40399 4.44331 4.45083 4.51228 4.64677 4.66175 4.78501 4.80002 5.00471 5.00933 5.04856 5.05401 5.08702 5.15386 5.17752 5.26100 5.27930 5.31628 5.50175 5.61856 6.23113 6.44964 6.51576 6.72949 7.20498 7.70377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.094 4.094 3 Si 0.782 3.218 4 C -0.071 4.071 5 C -0.134 4.134 6 C -0.053 4.053 7 C -0.179 4.179 8 C 0.557 3.443 9 O -0.562 6.562 10 N -0.710 5.710 11 C 0.148 3.852 12 H 0.074 0.926 13 C -0.115 4.115 14 C -0.102 4.102 15 C 0.003 3.997 16 H 0.109 0.891 17 C 0.192 3.808 18 N -0.342 5.342 19 N -0.354 5.354 20 C 0.168 3.832 21 N -0.570 5.570 22 C -0.107 4.107 23 C -0.123 4.123 24 C 0.152 3.848 25 O -0.499 6.499 26 C -0.141 4.141 27 H 0.388 0.612 28 H 0.127 0.873 29 H -0.308 1.308 30 H -0.272 1.272 31 H 0.161 0.839 32 H 0.170 0.830 33 H 0.414 0.586 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.261 0.739 39 H 0.445 0.555 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.051 0.949 44 H 0.407 0.593 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.707 1.699 -4.007 5.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.202 4.202 3 Si 0.686 3.314 4 C -0.071 4.071 5 C -0.151 4.151 6 C -0.071 4.071 7 C -0.183 4.183 8 C 0.345 3.655 9 O -0.441 6.441 10 N -0.362 5.362 11 C 0.043 3.957 12 H 0.092 0.908 13 C -0.153 4.153 14 C -0.141 4.141 15 C -0.018 4.018 16 H 0.127 0.873 17 C -0.079 4.079 18 N -0.182 5.182 19 N -0.193 5.193 20 C -0.122 4.122 21 N -0.184 5.184 22 C -0.146 4.146 23 C -0.161 4.161 24 C 0.105 3.895 25 O -0.312 6.312 26 C -0.160 4.160 27 H 0.237 0.763 28 H 0.145 0.855 29 H -0.237 1.237 30 H -0.198 1.198 31 H 0.178 0.822 32 H 0.187 0.813 33 H 0.253 0.747 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.277 0.723 39 H 0.288 0.712 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.099 0.901 43 H 0.070 0.930 44 H 0.267 0.733 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.519 2.718 -3.066 5.401 hybrid contribution -1.539 -1.788 -0.787 2.487 sum 1.980 0.930 -3.853 4.430 Atomic orbital electron populations 1.86605 1.18451 1.80493 1.50216 1.25484 0.83566 1.12744 0.98431 0.93979 0.89837 0.70927 0.76654 1.20473 0.96591 0.93427 0.96645 1.21280 0.98936 1.01221 0.93659 1.21510 0.96391 0.91455 0.97739 1.20480 1.04657 0.96184 0.96966 1.18270 0.77819 0.86308 0.83103 1.90806 1.57818 1.16630 1.78875 1.45856 1.55885 1.13958 1.20523 1.21008 0.93776 0.97287 0.83611 0.90828 1.21742 0.96432 1.00185 0.96963 1.21479 0.96973 1.01965 0.93664 1.19829 0.95604 0.99530 0.86814 0.87297 1.25218 1.01463 0.82090 0.99152 1.74190 1.17130 1.26369 1.00499 1.74191 1.21921 0.98298 1.24860 1.27287 0.98184 1.01774 0.84953 1.44102 1.48039 1.08994 1.17259 1.21516 0.96436 0.99452 0.97173 1.21817 0.97997 1.01865 0.94462 1.18755 0.93650 0.84947 0.92125 1.84718 1.50335 1.13593 1.82518 1.21349 1.01932 0.95328 0.97348 0.76308 0.85498 1.23713 1.19794 0.82163 0.81289 0.74730 0.89491 0.89043 0.91225 0.90777 0.72347 0.71186 0.90854 0.91092 0.90129 0.92996 0.73292 0.84944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.34 12.83 -148.98 -1.91 -2.25 16 2 C -0.09 0.36 2.79 71.24 0.20 0.56 16 3 Si 0.78 -4.97 29.86 68.60 2.05 -2.92 16 4 C -0.07 0.24 5.35 -19.83 -0.11 0.13 16 5 C -0.13 0.96 8.64 22.24 0.19 1.15 16 6 C -0.05 0.37 9.54 22.52 0.21 0.59 16 7 C -0.18 -0.01 5.89 -20.01 -0.12 -0.12 16 8 C 0.56 1.33 7.73 86.70 0.67 2.00 16 9 O -0.56 -6.01 14.82 16.92 0.25 -5.76 16 10 N -0.71 3.73 5.03 -445.68 -2.24 1.49 16 11 C 0.15 -0.78 2.46 44.99 0.11 -0.67 16 12 H 0.07 -0.08 7.58 -2.39 -0.02 -0.10 16 13 C -0.12 1.10 5.39 30.59 0.16 1.26 16 14 C -0.10 0.69 5.19 30.59 0.16 0.85 16 15 C 0.00 -0.01 2.66 -11.54 -0.03 -0.04 16 16 H 0.11 -0.44 8.14 -2.38 -0.02 -0.46 16 17 C 0.19 0.27 6.99 137.98 0.96 1.23 16 18 N -0.34 -3.58 12.21 -50.16 -0.61 -4.19 16 19 N -0.35 -3.60 12.21 -59.99 -0.73 -4.33 16 20 C 0.17 -0.10 13.19 180.11 2.38 2.27 16 21 N -0.57 2.21 5.96 -189.87 -1.13 1.07 16 22 C -0.11 0.63 4.97 30.58 0.15 0.78 16 23 C -0.12 0.54 5.49 30.58 0.17 0.70 16 24 C 0.15 0.49 6.72 22.84 0.15 0.65 16 25 O -0.50 -3.09 11.58 -68.77 -0.80 -3.89 16 26 C -0.14 -0.11 9.60 22.34 0.21 0.11 16 27 H 0.39 -1.99 8.70 -74.06 -0.64 -2.63 16 28 H 0.13 -0.66 7.96 -2.39 -0.02 -0.67 16 29 H -0.31 -0.84 7.11 99.48 0.71 -0.13 16 30 H -0.27 1.08 7.00 99.48 0.70 1.78 16 31 H 0.16 -1.95 4.81 -2.91 -0.01 -1.96 16 32 H 0.17 -2.51 6.40 -2.91 -0.02 -2.53 16 33 H 0.41 -4.89 6.63 -92.71 -0.61 -5.51 16 34 H 0.09 -0.91 8.14 -2.39 -0.02 -0.92 16 35 H 0.09 -1.09 8.14 -2.39 -0.02 -1.11 16 36 H 0.07 -0.48 8.14 -2.39 -0.02 -0.50 16 37 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 38 H 0.26 -2.71 8.06 -2.91 -0.02 -2.73 16 39 H 0.44 -4.88 8.29 -92.71 -0.77 -5.65 16 40 H 0.07 -0.54 7.52 -2.39 -0.02 -0.56 16 41 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 42 H 0.08 -0.49 8.14 -2.39 -0.02 -0.51 16 43 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 44 H 0.41 -0.40 9.06 -74.05 -0.67 -1.07 16 45 H 0.13 0.18 8.06 -2.91 -0.02 0.16 16 Total: 0.00 -33.88 369.41 -1.23 -35.11 By element: Atomic # 1 Polarization: -24.20 SS G_CDS: -1.59 Total: -25.78 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: 5.48 Total: 11.45 kcal Atomic # 7 Polarization: -1.24 SS G_CDS: -4.72 Total: -5.96 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: -2.46 Total: -11.90 kcal Atomic # 14 Polarization: -4.97 SS G_CDS: 2.05 Total: -2.92 kcal Total: -33.88 -1.23 -35.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16624780_13422076.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.745 kcal (2) G-P(sol) polarization free energy of solvation -33.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds