Wall clock time and date at job start Sun Mar 7 2021 05:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.37781 * 119.85338 * 2 1 4 4 C 1.39707 * 119.91011 * 180.02562 * 3 2 1 5 5 C 1.47542 * 120.19074 * 179.97438 * 4 3 2 6 6 O 1.21593 * 119.99898 * 180.02562 * 5 4 3 7 7 N 1.34775 * 119.99914 * 359.97438 * 5 4 3 8 8 C 1.46501 * 119.99670 * 180.02562 * 7 5 4 9 9 H 1.09003 * 109.47361 * 325.00275 * 8 7 5 10 10 C 1.52997 * 109.47097 * 85.00326 * 8 7 5 11 11 C 1.52999 * 109.47222 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47098 * 299.99900 * 11 10 8 13 13 H 1.09003 * 109.47057 * 300.00158 * 12 11 10 14 14 C 1.50704 * 109.47478 * 180.02562 * 12 11 10 15 15 N 1.30518 * 126.34487 * 145.02527 * 14 12 11 16 16 N 1.28604 * 109.66680 * 179.97438 * 15 14 12 17 17 C 1.30519 * 109.67489 * 0.02562 * 16 15 14 18 18 N 1.35487 * 126.34300 * 324.98084 * 14 12 11 19 19 C 1.53005 * 109.47444 * 59.99955 * 12 11 10 20 20 C 1.52997 * 109.47157 * 205.00186 * 8 7 5 21 21 C 1.40132 * 119.61777 * 0.24952 * 4 3 2 22 22 O 1.35657 * 120.15000 * 179.72454 * 21 4 3 23 23 C 1.38710 * 119.69906 * 359.49845 * 21 4 3 24 24 C 1.50703 * 119.96123 * 180.26896 * 23 21 4 25 25 O 1.42899 * 109.47184 * 285.23647 * 24 23 21 26 26 Si 1.86300 * 109.47257 * 165.23228 * 24 23 21 27 27 C 1.38060 * 120.08280 * 0.50379 * 23 21 4 28 28 H 1.08995 * 109.47526 * 90.00052 * 1 2 3 29 29 H 1.09000 * 109.47350 * 210.00082 * 1 2 3 30 30 H 1.09006 * 109.47220 * 329.99873 * 1 2 3 31 31 H 1.08005 * 120.04418 * 0.02562 * 3 2 1 32 32 H 0.96999 * 120.00249 * 0.02562 * 7 5 4 33 33 H 1.09004 * 109.46813 * 299.99524 * 10 8 7 34 34 H 1.08998 * 109.47328 * 60.00127 * 10 8 7 35 35 H 1.09002 * 109.47601 * 179.97438 * 11 10 8 36 36 H 1.09003 * 109.47296 * 59.99912 * 11 10 8 37 37 H 1.08002 * 126.34231 * 180.02562 * 17 16 15 38 38 H 0.97003 * 126.98189 * 0.03596 * 18 14 12 39 39 H 1.08998 * 109.47099 * 59.99697 * 19 12 11 40 40 H 1.08995 * 109.47501 * 180.02562 * 19 12 11 41 41 H 1.09000 * 109.47336 * 59.99563 * 20 8 7 42 42 H 1.09003 * 109.47057 * 300.00275 * 20 8 7 43 43 H 0.96702 * 113.99959 * 90.01039 * 22 21 4 44 44 H 1.08998 * 109.46751 * 45.23417 * 24 23 21 45 45 H 0.96703 * 113.99600 * 299.99659 * 25 24 23 46 46 H 1.48501 * 110.00040 * 180.02562 * 26 24 23 47 47 H 1.48500 * 109.99996 * 301.32476 * 26 24 23 48 48 H 1.07993 * 119.80368 * 179.76524 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1928 1.1950 0.0000 4 6 3.5898 1.1964 -0.0005 5 6 4.3305 2.4724 -0.0011 6 8 5.5465 2.4695 -0.0021 7 7 3.6594 3.6411 -0.0016 8 6 4.3949 4.9081 -0.0028 9 1 5.3056 4.8001 0.5864 10 6 4.7590 5.2851 -1.4402 11 6 5.5266 6.6086 -1.4414 12 6 4.6518 7.7062 -0.8324 13 1 3.7411 7.8137 -1.4216 14 6 5.4076 9.0100 -0.8342 15 7 4.8996 10.1983 -1.0172 16 7 5.8318 11.0819 -0.9542 17 6 6.9768 10.4974 -0.7287 18 7 6.7401 9.1659 -0.6453 19 6 4.2876 7.3292 0.6051 20 6 3.5206 6.0059 0.6065 21 6 4.2836 -0.0212 -0.0064 22 8 5.6401 -0.0324 -0.0126 23 6 3.5770 -1.2148 -0.0010 24 6 4.3171 -2.5275 -0.0011 25 8 4.8543 -2.7714 -1.3027 26 14 3.1444 -3.9017 0.4542 27 6 2.1965 -1.2017 -0.0005 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 1.6511 2.1294 0.0004 32 1 2.6894 3.6434 -0.0013 33 1 5.3820 4.5030 -1.8742 34 1 3.8484 5.3932 -2.0293 35 1 5.7865 6.8771 -2.4654 36 1 6.4374 6.5011 -0.8522 37 1 7.9351 10.9849 -0.6263 38 1 7.3924 8.4663 -0.4838 39 1 5.1982 7.2216 1.1943 40 1 3.6640 8.1109 1.0388 41 1 3.2611 5.7374 1.6305 42 1 2.6099 6.1139 0.0174 43 1 6.0374 -0.0378 0.8690 44 1 5.1288 -2.4870 0.7252 45 1 4.1870 -2.8201 -2.0008 46 1 3.8623 -5.2016 0.4582 47 1 2.5546 -3.6435 1.7923 48 1 1.6509 -2.1337 -0.0001 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16624780_13422088.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:35:03 Heat of formation + Delta-G solvation = -18.423465 kcal Electronic energy + Delta-G solvation = -31907.880113 eV Core-core repulsion = 27544.175197 eV Total energy + Delta-G solvation = -4363.704916 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.168 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -44.16187 -41.80830 -40.55117 -39.13858 -38.04620 -37.62403 -35.73376 -34.61053 -33.28120 -32.99395 -31.98425 -31.89949 -29.55425 -27.48988 -26.78088 -25.58476 -24.37244 -23.89096 -23.25359 -22.19584 -21.92308 -21.44233 -20.85489 -19.63386 -19.31866 -18.37317 -18.08421 -17.49955 -16.88156 -16.82916 -16.75939 -16.36058 -16.25388 -15.98216 -15.77677 -15.49952 -15.18126 -15.08244 -14.96890 -14.71004 -14.37207 -14.19240 -14.08396 -13.73851 -13.61662 -13.32158 -13.31034 -12.87738 -12.80363 -12.52268 -12.43127 -12.29738 -12.22201 -12.18608 -12.08397 -11.85281 -11.73212 -11.68165 -11.53074 -11.31405 -10.93564 -10.40126 -10.28426 -10.23056 -9.99505 -9.49003 -5.04476 -0.33292 0.08451 0.84323 1.25354 1.62166 1.73088 1.83325 1.87499 1.93811 2.05669 2.57735 3.14667 3.16925 3.40780 3.48584 3.59028 3.63694 3.66830 3.80266 3.85464 3.96265 4.10058 4.14169 4.17737 4.22000 4.29066 4.30552 4.35347 4.38087 4.42121 4.48393 4.53076 4.62381 4.64285 4.77083 4.84307 4.94658 4.98291 4.98712 5.00648 5.02675 5.05714 5.14442 5.18691 5.25074 5.28384 5.29404 5.44780 5.46957 5.70494 6.21349 6.47672 6.69226 6.75087 7.17162 7.68964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.094 4.094 3 C -0.062 4.062 4 C -0.182 4.182 5 C 0.556 3.444 6 O -0.563 6.563 7 N -0.710 5.710 8 C 0.147 3.853 9 H 0.071 0.929 10 C -0.122 4.122 11 C -0.107 4.107 12 C 0.004 3.996 13 H 0.110 0.890 14 C 0.191 3.809 15 N -0.341 5.341 16 N -0.353 5.353 17 C 0.168 3.832 18 N -0.570 5.570 19 C -0.101 4.101 20 C -0.115 4.115 21 C 0.159 3.841 22 O -0.491 6.491 23 C -0.161 4.161 24 C -0.075 4.075 25 O -0.555 6.555 26 Si 0.789 3.211 27 C -0.071 4.071 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.161 0.839 32 H 0.413 0.587 33 H 0.050 0.950 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.261 0.739 38 H 0.445 0.555 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.398 0.602 44 H 0.096 0.904 45 H 0.392 0.608 46 H -0.301 1.301 47 H -0.277 1.277 48 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.413 -3.811 1.676 7.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.094 4.094 3 C -0.081 4.081 4 C -0.185 4.185 5 C 0.345 3.655 6 O -0.442 6.442 7 N -0.362 5.362 8 C 0.043 3.957 9 H 0.089 0.911 10 C -0.161 4.161 11 C -0.146 4.146 12 C -0.017 4.017 13 H 0.128 0.872 14 C -0.080 4.080 15 N -0.181 5.181 16 N -0.192 5.192 17 C -0.122 4.122 18 N -0.184 5.184 19 C -0.141 4.141 20 C -0.153 4.153 21 C 0.112 3.888 22 O -0.303 6.303 23 C -0.162 4.162 24 C -0.183 4.183 25 O -0.363 6.363 26 Si 0.693 3.307 27 C -0.089 4.089 28 H 0.106 0.894 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.178 0.822 32 H 0.252 0.748 33 H 0.069 0.931 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.277 0.723 38 H 0.288 0.712 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.103 0.897 42 H 0.110 0.890 43 H 0.257 0.743 44 H 0.113 0.887 45 H 0.242 0.758 46 H -0.230 1.230 47 H -0.203 1.203 48 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -6.350 -3.155 1.690 7.289 hybrid contribution 2.198 -0.660 0.915 2.471 sum -4.151 -3.815 2.605 6.211 Atomic orbital electron populations 1.20932 0.87825 1.04617 1.04041 1.20153 0.98226 0.91733 0.99262 1.21456 0.90933 0.99997 0.95668 1.20445 0.95140 0.92602 1.10330 1.18301 0.86921 0.84393 0.75931 1.90805 1.14919 1.87917 1.50598 1.45856 1.10974 1.04642 1.74770 1.21009 0.95805 0.82406 0.96479 0.91050 1.21816 1.01140 0.96267 0.96830 1.21524 0.98309 0.93116 1.01620 1.19818 0.97866 0.84778 0.99253 0.87189 1.25200 0.82749 0.98189 1.01819 1.74188 1.25522 0.97541 1.20831 1.74193 0.97960 1.26872 1.20190 1.27291 1.02214 0.81151 1.01524 1.44107 1.09597 1.10263 1.54452 1.21466 1.01228 0.97348 0.94014 1.21730 0.98800 0.92164 1.02617 1.18592 0.83481 0.91006 0.95682 1.84773 1.15514 1.96103 1.33879 1.20776 0.94933 0.95117 1.05369 1.25257 1.04092 1.00025 0.88944 1.86534 1.38601 1.94246 1.16880 0.93821 0.80999 0.73030 0.82847 1.21309 0.91749 0.99512 0.96313 0.89422 0.89951 0.90001 0.82182 0.74843 0.93068 0.90011 0.90954 0.90959 0.72333 0.71213 0.91316 0.90693 0.89728 0.88967 0.74338 0.88656 0.75817 1.22965 1.20305 0.82007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 1.40 10.00 71.23 0.71 2.12 16 2 C -0.09 0.62 5.87 -19.90 -0.12 0.50 16 3 C -0.06 0.32 9.18 22.52 0.21 0.53 16 4 C -0.18 -0.38 5.89 -20.01 -0.12 -0.49 16 5 C 0.56 2.51 7.73 86.70 0.67 3.19 16 6 O -0.56 -7.29 14.82 16.91 0.25 -7.03 16 7 N -0.71 2.41 5.03 -445.69 -2.24 0.17 16 8 C 0.15 -0.56 2.45 44.99 0.11 -0.45 16 9 H 0.07 0.05 7.58 -2.39 -0.02 0.03 16 10 C -0.12 0.39 5.49 30.59 0.17 0.56 16 11 C -0.11 0.54 4.97 30.59 0.15 0.69 16 12 C 0.00 -0.01 2.66 -11.54 -0.03 -0.04 16 13 H 0.11 -0.39 8.14 -2.39 -0.02 -0.41 16 14 C 0.19 0.37 6.99 137.98 0.96 1.34 16 15 N -0.34 -3.70 12.21 -50.16 -0.61 -4.31 16 16 N -0.35 -3.72 12.21 -59.99 -0.73 -4.45 16 17 C 0.17 -0.03 13.19 180.11 2.37 2.35 16 18 N -0.57 1.87 5.96 -189.86 -1.13 0.74 16 19 C -0.10 0.59 5.19 30.58 0.16 0.75 16 20 C -0.12 0.95 5.39 30.58 0.16 1.11 16 21 C 0.16 0.82 6.69 22.84 0.15 0.97 16 22 O -0.49 -4.58 10.91 -68.81 -0.75 -5.33 16 23 C -0.16 -0.07 5.27 -19.79 -0.10 -0.17 16 24 C -0.07 -0.06 2.37 71.24 0.17 0.11 16 25 O -0.55 -1.99 12.88 -148.98 -1.92 -3.91 16 26 Si 0.79 -2.76 29.91 68.60 2.05 -0.71 16 27 C -0.07 0.37 8.30 22.30 0.19 0.55 16 28 H 0.09 -1.15 8.14 -2.39 -0.02 -1.17 16 29 H 0.08 -1.08 8.08 -2.39 -0.02 -1.10 16 30 H 0.08 -1.10 8.08 -2.38 -0.02 -1.12 16 31 H 0.16 -1.92 6.40 -2.91 -0.02 -1.94 16 32 H 0.41 -4.04 6.63 -92.71 -0.61 -4.65 16 33 H 0.05 0.13 8.14 -2.39 -0.02 0.11 16 34 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 35 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 36 H 0.07 -0.46 7.52 -2.39 -0.02 -0.48 16 37 H 0.26 -2.60 8.06 -2.91 -0.02 -2.62 16 38 H 0.44 -4.56 8.29 -92.71 -0.77 -5.33 16 39 H 0.07 -0.40 8.14 -2.39 -0.02 -0.42 16 40 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 41 H 0.08 -0.75 8.14 -2.39 -0.02 -0.77 16 42 H 0.09 -1.00 8.14 -2.39 -0.02 -1.02 16 43 H 0.40 1.32 9.06 -74.06 -0.67 0.65 16 44 H 0.10 0.29 7.83 -2.39 -0.02 0.27 16 45 H 0.39 -2.05 8.70 -74.06 -0.64 -2.70 16 46 H -0.30 -1.44 7.11 99.48 0.71 -0.74 16 47 H -0.28 -0.02 7.11 99.48 0.71 0.68 16 48 H 0.16 -1.80 5.10 -2.91 -0.01 -1.82 16 Total: 0.00 -35.96 390.40 -0.87 -36.83 By element: Atomic # 1 Polarization: -23.99 SS G_CDS: -1.61 Total: -25.60 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: 5.82 Total: 13.60 kcal Atomic # 7 Polarization: -3.13 SS G_CDS: -4.72 Total: -7.84 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -2.42 Total: -16.28 kcal Atomic # 14 Polarization: -2.76 SS G_CDS: 2.05 Total: -0.71 kcal Total: -35.96 -0.87 -36.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16624780_13422088.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.411 kcal (2) G-P(sol) polarization free energy of solvation -35.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds