Wall clock time and date at job start Sun Mar 7 2021 05:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.39055 * 110.99854 * 236.04434 * 2 1 3 5 5 C 1.39189 * 119.93336 * 239.73141 * 4 2 1 6 6 C 1.50703 * 119.96719 * 359.97351 * 5 4 2 7 7 O 1.42906 * 109.46846 * 75.00214 * 6 5 4 8 8 Si 1.86295 * 109.47478 * 195.00132 * 6 5 4 9 9 C 1.37629 * 120.07188 * 179.72623 * 5 4 2 10 10 C 1.39785 * 119.92237 * 0.54758 * 9 5 4 11 11 C 1.47526 * 120.06297 * 179.74858 * 10 9 5 12 12 O 1.21588 * 120.00221 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99745 * 179.97438 * 11 10 9 14 14 C 1.46501 * 120.00083 * 180.02562 * 13 11 10 15 15 H 1.08996 * 109.47007 * 34.99285 * 14 13 11 16 16 C 1.52996 * 109.47077 * 154.99879 * 14 13 11 17 17 C 1.53005 * 109.47075 * 179.97438 * 16 14 13 18 18 C 1.53001 * 109.47049 * 300.00068 * 17 16 14 19 19 H 1.08993 * 109.47052 * 299.99913 * 18 17 16 20 20 C 1.50700 * 109.47021 * 179.97438 * 18 17 16 21 21 N 1.30520 * 126.34509 * 95.02393 * 20 18 17 22 22 N 1.28591 * 109.67181 * 179.97438 * 21 20 18 23 23 C 1.30513 * 109.67848 * 0.02562 * 22 21 20 24 24 N 1.35496 * 107.30551 * 359.77497 * 23 22 21 25 25 C 1.53006 * 109.47186 * 59.99997 * 18 17 16 26 26 C 1.53000 * 109.46799 * 299.99925 * 25 18 17 27 27 C 1.39807 * 119.86899 * 359.72135 * 10 9 5 28 28 C 1.37595 * 119.92764 * 0.02562 * 27 10 9 29 29 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 30 30 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 31 31 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 32 32 H 1.09006 * 109.46770 * 56.04400 * 3 2 1 33 33 H 1.09001 * 109.47456 * 176.04615 * 3 2 1 34 34 H 1.09000 * 109.46814 * 296.04921 * 3 2 1 35 35 H 1.09001 * 109.47495 * 315.00696 * 6 5 4 36 36 H 0.96694 * 113.99973 * 179.97438 * 7 6 5 37 37 H 1.48498 * 110.00059 * 300.00683 * 8 6 5 38 38 H 1.48505 * 109.99618 * 61.32248 * 8 6 5 39 39 H 1.07995 * 120.03959 * 180.26609 * 9 5 4 40 40 H 0.97002 * 119.99714 * 359.97438 * 13 11 10 41 41 H 1.08998 * 109.47251 * 299.99547 * 16 14 13 42 42 H 1.09002 * 109.47013 * 59.99835 * 16 14 13 43 43 H 1.09005 * 109.46810 * 59.99752 * 17 16 14 44 44 H 1.08997 * 109.47302 * 179.97438 * 17 16 14 45 45 H 1.08000 * 126.35559 * 180.02562 * 23 22 21 46 46 H 0.96995 * 126.98427 * 180.22998 * 24 23 22 47 47 H 1.09000 * 109.46963 * 59.99359 * 25 18 17 48 48 H 1.08992 * 109.47303 * 179.97438 * 25 18 17 49 49 H 1.09002 * 109.47319 * 299.99785 * 26 25 18 50 50 H 1.08997 * 109.46972 * 180.02562 * 26 25 18 51 51 H 1.07994 * 120.03787 * 180.02562 * 27 10 9 52 52 H 1.07994 * 119.96428 * 179.97438 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9673 -0.7251 -1.0768 5 6 2.7838 -1.8297 -0.8521 6 6 3.1270 -2.2378 0.5575 7 8 1.9957 -2.8708 1.1589 8 14 4.5611 -3.4265 0.5282 9 6 3.2740 -2.5528 -1.9156 10 6 2.9603 -2.1699 -3.2228 11 6 3.4885 -2.9395 -4.3653 12 8 4.1979 -3.9075 -4.1703 13 7 3.1848 -2.5694 -5.6251 14 6 3.7089 -3.3339 -6.7597 15 1 3.7552 -4.3903 -6.4955 16 6 2.7881 -3.1499 -7.9675 17 6 3.3358 -3.9478 -9.1526 18 6 4.7390 -3.4466 -9.5000 19 1 4.6924 -2.3901 -9.7638 20 6 5.2787 -4.2329 -10.6668 21 7 5.2203 -3.8891 -11.9246 22 7 5.7796 -4.7939 -12.6471 23 6 6.2198 -5.7563 -11.8833 24 7 5.9187 -5.4256 -10.6043 25 6 5.6599 -3.6306 -8.2920 26 6 5.1121 -2.8327 -7.1070 27 6 2.1445 -1.0566 -3.4455 28 6 1.6533 -0.3409 -2.3778 29 1 -0.3634 -1.0252 0.0708 30 1 -0.3633 0.4513 -0.9233 31 1 -0.3633 0.5740 0.8525 32 1 1.5899 1.9163 0.8525 33 1 3.0829 1.3431 0.0709 34 1 1.7045 1.8723 -0.9233 35 1 3.3990 -1.3545 1.1355 36 1 2.1451 -3.1607 2.0692 37 1 4.2030 -4.6351 -0.2568 38 1 5.7531 -2.7698 -0.0659 39 1 3.9039 -3.4123 -1.7405 40 1 2.6186 -1.7973 -5.7807 41 1 1.7883 -3.5066 -7.7199 42 1 2.7419 -2.0934 -8.2316 43 1 3.3823 -5.0044 -8.8887 44 1 2.6795 -3.8172 -10.0130 45 1 6.7330 -6.6488 -12.2096 46 1 6.1191 -5.9391 -9.8062 47 1 5.7063 -4.6871 -8.0282 48 1 6.6596 -3.2740 -8.5396 49 1 5.0656 -1.7761 -7.3709 50 1 5.7684 -2.9633 -6.2466 51 1 1.9000 -0.7586 -4.4543 52 1 1.0234 0.5194 -2.5492 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16624780_13422196.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:35:07 Heat of formation + Delta-G solvation = 47.216320 kcal Electronic energy + Delta-G solvation = -33743.953935 eV Core-core repulsion = 29325.276417 eV Total energy + Delta-G solvation = -4418.677519 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 372.195 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -44.18575 -41.86348 -40.83295 -39.39117 -37.74318 -37.28393 -35.92674 -34.64719 -33.27475 -32.40191 -31.94512 -31.35734 -29.58345 -28.53559 -26.93357 -26.32376 -24.68777 -24.15468 -23.43333 -23.12591 -22.85072 -22.11998 -21.36051 -20.82347 -19.34700 -18.96793 -18.32698 -17.94681 -17.69197 -16.90429 -16.84293 -16.44520 -16.40702 -16.30106 -15.98399 -15.92364 -15.67469 -15.23554 -15.19464 -14.95960 -14.87734 -14.63334 -14.17773 -14.13021 -13.89242 -13.80066 -13.64228 -13.36077 -13.32477 -13.05924 -12.88876 -12.76963 -12.64297 -12.47397 -12.35709 -12.26318 -12.18724 -12.05350 -11.87733 -11.74255 -11.57420 -11.39681 -11.17567 -10.34928 -10.27705 -10.26858 -10.18960 -9.87759 -9.53351 -5.05447 -0.50400 0.01441 0.81982 1.26947 1.50081 1.58011 1.81164 1.84076 1.90878 1.94012 2.49317 2.74118 3.11318 3.34787 3.44547 3.55241 3.58627 3.60013 3.76729 3.86603 3.93512 3.96912 4.05651 4.08553 4.14434 4.16163 4.25146 4.25565 4.34306 4.37024 4.38938 4.40332 4.42734 4.46291 4.57839 4.58557 4.60621 4.70523 4.74436 4.90769 4.93576 4.94593 4.97924 4.99489 5.00484 5.00915 5.01939 5.11265 5.15678 5.19896 5.21389 5.36173 5.44651 5.84810 6.19063 6.22161 6.33458 6.96193 6.99563 7.66855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.518 5.518 3 C 0.024 3.976 4 C 0.142 3.858 5 C -0.083 4.083 6 C -0.046 4.046 7 O -0.553 6.553 8 Si 0.753 3.247 9 C -0.083 4.083 10 C -0.153 4.153 11 C 0.559 3.441 12 O -0.582 6.582 13 N -0.704 5.704 14 C 0.144 3.856 15 H 0.072 0.928 16 C -0.115 4.115 17 C -0.102 4.102 18 C 0.004 3.996 19 H 0.111 0.889 20 C 0.191 3.809 21 N -0.341 5.341 22 N -0.353 5.353 23 C 0.169 3.831 24 N -0.570 5.570 25 C -0.107 4.107 26 C -0.122 4.122 27 C -0.055 4.055 28 C -0.155 4.155 29 H 0.060 0.940 30 H 0.041 0.959 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.066 0.934 34 H 0.042 0.958 35 H 0.093 0.907 36 H 0.400 0.600 37 H -0.303 1.303 38 H -0.296 1.296 39 H 0.112 0.888 40 H 0.416 0.584 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.261 0.739 46 H 0.445 0.555 47 H 0.072 0.928 48 H 0.074 0.926 49 H 0.084 0.916 50 H 0.052 0.948 51 H 0.167 0.833 52 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.385 3.222 6.161 7.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.239 5.239 3 C -0.122 4.122 4 C 0.047 3.953 5 C -0.084 4.084 6 C -0.157 4.157 7 O -0.362 6.362 8 Si 0.662 3.338 9 C -0.102 4.102 10 C -0.156 4.156 11 C 0.347 3.653 12 O -0.463 6.463 13 N -0.355 5.355 14 C 0.040 3.960 15 H 0.090 0.910 16 C -0.153 4.153 17 C -0.141 4.141 18 C -0.017 4.017 19 H 0.129 0.871 20 C -0.080 4.080 21 N -0.181 5.181 22 N -0.192 5.192 23 C -0.121 4.121 24 N -0.184 5.184 25 C -0.146 4.146 26 C -0.161 4.161 27 C -0.074 4.074 28 C -0.174 4.174 29 H 0.079 0.921 30 H 0.060 0.940 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.085 0.915 34 H 0.060 0.940 35 H 0.111 0.889 36 H 0.250 0.750 37 H -0.232 1.232 38 H -0.223 1.223 39 H 0.129 0.871 40 H 0.255 0.745 41 H 0.102 0.898 42 H 0.112 0.888 43 H 0.087 0.913 44 H 0.094 0.906 45 H 0.277 0.723 46 H 0.288 0.712 47 H 0.091 0.909 48 H 0.092 0.908 49 H 0.102 0.898 50 H 0.071 0.929 51 H 0.184 0.816 52 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -1.762 2.925 4.259 5.459 hybrid contribution 0.040 -0.412 0.242 0.480 sum -1.722 2.512 4.501 5.434 Atomic orbital electron populations 1.22453 0.84250 1.02631 1.02019 1.59362 1.09680 1.14790 1.40056 1.22566 1.00930 0.86331 1.02346 1.18962 0.93391 0.92944 0.90018 1.19483 0.98891 0.95735 0.94270 1.24362 0.96832 1.02891 0.91627 1.86433 1.36600 1.79433 1.33742 0.94891 0.74451 0.76803 0.87636 1.21056 0.98397 0.98178 0.92613 1.19890 1.03680 0.99425 0.92583 1.18350 0.79615 0.83347 0.83972 1.90776 1.39788 1.29669 1.86070 1.45832 1.52260 1.33163 1.04276 1.21097 0.93649 0.96087 0.85217 0.91001 1.21745 0.98744 1.02722 0.92118 1.21476 0.94019 1.00200 0.98377 1.19814 0.95154 0.99267 0.87486 0.87104 1.25183 0.98566 0.87600 0.96627 1.74184 1.20002 1.22910 1.00960 1.74187 1.14787 1.01568 1.28650 1.27297 1.02026 1.02618 0.80191 1.44111 1.44445 1.18645 1.11238 1.21529 0.98766 1.01368 0.92923 1.21825 0.95672 1.01162 0.97439 1.21484 0.93134 0.91731 1.01082 1.21954 1.01699 1.01636 0.92145 0.92149 0.94041 0.89358 0.89194 0.91477 0.93981 0.88891 0.74974 1.23176 1.22318 0.87057 0.74520 0.89756 0.88803 0.91322 0.90603 0.72303 0.71220 0.90947 0.90757 0.89768 0.92929 0.81560 0.82531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.08 9.34 127.69 1.19 1.11 16 2 N -0.52 0.15 4.20 -745.08 -3.13 -2.98 16 3 C 0.02 -0.10 9.38 127.69 1.20 1.10 16 4 C 0.14 0.33 4.70 38.47 0.18 0.51 16 5 C -0.08 -0.52 5.30 -19.78 -0.10 -0.62 16 6 C -0.05 -0.11 2.32 71.24 0.17 0.06 16 7 O -0.55 -1.01 12.86 -148.98 -1.92 -2.93 16 8 Si 0.75 2.23 30.20 68.60 2.07 4.30 16 9 C -0.08 -0.79 8.19 22.50 0.18 -0.61 16 10 C -0.15 -0.80 5.88 -20.07 -0.12 -0.92 16 11 C 0.56 3.79 7.73 86.69 0.67 4.46 16 12 O -0.58 -9.19 16.00 -3.99 -0.06 -9.26 16 13 N -0.70 1.46 5.03 -445.72 -2.24 -0.78 16 14 C 0.14 -0.42 2.46 44.99 0.11 -0.30 16 15 H 0.07 0.13 7.58 -2.39 -0.02 0.11 16 16 C -0.12 0.86 5.39 30.59 0.16 1.03 16 17 C -0.10 0.54 5.19 30.60 0.16 0.70 16 18 C 0.00 -0.01 2.66 -11.54 -0.03 -0.04 16 19 H 0.11 -0.37 8.14 -2.39 -0.02 -0.39 16 20 C 0.19 0.41 6.99 137.98 0.96 1.38 16 21 N -0.34 -3.76 12.21 -50.15 -0.61 -4.37 16 22 N -0.35 -3.78 12.21 -59.99 -0.73 -4.51 16 23 C 0.17 0.00 13.19 180.11 2.37 2.38 16 24 N -0.57 1.76 5.96 -189.86 -1.13 0.63 16 25 C -0.11 0.53 4.97 30.60 0.15 0.68 16 26 C -0.12 0.37 5.49 30.59 0.17 0.54 16 27 C -0.06 0.13 9.53 22.50 0.21 0.34 16 28 C -0.15 0.29 8.53 22.36 0.19 0.48 16 29 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 30 H 0.04 -0.20 7.10 -2.39 -0.02 -0.21 16 31 H 0.09 -0.43 8.12 -2.38 -0.02 -0.45 16 32 H 0.09 -0.57 8.12 -2.38 -0.02 -0.59 16 33 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 34 H 0.04 -0.25 7.31 -2.39 -0.02 -0.27 16 35 H 0.09 -0.05 7.78 -2.39 -0.02 -0.07 16 36 H 0.40 -3.28 8.74 -74.06 -0.65 -3.93 16 37 H -0.30 -3.67 6.74 99.48 0.67 -2.99 16 38 H -0.30 -2.77 7.11 99.48 0.71 -2.06 16 39 H 0.11 1.57 4.47 -2.91 -0.01 1.56 16 40 H 0.42 -3.69 6.62 -92.71 -0.61 -4.30 16 41 H 0.08 -0.67 8.14 -2.39 -0.02 -0.68 16 42 H 0.09 -0.97 8.14 -2.39 -0.02 -0.99 16 43 H 0.07 -0.36 8.14 -2.38 -0.02 -0.38 16 44 H 0.08 -0.26 8.14 -2.39 -0.02 -0.28 16 45 H 0.26 -2.57 8.06 -2.91 -0.02 -2.59 16 46 H 0.44 -4.47 8.28 -92.71 -0.77 -5.23 16 47 H 0.07 -0.45 7.51 -2.39 -0.02 -0.47 16 48 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 49 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 50 H 0.05 0.12 8.14 -2.39 -0.02 0.10 16 51 H 0.17 -1.75 6.39 -2.91 -0.02 -1.77 16 52 H 0.16 -1.09 6.99 -2.91 -0.02 -1.11 16 Total: 0.00 -34.66 414.21 -0.97 -35.63 By element: Atomic # 1 Polarization: -26.94 SS G_CDS: -1.05 Total: -27.99 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: 7.83 Total: 12.25 kcal Atomic # 7 Polarization: -4.16 SS G_CDS: -7.85 Total: -12.01 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: -1.98 Total: -12.19 kcal Atomic # 14 Polarization: 2.23 SS G_CDS: 2.07 Total: 4.30 kcal Total: -34.66 -0.97 -35.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16624780_13422196.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.847 kcal (2) G-P(sol) polarization free energy of solvation -34.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds