Wall clock time and date at job start Sun Mar 7 2021 05:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86307 * 109.47047 * 2 1 4 4 C 1.50697 * 109.47335 * 119.99814 * 2 1 3 5 5 C 1.32694 * 124.68261 * 65.00024 * 4 2 1 6 6 C 1.44504 * 113.10076 * 179.97438 * 5 4 2 7 7 C 1.47046 * 123.49356 * 179.97438 * 6 5 4 8 8 O 1.21654 * 120.00028 * 180.02562 * 7 6 5 9 9 N 1.34775 * 119.99940 * 359.97438 * 7 6 5 10 10 C 1.46499 * 119.99883 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47162 * 325.00614 * 10 9 7 12 12 C 1.53007 * 109.46804 * 85.00393 * 10 9 7 13 13 C 1.53001 * 109.46814 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.46876 * 299.99609 * 13 12 10 15 15 H 1.08993 * 109.47312 * 300.00240 * 14 13 12 16 16 C 1.50698 * 109.47009 * 180.02562 * 14 13 12 17 17 N 1.30519 * 126.34910 * 144.69114 * 16 14 13 18 18 N 1.28599 * 109.67831 * 179.82780 * 17 16 14 19 19 C 1.30529 * 109.66766 * 0.44583 * 18 17 16 20 20 N 1.35495 * 107.30550 * 359.73294 * 19 18 17 21 21 C 1.52998 * 109.47042 * 60.00423 * 14 13 12 22 22 C 1.52996 * 109.47181 * 205.00247 * 10 9 7 23 23 C 1.36228 * 113.01320 * 359.97438 * 6 5 4 24 24 Cl 1.73595 * 124.60461 * 179.97438 * 23 6 5 25 25 S 1.70446 * 110.79190 * 359.97438 * 23 6 5 26 26 H 0.96708 * 113.99909 * 299.99853 * 1 2 3 27 27 H 1.08999 * 109.47158 * 240.00307 * 2 1 3 28 28 H 1.48502 * 110.00024 * 299.99853 * 3 2 1 29 29 H 1.48500 * 109.99944 * 61.32044 * 3 2 1 30 30 H 1.08000 * 123.45019 * 359.69623 * 5 4 2 31 31 H 0.96998 * 120.00090 * 0.02562 * 9 7 6 32 32 H 1.08998 * 109.46954 * 299.99498 * 12 10 9 33 33 H 1.09002 * 109.47080 * 60.00171 * 12 10 9 34 34 H 1.09001 * 109.46746 * 180.02562 * 13 12 10 35 35 H 1.08993 * 109.47346 * 59.99828 * 13 12 10 36 36 H 1.07995 * 126.34216 * 179.72850 * 19 18 17 37 37 H 0.96997 * 126.97421 * 180.02562 * 20 19 18 38 38 H 1.08999 * 109.47173 * 179.97438 * 21 14 13 39 39 H 1.09004 * 109.46778 * 60.00045 * 21 14 13 40 40 H 1.09002 * 109.47373 * 300.00239 * 22 10 9 41 41 H 1.09002 * 109.47322 * 60.00230 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 1.2304 5 6 1.7483 -1.9996 1.4857 6 6 2.3363 -2.4188 2.7373 7 6 2.2693 -3.7977 3.2438 8 8 2.7870 -4.0808 4.3076 9 7 1.6334 -4.7477 2.5298 10 6 1.5671 -6.1215 3.0342 11 1 2.4905 -6.3597 3.5621 12 6 0.3822 -6.2562 3.9928 13 6 0.3134 -7.6908 4.5200 14 6 0.1330 -8.6570 3.3474 15 1 -0.7904 -8.4191 2.8194 16 6 0.0646 -10.0700 3.8667 17 7 -0.6674 -11.0369 3.3842 18 7 -0.4761 -12.1082 4.0693 19 6 0.3796 -11.8709 5.0260 20 7 0.7470 -10.5706 4.9247 21 6 1.3178 -8.5222 2.3888 22 6 1.3865 -7.0872 1.8613 23 6 2.9592 -1.4042 3.3994 24 17 3.7636 -1.5722 4.9285 25 16 2.8414 0.0526 2.5226 26 1 -0.3933 0.4417 0.7651 27 1 1.7923 -0.5138 -0.8900 28 1 1.5615 2.4679 -1.2085 29 1 1.5879 2.4586 1.2242 30 1 1.2108 -2.6662 0.8276 31 1 1.2203 -4.5219 1.6818 32 1 0.5110 -5.5683 4.8285 33 1 -0.5412 -6.0180 3.4649 34 1 -0.5310 -7.7869 5.2026 35 1 1.2368 -7.9286 5.0480 36 1 0.7296 -12.5795 5.7619 37 1 1.3721 -10.0950 5.4939 38 1 1.1895 -9.2108 1.5536 39 1 2.2412 -8.7601 2.9168 40 1 0.4631 -6.8490 1.3334 41 1 2.2305 -6.9912 1.1783 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16624780_13431040.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:35:18 Heat of formation + Delta-G solvation = 32.308584 kcal Electronic energy + Delta-G solvation = -27973.112713 eV Core-core repulsion = 23815.179968 eV Total energy + Delta-G solvation = -4157.932745 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 369.070 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.15074 -41.29771 -39.63475 -38.78018 -37.96927 -37.01403 -35.72216 -34.57020 -32.46709 -31.87140 -31.62435 -29.71299 -26.89725 -26.05604 -24.40290 -23.91913 -23.21769 -22.25180 -21.97968 -21.13155 -20.49822 -19.38877 -19.29327 -18.13239 -17.89406 -17.01786 -16.86013 -16.50417 -16.41179 -16.29654 -15.96204 -15.76293 -15.52436 -15.20062 -14.91287 -14.77554 -14.40852 -14.33828 -14.06012 -13.92294 -13.64486 -13.27837 -12.96879 -12.82121 -12.60165 -12.48194 -12.41662 -12.28700 -12.19636 -12.07115 -11.84252 -11.79474 -11.66028 -11.51278 -11.29000 -10.94189 -10.70553 -10.26090 -10.15139 -9.87600 -9.64862 -5.03652 -0.61459 -0.17650 0.49605 0.74306 0.85423 1.05726 1.19588 1.53082 1.84363 1.88899 1.90700 2.15691 2.20320 3.16470 3.26412 3.48573 3.54283 3.66578 3.84318 3.87370 3.91379 3.98487 4.13144 4.21300 4.31788 4.33580 4.40159 4.41093 4.43833 4.51920 4.54900 4.66130 4.79548 4.81757 4.98135 5.00951 5.02240 5.04602 5.08755 5.16561 5.27038 5.30929 5.49836 6.22921 6.42102 6.48956 7.17302 7.70056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.535 6.535 2 C -0.027 4.027 3 Si 0.700 3.300 4 C -0.225 4.225 5 C -0.066 4.066 6 C -0.166 4.166 7 C 0.572 3.428 8 O -0.557 6.557 9 N -0.706 5.706 10 C 0.148 3.852 11 H 0.075 0.925 12 C -0.121 4.121 13 C -0.107 4.107 14 C 0.003 3.997 15 H 0.108 0.892 16 C 0.192 3.808 17 N -0.343 5.343 18 N -0.354 5.354 19 C 0.168 3.832 20 N -0.569 5.569 21 C -0.101 4.101 22 C -0.116 4.116 23 C -0.139 4.139 24 Cl 0.002 6.998 25 S 0.257 5.743 26 H 0.389 0.611 27 H 0.151 0.849 28 H -0.270 1.270 29 H -0.259 1.259 30 H 0.182 0.818 31 H 0.414 0.586 32 H 0.055 0.945 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.261 0.739 37 H 0.445 0.555 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.089 0.911 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.389 4.545 -1.926 5.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.343 6.343 2 C -0.140 4.140 3 Si 0.603 3.397 4 C -0.343 4.343 5 C -0.095 4.095 6 C -0.185 4.185 7 C 0.358 3.642 8 O -0.437 6.437 9 N -0.358 5.358 10 C 0.044 3.956 11 H 0.093 0.907 12 C -0.160 4.160 13 C -0.145 4.145 14 C -0.018 4.018 15 H 0.126 0.874 16 C -0.079 4.079 17 N -0.182 5.182 18 N -0.193 5.193 19 C -0.122 4.122 20 N -0.184 5.184 21 C -0.140 4.140 22 C -0.154 4.154 23 C -0.286 4.286 24 Cl 0.031 6.969 25 S 0.522 5.478 26 H 0.239 0.761 27 H 0.168 0.832 28 H -0.195 1.195 29 H -0.184 1.184 30 H 0.199 0.801 31 H 0.251 0.749 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.277 0.723 37 H 0.288 0.712 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.108 0.892 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.127 5.467 -2.295 6.704 hybrid contribution -0.418 -0.818 1.589 1.835 sum 2.709 4.649 -0.707 5.427 Atomic orbital electron populations 1.86628 1.17405 1.80099 1.50207 1.24459 0.83565 1.09779 0.96149 0.94531 0.90960 0.74085 0.80152 1.24854 1.08304 0.98580 1.02531 1.21167 0.98812 0.95433 0.94091 1.20375 1.06186 0.94279 0.97707 1.17640 0.78170 0.84478 0.83949 1.90853 1.47434 1.82254 1.23135 1.45787 1.56315 1.08819 1.24879 1.21018 0.98932 0.80245 0.95419 0.90672 1.21818 0.99005 0.95967 0.99224 1.21528 1.02916 0.93604 0.96497 1.19825 1.02113 0.82982 0.96876 0.87378 1.25206 0.94114 0.99136 0.89428 1.74185 1.22453 0.96809 1.24797 1.74196 1.17673 1.20461 1.06945 1.27292 0.97297 0.86142 1.01454 1.44099 1.36721 1.11302 1.26255 1.21479 0.96798 0.97053 0.98704 1.21746 1.04461 0.92545 0.96624 1.25787 1.04788 1.02054 0.95963 1.98425 1.76376 1.97492 1.24568 1.83371 1.49877 1.04941 1.09579 0.76086 0.83174 1.19540 1.18424 0.80099 0.74857 0.92637 0.90233 0.91008 0.90787 0.72326 0.71173 0.90882 0.91173 0.89218 0.89722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 2.58 12.88 -148.98 -1.92 0.66 16 2 C -0.03 0.20 2.94 71.24 0.21 0.41 16 3 Si 0.70 -4.37 30.92 68.60 2.12 -2.25 16 4 C -0.23 1.34 5.65 24.51 0.14 1.48 16 5 C -0.07 0.37 9.75 22.70 0.22 0.59 16 6 C -0.17 -0.08 5.98 -19.84 -0.12 -0.20 16 7 C 0.57 1.67 7.75 86.55 0.67 2.34 16 8 O -0.56 -5.77 14.57 -4.20 -0.06 -5.83 16 9 N -0.71 2.93 5.06 -446.15 -2.26 0.67 16 10 C 0.15 -0.68 2.45 44.99 0.11 -0.57 16 11 H 0.08 -0.04 7.58 -2.39 -0.02 -0.06 16 12 C -0.12 0.52 5.49 30.60 0.17 0.69 16 13 C -0.11 0.61 4.97 30.60 0.15 0.76 16 14 C 0.00 -0.01 2.66 -11.54 -0.03 -0.04 16 15 H 0.11 -0.36 8.14 -2.39 -0.02 -0.38 16 16 C 0.19 0.35 6.99 137.98 0.96 1.31 16 17 N -0.34 -3.75 12.21 -50.16 -0.61 -4.36 16 18 N -0.35 -3.73 12.21 -59.99 -0.73 -4.46 16 19 C 0.17 -0.05 13.19 180.11 2.38 2.33 16 20 N -0.57 2.03 5.96 -189.86 -1.13 0.89 16 21 C -0.10 0.60 5.19 30.61 0.16 0.76 16 22 C -0.12 0.96 5.39 30.61 0.17 1.13 16 23 C -0.14 -0.31 6.87 67.35 0.46 0.15 16 24 Cl 0.00 0.02 27.20 -2.72 -0.07 -0.06 16 25 S 0.26 -0.87 20.19 -56.49 -1.14 -2.01 16 26 H 0.39 -3.76 8.70 -74.05 -0.64 -4.40 16 27 H 0.15 -1.62 7.96 -2.39 -0.02 -1.64 16 28 H -0.27 -0.18 7.11 99.48 0.71 0.53 16 29 H -0.26 0.65 7.11 99.48 0.71 1.35 16 30 H 0.18 -1.98 7.10 -2.91 -0.02 -2.00 16 31 H 0.41 -4.06 7.15 -92.71 -0.66 -4.72 16 32 H 0.05 0.04 8.14 -2.39 -0.02 0.02 16 33 H 0.08 -0.45 8.14 -2.39 -0.02 -0.47 16 34 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 35 H 0.07 -0.54 7.52 -2.39 -0.02 -0.56 16 36 H 0.26 -2.64 8.06 -2.91 -0.02 -2.67 16 37 H 0.45 -4.77 8.29 -92.71 -0.77 -5.54 16 38 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 39 H 0.07 -0.43 8.14 -2.39 -0.02 -0.45 16 40 H 0.09 -0.93 8.14 -2.39 -0.02 -0.95 16 41 H 0.08 -0.75 8.14 -2.39 -0.02 -0.77 16 Total: 0.00 -27.90 368.17 -1.07 -28.97 By element: Atomic # 1 Polarization: -22.44 SS G_CDS: -0.92 Total: -23.36 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: 5.65 Total: 11.14 kcal Atomic # 7 Polarization: -2.52 SS G_CDS: -4.73 Total: -7.25 kcal Atomic # 8 Polarization: -3.20 SS G_CDS: -1.98 Total: -5.18 kcal Atomic # 14 Polarization: -4.37 SS G_CDS: 2.12 Total: -2.25 kcal Atomic # 16 Polarization: -0.87 SS G_CDS: -1.14 Total: -2.01 kcal Atomic # 17 Polarization: 0.02 SS G_CDS: -0.07 Total: -0.06 kcal Total: -27.90 -1.07 -28.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16624780_13431040.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.281 kcal (2) G-P(sol) polarization free energy of solvation -27.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds