Wall clock time and date at job start Sun Mar 7 2021 05:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86299 * 109.47055 * 2 1 4 4 C 1.50700 * 109.46887 * 120.00201 * 2 1 3 5 5 C 1.34183 * 125.43869 * 65.00244 * 4 2 1 6 6 C 1.47019 * 105.95086 * 179.97438 * 5 4 2 7 7 C 1.47381 * 127.18678 * 179.97438 * 6 5 4 8 8 O 1.21613 * 120.00508 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99954 * 180.02562 * 7 6 5 10 10 C 1.46501 * 120.00518 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.47087 * 34.99139 * 10 9 7 12 12 C 1.52993 * 109.47424 * 154.99483 * 10 9 7 13 13 C 1.53005 * 109.46940 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47464 * 300.00001 * 13 12 10 15 15 H 1.09000 * 109.46869 * 300.00085 * 14 13 12 16 16 C 1.50693 * 109.47024 * 179.97438 * 14 13 12 17 17 N 1.30524 * 126.34456 * 95.02941 * 16 14 13 18 18 N 1.28592 * 109.67571 * 179.97438 * 17 16 14 19 19 C 1.30523 * 109.67062 * 359.97438 * 18 17 16 20 20 N 1.35485 * 126.34868 * 274.98428 * 16 14 13 21 21 C 1.52999 * 109.46768 * 59.99648 * 14 13 12 22 22 C 1.52997 * 109.47602 * 300.00516 * 21 14 13 23 23 C 1.36410 * 105.61997 * 0.25936 * 6 5 4 24 24 O 1.33661 * 108.39493 * 359.57559 * 23 6 5 25 25 H 0.96701 * 113.99778 * 299.99733 * 1 2 3 26 26 H 1.09001 * 109.46658 * 240.00335 * 2 1 3 27 27 H 1.48503 * 109.99854 * 178.68039 * 3 2 1 28 28 H 1.48491 * 110.00080 * 299.99779 * 3 2 1 29 29 H 1.08001 * 127.01950 * 0.02562 * 5 4 2 30 30 H 0.97001 * 119.99930 * 359.97438 * 9 7 6 31 31 H 1.09009 * 109.47263 * 60.00381 * 12 10 9 32 32 H 1.08998 * 109.47579 * 300.00100 * 12 10 9 33 33 H 1.08999 * 109.46940 * 179.97438 * 13 12 10 34 34 H 1.08996 * 109.46773 * 60.00566 * 13 12 10 35 35 H 1.07999 * 126.34611 * 180.02562 * 19 18 17 36 36 H 0.96997 * 126.98100 * 0.05747 * 20 16 14 37 37 H 1.09004 * 109.46695 * 60.00240 * 21 14 13 38 38 H 1.08998 * 109.47304 * 179.97438 * 21 14 13 39 39 H 1.09004 * 109.46870 * 299.99617 * 22 21 14 40 40 H 1.08999 * 109.47128 * 180.02562 * 22 21 14 41 41 H 1.07998 * 125.80421 * 179.73146 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 1.2305 5 6 1.7551 -2.0123 1.5036 6 6 2.4130 -2.2463 2.7974 7 6 2.5006 -3.5194 3.5348 8 8 1.9922 -4.5243 3.0758 9 7 3.1431 -3.5697 4.7184 10 6 3.2308 -4.8352 5.4513 11 1 3.3216 -5.6593 4.7437 12 6 4.4568 -4.8110 6.3661 13 6 4.5479 -6.1324 7.1319 14 6 3.2856 -6.3210 7.9758 15 1 3.1949 -5.4967 8.6831 16 6 3.3751 -7.6229 8.7295 17 7 3.7992 -7.7803 9.9538 18 7 3.7392 -9.0236 10.2763 19 6 3.2735 -9.7159 9.2725 20 7 3.0294 -8.8467 8.2622 21 6 2.0595 -6.3451 7.0608 22 6 1.9684 -5.0238 6.2950 23 6 2.9197 -1.0377 3.1757 24 8 2.6269 -0.1421 2.2277 25 1 -0.3933 0.4417 0.7651 26 1 1.7923 -0.5138 -0.8900 27 1 3.5347 1.7703 0.0321 28 1 1.5616 2.4678 -1.2084 29 1 1.2366 -2.7397 0.8966 30 1 3.5483 -2.7681 5.0848 31 1 4.3659 -3.9869 7.0739 32 1 5.3561 -4.6762 5.7651 33 1 5.4216 -6.1154 7.7834 34 1 4.6386 -6.9567 6.4246 35 1 3.1126 -10.7836 9.2513 36 1 2.6787 -9.0578 7.3828 37 1 2.1503 -7.1695 6.3535 38 1 1.1602 -6.4799 7.6618 39 1 1.8777 -4.1994 7.0024 40 1 1.0947 -5.0408 5.6436 41 1 3.4669 -0.8388 4.0853 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16624780_13456056.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:35:21 Heat of formation + Delta-G solvation = 17.305047 kcal Electronic energy + Delta-G solvation = -25951.396503 eV Core-core repulsion = 22028.542269 eV Total energy + Delta-G solvation = -3922.854233 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.15186 -43.70321 -40.99287 -39.20964 -37.99492 -35.77497 -34.61693 -33.99294 -32.56276 -31.87849 -31.61164 -29.56937 -26.70860 -25.46585 -24.31969 -23.80456 -23.19466 -22.29758 -22.07066 -21.24861 -20.58848 -19.32941 -19.27784 -17.88263 -17.53083 -17.36285 -17.17663 -16.84350 -16.38862 -16.28230 -16.01447 -15.81478 -15.56368 -15.11749 -14.98953 -14.75734 -14.25208 -14.07378 -14.02910 -13.75918 -13.53559 -13.28750 -12.84393 -12.81762 -12.42385 -12.29310 -12.22360 -12.19280 -11.84350 -11.67540 -11.51877 -11.34351 -11.13162 -10.94495 -10.62052 -10.25980 -10.14812 -9.77482 -4.97919 0.28540 0.82623 0.85384 1.18304 1.52733 1.81815 1.84348 1.88724 1.94793 2.05564 2.26724 3.16419 3.31553 3.48004 3.57712 3.60737 3.66341 3.85697 3.95609 4.00299 4.12454 4.20709 4.27337 4.32122 4.32575 4.40116 4.41583 4.43788 4.51379 4.52534 4.66890 4.79886 4.90984 5.01022 5.01335 5.04452 5.08454 5.13095 5.16413 5.26784 5.29715 5.47424 5.85112 6.22457 6.50248 6.63155 7.17304 7.70036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.037 4.037 3 Si 0.799 3.201 4 C -0.053 4.053 5 C -0.153 4.153 6 C -0.270 4.270 7 C 0.588 3.412 8 O -0.585 6.585 9 N -0.706 5.706 10 C 0.146 3.854 11 H 0.069 0.931 12 C -0.115 4.115 13 C -0.103 4.103 14 C 0.004 3.996 15 H 0.111 0.889 16 C 0.191 3.809 17 N -0.342 5.342 18 N -0.354 5.354 19 C 0.168 3.832 20 N -0.570 5.570 21 C -0.108 4.108 22 C -0.122 4.122 23 C 0.067 3.933 24 O -0.164 6.164 25 H 0.400 0.600 26 H 0.129 0.871 27 H -0.288 1.288 28 H -0.286 1.286 29 H 0.142 0.858 30 H 0.417 0.583 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.261 0.739 36 H 0.445 0.555 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.053 0.947 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.470 4.627 -0.199 4.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.354 6.354 2 C -0.146 4.146 3 Si 0.703 3.297 4 C -0.102 4.102 5 C -0.173 4.173 6 C -0.275 4.275 7 C 0.377 3.623 8 O -0.466 6.466 9 N -0.358 5.358 10 C 0.042 3.958 11 H 0.088 0.912 12 C -0.153 4.153 13 C -0.142 4.142 14 C -0.017 4.017 15 H 0.129 0.871 16 C -0.080 4.080 17 N -0.181 5.181 18 N -0.192 5.192 19 C -0.122 4.122 20 N -0.184 5.184 21 C -0.147 4.147 22 C -0.160 4.160 23 C -0.003 4.003 24 O -0.059 6.059 25 H 0.251 0.749 26 H 0.146 0.854 27 H -0.215 1.215 28 H -0.213 1.213 29 H 0.160 0.840 30 H 0.254 0.746 31 H 0.113 0.887 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.276 0.724 36 H 0.288 0.712 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.071 0.929 41 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 1.352 4.832 0.056 5.018 hybrid contribution -0.623 -1.569 -1.726 2.415 sum 0.729 3.262 -1.670 3.737 Atomic orbital electron populations 1.86546 1.16273 1.82236 1.50366 1.24667 0.85309 1.12203 0.92420 0.93180 0.77775 0.73813 0.84974 1.22743 1.01391 0.92910 0.93132 1.22564 1.02352 0.95913 0.96499 1.21503 1.11416 0.95170 0.99380 1.17483 0.77362 0.86794 0.80706 1.90784 1.48865 1.37441 1.69531 1.45727 1.56475 1.13497 1.20065 1.21027 0.95718 0.85997 0.93069 0.91242 1.21740 0.96821 0.98435 0.98282 1.21482 0.96330 0.98225 0.98133 1.19828 0.96961 0.89034 0.95898 0.87053 1.25228 1.00070 0.89854 0.92807 1.74183 1.21027 1.11010 1.11912 1.74191 1.20001 0.98742 1.26307 1.27288 1.00150 1.00647 0.84146 1.44106 1.50017 1.06970 1.17333 1.21534 0.96923 0.98508 0.97700 1.21820 0.97516 0.98060 0.98629 1.25356 0.96744 0.84995 0.93253 1.83714 1.56855 1.39082 1.26270 0.74897 0.85387 1.21478 1.21297 0.84042 0.74554 0.88666 0.89761 0.90767 0.91451 0.72372 0.71210 0.91067 0.90873 0.89667 0.92856 0.71966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.70 12.88 -148.98 -1.92 -1.22 16 2 C -0.04 0.08 2.97 71.24 0.21 0.29 16 3 Si 0.80 -3.33 32.09 68.60 2.20 -1.13 16 4 C -0.05 0.02 6.18 24.76 0.15 0.17 16 5 C -0.15 -0.62 10.90 23.65 0.26 -0.36 16 6 C -0.27 -0.14 6.31 -18.99 -0.12 -0.26 16 7 C 0.59 1.91 7.78 86.65 0.67 2.58 16 8 O -0.59 -7.73 16.65 -4.07 -0.07 -7.80 16 9 N -0.71 3.94 5.07 -445.85 -2.26 1.68 16 10 C 0.15 -0.76 2.45 44.99 0.11 -0.65 16 11 H 0.07 -0.01 7.58 -2.39 -0.02 -0.03 16 12 C -0.11 1.09 5.39 30.59 0.16 1.26 16 13 C -0.10 0.68 5.19 30.60 0.16 0.84 16 14 C 0.00 -0.02 2.66 -11.54 -0.03 -0.05 16 15 H 0.11 -0.52 8.14 -2.39 -0.02 -0.54 16 16 C 0.19 0.25 6.99 137.98 0.96 1.22 16 17 N -0.34 -3.53 12.21 -50.16 -0.61 -4.14 16 18 N -0.35 -3.59 12.21 -59.99 -0.73 -4.32 16 19 C 0.17 -0.09 13.19 180.11 2.37 2.28 16 20 N -0.57 2.16 5.96 -189.87 -1.13 1.03 16 21 C -0.11 0.67 4.97 30.59 0.15 0.83 16 22 C -0.12 0.61 5.49 30.59 0.17 0.78 16 23 C 0.07 -0.51 11.61 67.39 0.78 0.28 16 24 O -0.16 0.66 8.90 4.42 0.04 0.70 16 25 H 0.40 -3.89 8.70 -74.06 -0.64 -4.53 16 26 H 0.13 -0.21 7.96 -2.39 -0.02 -0.23 16 27 H -0.29 -0.47 7.11 99.48 0.71 0.24 16 28 H -0.29 -0.63 7.11 99.48 0.71 0.07 16 29 H 0.14 1.01 8.06 -2.91 -0.02 0.98 16 30 H 0.42 -5.59 7.57 -92.71 -0.70 -6.30 16 31 H 0.09 -1.20 8.14 -2.38 -0.02 -1.22 16 32 H 0.08 -0.84 8.14 -2.39 -0.02 -0.86 16 33 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 34 H 0.07 -0.43 8.14 -2.39 -0.02 -0.45 16 35 H 0.26 -2.67 8.06 -2.91 -0.02 -2.70 16 36 H 0.44 -4.80 8.28 -92.71 -0.77 -5.57 16 37 H 0.07 -0.52 7.52 -2.39 -0.02 -0.54 16 38 H 0.07 -0.39 8.14 -2.39 -0.02 -0.41 16 39 H 0.08 -0.64 8.14 -2.39 -0.02 -0.65 16 40 H 0.05 0.02 8.14 -2.39 -0.02 0.00 16 41 H 0.26 -5.05 7.47 -2.91 -0.02 -5.07 16 Total: 0.00 -34.71 348.60 0.56 -34.15 By element: Atomic # 1 Polarization: -27.17 SS G_CDS: -0.98 Total: -28.15 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: 6.02 Total: 9.20 kcal Atomic # 7 Polarization: -1.01 SS G_CDS: -4.74 Total: -5.75 kcal Atomic # 8 Polarization: -6.37 SS G_CDS: -1.95 Total: -8.32 kcal Atomic # 14 Polarization: -3.33 SS G_CDS: 2.20 Total: -1.13 kcal Total: -34.71 0.56 -34.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16624780_13456056.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.453 kcal (2) G-P(sol) polarization free energy of solvation -34.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds