Wall clock time and date at job start Sun Mar 7 2021 05:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86302 * 109.46951 * 2 1 4 4 C 1.50704 * 109.47072 * 119.99696 * 2 1 3 5 5 C 1.31116 * 118.54705 * 250.00115 * 4 2 1 6 6 N 1.38922 * 121.84433 * 180.38403 * 5 4 2 7 7 C 1.47025 * 118.88710 * 346.68343 * 6 5 4 8 8 C 1.50701 * 109.82293 * 163.20441 * 7 6 5 9 9 O 1.21284 * 119.99770 * 340.86146 * 8 7 6 10 10 N 1.34780 * 120.00162 * 160.86564 * 8 7 6 11 11 C 1.46492 * 119.99930 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.47696 * 34.99761 * 11 10 8 13 13 C 1.53002 * 109.47204 * 155.00105 * 11 10 8 14 14 C 1.53000 * 109.47233 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47060 * 299.99657 * 14 13 11 16 16 H 1.09002 * 109.47153 * 300.00319 * 15 14 13 17 17 C 1.50697 * 109.47466 * 180.02562 * 15 14 13 18 18 N 1.30515 * 126.34551 * 95.02233 * 17 15 14 19 19 N 1.28595 * 109.67772 * 179.97438 * 18 17 15 20 20 C 1.30522 * 109.66886 * 0.02562 * 19 18 17 21 21 N 1.35495 * 107.30854 * 359.77094 * 20 19 18 22 22 C 1.52999 * 109.47317 * 59.99960 * 15 14 13 23 23 C 1.52997 * 109.47244 * 274.99857 * 11 10 8 24 24 C 1.53541 * 107.70913 * 43.63511 * 7 6 5 25 25 C 1.50196 * 118.54332 * 69.98114 * 4 2 1 26 26 H 0.96696 * 114.00038 * 59.99937 * 1 2 3 27 27 H 1.08989 * 109.47345 * 240.00038 * 2 1 3 28 28 H 1.48498 * 109.99882 * 298.68256 * 3 2 1 29 29 H 1.48506 * 110.00019 * 59.99894 * 3 2 1 30 30 H 1.07997 * 119.07607 * 0.40570 * 5 4 2 31 31 H 0.97008 * 120.55349 * 166.70768 * 6 5 4 32 32 H 1.09001 * 109.82319 * 284.06017 * 7 6 5 33 33 H 0.96998 * 119.99716 * 359.97438 * 10 8 7 34 34 H 1.08992 * 109.47063 * 59.99836 * 13 11 10 35 35 H 1.09004 * 109.46733 * 299.99549 * 13 11 10 36 36 H 1.09002 * 109.47398 * 59.99826 * 14 13 11 37 37 H 1.09001 * 109.47194 * 180.02562 * 14 13 11 38 38 H 1.07996 * 126.34634 * 180.02562 * 20 19 18 39 39 H 0.96998 * 126.98144 * 180.22361 * 21 20 19 40 40 H 1.09000 * 109.47486 * 180.02562 * 22 15 14 41 41 H 1.09002 * 109.46716 * 60.00091 * 22 15 14 42 42 H 1.09002 * 109.47153 * 300.00242 * 23 11 10 43 43 H 1.09001 * 109.47289 * 60.00326 * 23 11 10 44 44 H 1.08996 * 109.62280 * 58.80495 * 24 7 6 45 45 H 1.09005 * 109.62252 * 179.36239 * 24 7 6 46 46 H 1.09003 * 109.33556 * 280.22619 * 25 4 2 47 47 H 1.09003 * 109.33281 * 39.88012 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.5116 -0.0027 2.1695 6 7 3.0066 -0.5880 3.3281 7 6 2.6220 -1.9711 3.6455 8 6 3.5612 -2.5385 4.6785 9 8 4.6442 -2.0240 4.8611 10 7 3.1976 -3.6176 5.3995 11 6 4.1107 -4.1695 6.4033 12 1 4.6662 -3.3584 6.8742 13 6 3.3066 -4.9212 7.4659 14 6 4.2603 -5.4970 8.5146 15 6 5.2390 -6.4601 7.8398 16 1 4.6839 -7.2715 7.3690 17 6 6.1779 -7.0278 8.8728 18 7 6.0382 -8.1607 9.5056 19 7 7.0242 -8.3297 10.3137 20 6 7.8375 -7.3121 10.2334 21 7 7.3262 -6.4590 9.3132 22 6 6.0432 -5.7086 6.7771 23 6 5.0890 -5.1327 5.7280 24 6 2.7158 -2.7907 2.3505 25 6 1.7447 -2.1976 1.3271 26 1 -0.3933 0.4417 -0.7650 27 1 1.7923 -0.5138 -0.8899 28 1 1.5878 2.4585 -1.2242 29 1 1.5614 2.4679 1.2085 30 1 2.6070 1.0650 2.0388 31 1 3.5959 -0.0922 3.9181 32 1 1.6000 -1.9930 4.0237 33 1 2.3312 -4.0288 5.2537 34 1 2.7512 -5.7322 6.9950 35 1 2.6097 -4.2349 7.9470 36 1 4.8154 -4.6856 8.9855 37 1 3.6874 -6.0329 9.2715 38 1 8.7511 -7.1771 10.7933 39 1 7.7044 -5.6123 9.0288 40 1 6.7401 -6.3948 6.2960 41 1 6.5983 -4.8972 7.2480 42 1 4.5336 -5.9438 5.2571 43 1 5.6620 -4.5973 4.9710 44 1 3.7322 -2.7429 1.9598 45 1 2.4471 -3.8275 2.5533 46 1 0.7216 -2.4137 1.6348 47 1 1.9313 -2.6487 0.3525 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16624780_15413834.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:35:32 Heat of formation + Delta-G solvation = 20.217294 kcal Electronic energy + Delta-G solvation = -28677.453562 eV Core-core repulsion = 24669.595178 eV Total energy + Delta-G solvation = -4007.858384 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -44.14895 -41.51617 -40.00396 -38.98803 -37.48067 -35.76934 -34.59489 -33.34976 -33.21976 -32.16751 -31.86688 -29.70292 -27.40083 -25.41901 -24.67727 -24.05871 -23.56342 -23.18101 -22.16821 -21.53869 -20.94979 -19.31097 -19.09293 -19.04892 -18.40065 -17.50979 -17.45179 -16.85178 -16.49481 -16.28378 -16.11124 -15.79644 -15.41522 -15.25865 -15.13151 -14.83793 -14.68809 -14.46159 -14.12747 -13.97826 -13.83262 -13.69349 -13.59621 -13.27448 -12.89574 -12.82743 -12.44422 -12.38608 -12.28011 -12.19123 -11.83868 -11.75591 -11.69832 -11.66393 -11.51053 -11.29472 -11.22642 -10.80820 -10.26034 -10.25623 -10.10596 -8.45041 -4.90470 0.85707 1.31836 1.40336 1.49011 1.58790 1.84668 1.87220 1.92569 1.95910 2.64960 3.16704 3.48615 3.57896 3.66081 3.67857 3.79373 3.86388 3.94059 3.98459 4.07330 4.13920 4.21588 4.26615 4.32956 4.33436 4.40961 4.43687 4.48225 4.50897 4.60754 4.66522 4.66793 4.79534 4.81227 5.01011 5.01765 5.03399 5.04446 5.09762 5.16649 5.25221 5.27220 5.30082 5.31727 5.48285 5.59000 6.23467 6.27296 6.48787 6.70611 6.83456 7.14202 7.70461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.563 6.563 2 C -0.058 4.058 3 Si 0.741 3.259 4 C -0.247 4.247 5 C 0.136 3.864 6 N -0.736 5.736 7 C 0.135 3.865 8 C 0.517 3.483 9 O -0.568 6.568 10 N -0.709 5.709 11 C 0.147 3.853 12 H 0.074 0.926 13 C -0.117 4.117 14 C -0.102 4.102 15 C 0.003 3.997 16 H 0.108 0.892 17 C 0.191 3.809 18 N -0.343 5.343 19 N -0.355 5.355 20 C 0.168 3.832 21 N -0.569 5.569 22 C -0.107 4.107 23 C -0.121 4.121 24 C -0.119 4.119 25 C -0.053 4.053 26 H 0.386 0.614 27 H 0.081 0.919 28 H -0.295 1.295 29 H -0.300 1.300 30 H 0.137 0.863 31 H 0.408 0.592 32 H 0.102 0.898 33 H 0.417 0.583 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.261 0.739 39 H 0.445 0.555 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.058 0.942 44 H 0.066 0.934 45 H 0.101 0.899 46 H 0.063 0.937 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.210 2.208 -2.202 3.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.168 4.168 3 Si 0.649 3.351 4 C -0.257 4.257 5 C 0.015 3.985 6 N -0.368 5.368 7 C 0.026 3.974 8 C 0.303 3.697 9 O -0.447 6.447 10 N -0.360 5.360 11 C 0.042 3.958 12 H 0.092 0.908 13 C -0.155 4.155 14 C -0.141 4.141 15 C -0.018 4.018 16 H 0.126 0.874 17 C -0.080 4.080 18 N -0.183 5.183 19 N -0.193 5.193 20 C -0.122 4.122 21 N -0.184 5.184 22 C -0.146 4.146 23 C -0.160 4.160 24 C -0.158 4.158 25 C -0.090 4.090 26 H 0.236 0.764 27 H 0.099 0.901 28 H -0.222 1.222 29 H -0.229 1.229 30 H 0.154 0.846 31 H 0.244 0.756 32 H 0.120 0.880 33 H 0.255 0.745 34 H 0.108 0.892 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.277 0.723 39 H 0.288 0.712 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.100 0.900 43 H 0.076 0.924 44 H 0.085 0.915 45 H 0.119 0.881 46 H 0.082 0.918 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.184 1.466 -0.982 2.125 hybrid contribution -0.433 1.620 -0.750 1.837 sum 0.751 3.086 -1.732 3.617 Atomic orbital electron populations 1.86574 1.19708 1.80340 1.50526 1.24721 0.83114 1.09832 0.99172 0.94528 0.90997 0.73840 0.75775 1.20145 1.12370 0.96171 0.97054 1.20499 0.95559 0.96479 0.85958 1.44328 1.54886 1.12935 1.24694 1.21111 0.97606 0.83927 0.94758 1.20712 0.87144 0.80352 0.81500 1.90716 1.24312 1.61295 1.68350 1.45910 1.21465 1.30137 1.38526 1.21012 0.90798 0.95688 0.88278 0.90821 1.21738 0.97762 1.00608 0.95348 1.21474 0.96786 0.97922 0.97925 1.19829 0.92804 0.98626 0.90531 0.87358 1.25227 0.89839 0.92279 1.00610 1.74183 1.19316 1.16072 1.08700 1.74194 1.02204 1.23830 1.19089 1.27291 1.02643 0.87600 0.94651 1.44095 1.19611 1.22152 1.32496 1.21544 0.97877 0.99577 0.95622 1.21826 0.97361 0.99026 0.97757 1.21844 1.00860 0.99643 0.93408 1.19966 0.98566 0.91105 0.99346 0.76442 0.90116 1.22227 1.22870 0.84605 0.75567 0.88007 0.74538 0.89153 0.89959 0.91243 0.91068 0.72337 0.71155 0.90915 0.90841 0.90004 0.92357 0.91545 0.88053 0.91810 0.90442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.74 12.86 -148.98 -1.92 -3.66 16 2 C -0.06 -0.02 2.80 71.24 0.20 0.18 16 3 Si 0.74 -0.38 29.92 68.60 2.05 1.67 16 4 C -0.25 -0.33 5.40 -16.76 -0.09 -0.42 16 5 C 0.14 0.15 9.62 83.41 0.80 0.95 16 6 N -0.74 -0.30 5.47 -329.01 -1.80 -2.10 16 7 C 0.13 -0.37 3.36 44.33 0.15 -0.23 16 8 C 0.52 -0.68 7.05 87.66 0.62 -0.06 16 9 O -0.57 -3.67 15.75 -3.04 -0.05 -3.72 16 10 N -0.71 5.12 5.08 -442.54 -2.25 2.88 16 11 C 0.15 -0.99 2.45 44.99 0.11 -0.88 16 12 H 0.07 -0.19 7.58 -2.39 -0.02 -0.21 16 13 C -0.12 1.11 5.39 30.60 0.16 1.27 16 14 C -0.10 0.69 5.19 30.59 0.16 0.85 16 15 C 0.00 -0.02 2.66 -11.54 -0.03 -0.05 16 16 H 0.11 -0.48 8.14 -2.39 -0.02 -0.50 16 17 C 0.19 0.20 6.99 137.98 0.96 1.16 16 18 N -0.34 -3.53 12.21 -50.16 -0.61 -4.14 16 19 N -0.35 -3.54 12.21 -59.99 -0.73 -4.27 16 20 C 0.17 -0.16 13.19 180.11 2.37 2.22 16 21 N -0.57 2.49 5.96 -189.87 -1.13 1.36 16 22 C -0.11 0.78 4.97 30.61 0.15 0.94 16 23 C -0.12 0.79 5.50 30.61 0.17 0.96 16 24 C -0.12 0.46 5.48 30.79 0.17 0.63 16 25 C -0.05 0.06 5.85 29.70 0.17 0.23 16 26 H 0.39 -1.59 8.74 -74.06 -0.65 -2.23 16 27 H 0.08 -0.22 7.96 -2.39 -0.02 -0.23 16 28 H -0.29 -1.28 7.11 99.48 0.71 -0.57 16 29 H -0.30 -1.86 6.88 99.48 0.68 -1.17 16 30 H 0.14 -0.06 4.34 -2.91 -0.01 -0.08 16 31 H 0.41 0.30 8.10 -92.70 -0.75 -0.45 16 32 H 0.10 -0.53 8.14 -2.39 -0.02 -0.55 16 33 H 0.42 -5.26 8.60 -92.71 -0.80 -6.06 16 34 H 0.09 -1.04 8.14 -2.39 -0.02 -1.06 16 35 H 0.08 -0.79 8.14 -2.39 -0.02 -0.81 16 36 H 0.07 -0.49 8.14 -2.39 -0.02 -0.51 16 37 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 38 H 0.26 -2.80 8.06 -2.91 -0.02 -2.82 16 39 H 0.45 -5.19 8.28 -92.71 -0.77 -5.96 16 40 H 0.07 -0.45 8.14 -2.39 -0.02 -0.47 16 41 H 0.07 -0.65 7.52 -2.39 -0.02 -0.67 16 42 H 0.08 -0.66 8.14 -2.39 -0.02 -0.68 16 43 H 0.06 -0.13 8.14 -2.39 -0.02 -0.15 16 44 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 45 H 0.10 -0.86 8.14 -2.38 -0.02 -0.88 16 46 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 47 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 Total: 0.00 -28.61 374.35 -2.27 -30.88 By element: Atomic # 1 Polarization: -24.73 SS G_CDS: -1.92 Total: -26.65 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: 6.08 Total: 7.76 kcal Atomic # 7 Polarization: 0.24 SS G_CDS: -6.52 Total: -6.28 kcal Atomic # 8 Polarization: -5.42 SS G_CDS: -1.96 Total: -7.38 kcal Atomic # 14 Polarization: -0.38 SS G_CDS: 2.05 Total: 1.67 kcal Total: -28.61 -2.27 -30.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16624780_15413834.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.094 kcal (2) G-P(sol) polarization free energy of solvation -28.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds