Wall clock time and date at job start Sun Mar 7 2021 05:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42908 * 1 3 3 Si 1.86300 * 109.46964 * 2 1 4 4 C 1.50696 * 109.47374 * 239.99663 * 2 1 3 5 5 C 1.31119 * 118.54395 * 110.41332 * 4 2 1 6 6 N 1.38931 * 121.84672 * 179.61406 * 5 4 2 7 7 C 1.47026 * 118.88220 * 13.29955 * 6 5 4 8 8 C 1.53493 * 107.50800 * 316.25039 * 7 6 5 9 9 C 1.50195 * 118.54999 * 290.39688 * 4 2 1 10 10 C 1.50706 * 109.32915 * 320.31164 * 9 4 2 11 11 O 1.21273 * 119.99940 * 276.77002 * 10 9 4 12 12 N 1.34774 * 119.99887 * 96.77014 * 10 9 4 13 13 C 1.46498 * 119.99782 * 174.80844 * 12 10 9 14 14 H 1.08997 * 109.47387 * 35.00675 * 13 12 10 15 15 C 1.53002 * 109.47065 * 154.99587 * 13 12 10 16 16 C 1.53001 * 109.47471 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.47452 * 300.00902 * 16 15 13 18 18 H 1.09002 * 109.46670 * 299.99315 * 17 16 15 19 19 C 1.50701 * 109.47160 * 179.97438 * 17 16 15 20 20 N 1.30516 * 126.34422 * 95.00002 * 19 17 16 21 21 N 1.28598 * 109.66893 * 179.97438 * 20 19 17 22 22 C 1.30512 * 109.67519 * 0.02562 * 21 20 19 23 23 N 1.35487 * 126.34592 * 274.99641 * 19 17 16 24 24 C 1.52997 * 109.47225 * 59.99282 * 17 16 15 25 25 C 1.52998 * 109.47547 * 274.99681 * 13 12 10 26 26 H 0.96701 * 113.99764 * 60.00280 * 1 2 3 27 27 H 1.09003 * 109.46670 * 119.99889 * 2 1 3 28 28 H 1.48502 * 109.99912 * 298.67581 * 3 2 1 29 29 H 1.48503 * 109.99838 * 59.99588 * 3 2 1 30 30 H 1.08005 * 119.07636 * 359.59937 * 5 4 2 31 31 H 0.96993 * 120.55362 * 193.27650 * 6 5 4 32 32 H 1.09007 * 109.82190 * 75.87035 * 7 6 5 33 33 H 1.08998 * 109.82007 * 196.73036 * 7 6 5 34 34 H 1.08998 * 109.75113 * 301.40482 * 8 7 6 35 35 H 1.08993 * 109.46769 * 180.85742 * 8 7 6 36 36 H 1.09009 * 109.33317 * 79.96250 * 9 4 2 37 37 H 0.97000 * 120.00022 * 354.81156 * 12 10 9 38 38 H 1.09007 * 109.46630 * 60.00468 * 15 13 12 39 39 H 1.09001 * 109.47519 * 300.00494 * 15 13 12 40 40 H 1.08999 * 109.47450 * 180.02562 * 16 15 13 41 41 H 1.09002 * 109.46624 * 60.00245 * 16 15 13 42 42 H 1.08004 * 126.35120 * 179.97438 * 22 21 20 43 43 H 0.97007 * 126.97935 * 0.26415 * 23 19 17 44 44 H 1.09002 * 109.47270 * 60.00400 * 24 17 16 45 45 H 1.09001 * 109.47225 * 180.02562 * 24 17 16 46 46 H 1.08992 * 109.47184 * 300.00670 * 25 13 12 47 47 H 1.09011 * 109.46529 * 60.00252 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9315 -0.7105 -1.2304 5 6 2.5191 -0.0040 -2.1657 6 7 3.0148 -0.5894 -3.3240 7 6 2.6235 -1.9697 -3.6457 8 6 2.7127 -2.7887 -2.3506 9 6 1.7373 -2.1964 -1.3308 10 6 1.9830 -2.8238 0.0172 11 8 3.1147 -3.0803 0.3694 12 7 0.9450 -3.0999 0.8313 13 6 1.1715 -3.8123 2.0912 14 1 2.1314 -3.5118 2.5110 15 6 0.0538 -3.4704 3.0785 16 6 0.2900 -4.2149 4.3941 17 6 0.2964 -5.7224 4.1331 18 1 -0.6636 -6.0225 3.7131 19 6 0.5297 -6.4556 5.4288 20 7 -0.3885 -6.9453 6.2166 21 7 0.1665 -7.5054 7.2325 22 6 1.4638 -7.3979 7.1392 23 7 1.7314 -6.7287 5.9919 24 6 1.4142 -6.0643 3.1458 25 6 1.1782 -5.3199 1.8306 26 1 -0.3933 0.4417 -0.7651 27 1 1.7923 -0.5138 0.8900 28 1 1.5880 2.4585 -1.2243 29 1 1.5614 2.4679 1.2085 30 1 2.6204 1.0629 -2.0320 31 1 3.6088 -0.0957 -3.9107 32 1 1.6021 -1.9852 -4.0262 33 1 3.3023 -2.3818 -4.3924 34 1 3.7275 -2.7435 -1.9554 35 1 2.4429 -3.8244 -2.5565 36 1 0.7149 -2.4063 -1.6455 37 1 0.0479 -2.8269 0.5829 38 1 -0.9063 -3.7709 2.6587 39 1 0.0489 -2.3963 3.2642 40 1 -0.5065 -3.9717 5.0973 41 1 1.2500 -3.9148 4.8140 42 1 2.1897 -7.7728 7.8457 43 1 2.6056 -6.4900 5.6459 44 1 2.3742 -5.7642 3.5657 45 1 1.4185 -7.1382 2.9594 46 1 0.2183 -5.6204 1.4108 47 1 1.9746 -5.5635 1.1272 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16624780_15608500.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:35:36 Heat of formation + Delta-G solvation = 19.736195 kcal Electronic energy + Delta-G solvation = -29671.955869 eV Core-core repulsion = 25664.076622 eV Total energy + Delta-G solvation = -4007.879246 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.15805 -41.52235 -39.99890 -38.80773 -37.56783 -35.63158 -34.56907 -33.53682 -32.73965 -32.20245 -31.89074 -29.63565 -27.16374 -26.01029 -24.55163 -24.00864 -23.30787 -23.13837 -22.19187 -21.45195 -20.94659 -19.31245 -19.25029 -18.98389 -17.99643 -17.34515 -17.20714 -16.85496 -16.65286 -16.38083 -16.05357 -15.76959 -15.56443 -15.27748 -15.18798 -14.93758 -14.67757 -14.33984 -14.18465 -14.10585 -13.90626 -13.58844 -13.29319 -13.16008 -12.83610 -12.65267 -12.40659 -12.32079 -12.26717 -12.20398 -11.88768 -11.84370 -11.68015 -11.65854 -11.51274 -11.35991 -11.27392 -10.64155 -10.34634 -10.26039 -9.97225 -8.43095 -4.90761 0.85005 1.29940 1.35928 1.52115 1.74424 1.83914 1.88687 1.95130 2.30614 2.68540 3.16341 3.49240 3.55223 3.65042 3.75444 3.84381 3.87013 3.93813 4.00936 4.13243 4.20507 4.22341 4.32410 4.33321 4.37158 4.39719 4.42253 4.43015 4.50661 4.61619 4.66067 4.71244 4.77799 4.78911 4.86345 4.99403 5.01243 5.02706 5.07161 5.15239 5.22885 5.25449 5.30070 5.32316 5.46593 5.60993 6.23100 6.33742 6.62699 6.67214 6.97640 7.34088 7.69700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.053 4.053 3 Si 0.738 3.262 4 C -0.288 4.288 5 C 0.156 3.844 6 N -0.746 5.746 7 C 0.123 3.877 8 C -0.125 4.125 9 C -0.033 4.033 10 C 0.529 3.471 11 O -0.579 6.579 12 N -0.716 5.716 13 C 0.145 3.855 14 H 0.072 0.928 15 C -0.115 4.115 16 C -0.100 4.100 17 C 0.004 3.996 18 H 0.107 0.893 19 C 0.193 3.807 20 N -0.343 5.343 21 N -0.355 5.355 22 C 0.170 3.830 23 N -0.569 5.569 24 C -0.106 4.106 25 C -0.119 4.119 26 H 0.384 0.616 27 H 0.090 0.910 28 H -0.269 1.269 29 H -0.310 1.310 30 H 0.145 0.855 31 H 0.413 0.587 32 H 0.068 0.932 33 H 0.099 0.901 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.411 0.589 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.262 0.738 43 H 0.445 0.555 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.078 0.922 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.508 2.463 -7.025 8.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.354 6.354 2 C -0.164 4.164 3 Si 0.644 3.356 4 C -0.299 4.299 5 C 0.033 3.967 6 N -0.376 5.376 7 C -0.002 4.002 8 C -0.164 4.164 9 C -0.054 4.054 10 C 0.317 3.683 11 O -0.458 6.458 12 N -0.366 5.366 13 C 0.040 3.960 14 H 0.090 0.910 15 C -0.153 4.153 16 C -0.140 4.140 17 C -0.017 4.017 18 H 0.125 0.875 19 C -0.078 4.078 20 N -0.183 5.183 21 N -0.193 5.193 22 C -0.121 4.121 23 N -0.183 5.183 24 C -0.145 4.145 25 C -0.158 4.158 26 H 0.233 0.767 27 H 0.108 0.892 28 H -0.195 1.195 29 H -0.239 1.239 30 H 0.162 0.838 31 H 0.249 0.751 32 H 0.086 0.914 33 H 0.117 0.883 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.114 0.886 37 H 0.248 0.752 38 H 0.102 0.898 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.278 0.722 43 H 0.289 0.711 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.096 0.904 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.619 2.214 -5.648 7.064 hybrid contribution 0.335 0.471 -0.934 1.099 sum 3.954 2.685 -6.582 8.134 Atomic orbital electron populations 1.86511 1.18514 1.80174 1.50182 1.24711 0.83540 1.10027 0.98110 0.94285 0.91346 0.73412 0.76538 1.20349 1.16725 0.93720 0.99153 1.20652 0.92545 0.96968 0.86544 1.44665 1.53652 1.15006 1.24276 1.21660 1.01328 0.81267 0.95917 1.21776 0.99539 0.99672 0.95398 1.19637 1.01333 0.92752 0.91685 1.20807 0.84286 0.76444 0.86790 1.90660 1.23903 1.54893 1.76375 1.46108 1.11045 1.58367 1.21128 1.20956 0.99518 0.91468 0.84041 0.91030 1.21701 0.98639 1.00906 0.94083 1.21463 1.03012 0.91896 0.97591 1.19797 1.01987 0.93857 0.86075 0.87534 1.25153 0.81911 1.01382 0.99394 1.74188 1.27985 1.14355 1.01779 1.74185 1.06769 1.20327 1.18052 1.27297 0.96323 0.97690 0.90753 1.44090 1.10972 1.43849 1.19386 1.21522 0.97563 1.00971 0.94426 1.21796 1.02839 0.94121 0.97029 0.76658 0.89199 1.19541 1.23925 0.83843 0.75070 0.91379 0.88267 0.91846 0.90080 0.88577 0.75219 0.89776 0.90758 0.91206 0.91165 0.72227 0.71113 0.90736 0.90690 0.90381 0.92304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.44 12.88 -148.98 -1.92 -1.48 16 2 C -0.05 0.02 2.40 71.23 0.17 0.19 16 3 Si 0.74 -1.05 29.95 68.60 2.05 1.01 16 4 C -0.29 0.37 5.03 -16.77 -0.08 0.28 16 5 C 0.16 -0.56 9.61 83.41 0.80 0.24 16 6 N -0.75 4.27 5.83 -345.97 -2.02 2.25 16 7 C 0.12 -0.76 7.16 86.44 0.62 -0.14 16 8 C -0.13 0.21 5.31 30.77 0.16 0.37 16 9 C -0.03 0.03 2.69 -12.43 -0.03 -0.01 16 10 C 0.53 1.73 5.22 87.66 0.46 2.19 16 11 O -0.58 -6.29 15.75 -3.01 -0.05 -6.34 16 12 N -0.72 0.77 5.07 -442.54 -2.24 -1.48 16 13 C 0.14 -0.26 2.50 44.99 0.11 -0.15 16 14 H 0.07 0.16 7.51 -2.39 -0.02 0.14 16 15 C -0.12 0.48 5.39 30.60 0.16 0.64 16 16 C -0.10 0.32 5.19 30.59 0.16 0.47 16 17 C 0.00 -0.01 2.66 -11.54 -0.03 -0.04 16 18 H 0.11 -0.16 8.14 -2.39 -0.02 -0.18 16 19 C 0.19 0.56 6.99 137.98 0.96 1.52 16 20 N -0.34 -4.10 12.21 -50.16 -0.61 -4.71 16 21 N -0.35 -3.99 12.21 -59.99 -0.73 -4.72 16 22 C 0.17 0.04 13.19 180.12 2.37 2.41 16 23 N -0.57 1.66 5.96 -189.87 -1.13 0.53 16 24 C -0.11 0.51 4.97 30.58 0.15 0.66 16 25 C -0.12 0.36 5.49 30.58 0.17 0.53 16 26 H 0.38 -2.44 8.70 -74.06 -0.64 -3.09 16 27 H 0.09 0.26 6.88 -2.39 -0.02 0.25 16 28 H -0.27 0.05 6.84 99.48 0.68 0.73 16 29 H -0.31 -2.27 7.11 99.48 0.71 -1.56 16 30 H 0.14 -0.90 4.31 -2.91 -0.01 -0.91 16 31 H 0.41 -3.93 8.96 -92.71 -0.83 -4.76 16 32 H 0.07 -0.48 8.14 -2.38 -0.02 -0.50 16 33 H 0.10 -0.91 8.14 -2.39 -0.02 -0.93 16 34 H 0.06 0.23 7.52 -2.39 -0.02 0.21 16 35 H 0.08 -0.25 8.14 -2.39 -0.02 -0.27 16 36 H 0.10 -0.33 8.11 -2.38 -0.02 -0.35 16 37 H 0.41 -1.61 8.58 -92.71 -0.80 -2.40 16 38 H 0.08 -0.47 8.14 -2.38 -0.02 -0.49 16 39 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 40 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 41 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 42 H 0.26 -2.57 8.06 -2.91 -0.02 -2.59 16 43 H 0.45 -4.56 8.29 -92.70 -0.77 -5.33 16 44 H 0.07 -0.49 7.52 -2.39 -0.02 -0.51 16 45 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 46 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 47 H 0.06 0.04 8.14 -2.38 -0.02 0.02 16 Total: 0.00 -27.07 371.59 -2.48 -29.55 By element: Atomic # 1 Polarization: -21.80 SS G_CDS: -1.99 Total: -23.79 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: 6.16 Total: 9.19 kcal Atomic # 7 Polarization: -1.40 SS G_CDS: -6.74 Total: -8.13 kcal Atomic # 8 Polarization: -5.86 SS G_CDS: -1.97 Total: -7.82 kcal Atomic # 14 Polarization: -1.05 SS G_CDS: 2.05 Total: 1.01 kcal Total: -27.07 -2.48 -29.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16624780_15608500.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.290 kcal (2) G-P(sol) polarization free energy of solvation -27.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds