Wall clock time and date at job start Sun Mar 7 2021 05:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86298 * 109.47605 * 2 1 4 4 C 1.50699 * 109.47249 * 239.99737 * 2 1 3 5 5 C 1.34499 * 125.49525 * 150.02384 * 4 2 1 6 6 C 1.46750 * 106.37008 * 179.97438 * 5 4 2 7 7 C 1.47262 * 126.97490 * 179.97438 * 6 5 4 8 8 O 1.21620 * 120.00038 * 180.02562 * 7 6 5 9 9 N 1.34781 * 119.99580 * 0.02562 * 7 6 5 10 10 C 1.46501 * 119.99743 * 179.97438 * 9 7 6 11 11 H 1.08996 * 109.46910 * 34.99894 * 10 9 7 12 12 C 1.52995 * 109.46857 * 155.00164 * 10 9 7 13 13 C 1.53004 * 109.47114 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.46886 * 300.00089 * 13 12 10 15 15 H 1.08996 * 109.47042 * 299.99402 * 14 13 12 16 16 C 1.50706 * 109.46610 * 179.97438 * 14 13 12 17 17 N 1.30516 * 126.34441 * 95.02539 * 16 14 13 18 18 N 1.28597 * 109.67419 * 179.97438 * 17 16 14 19 19 C 1.30528 * 109.66761 * 0.02562 * 18 17 16 20 20 N 1.35487 * 126.34577 * 274.70808 * 16 14 13 21 21 C 1.52995 * 109.47317 * 60.00035 * 14 13 12 22 22 C 1.52998 * 109.46840 * 299.99676 * 21 14 13 23 23 C 1.36339 * 106.05601 * 359.97438 * 6 5 4 24 24 C 1.51003 * 126.78745 * 180.02562 * 23 6 5 25 25 C 1.53396 * 108.25269 * 164.33943 * 24 23 6 26 26 C 1.53158 * 109.04520 * 48.45499 * 25 24 23 27 27 C 1.53131 * 109.52843 * 290.42705 * 26 25 24 28 28 N 1.35209 * 108.66562 * 359.76313 * 23 6 5 29 29 H 0.96703 * 114.00176 * 60.00012 * 1 2 3 30 30 H 1.09004 * 109.47449 * 120.00278 * 2 1 3 31 31 H 1.48506 * 109.99834 * 298.68369 * 3 2 1 32 32 H 1.48502 * 110.00011 * 59.99633 * 3 2 1 33 33 H 1.08004 * 126.81682 * 0.02562 * 5 4 2 34 34 H 0.97002 * 120.00059 * 0.02562 * 9 7 6 35 35 H 1.09004 * 109.47402 * 299.99942 * 12 10 9 36 36 H 1.08996 * 109.47581 * 60.00141 * 12 10 9 37 37 H 1.09003 * 109.46827 * 60.00013 * 13 12 10 38 38 H 1.08997 * 109.46912 * 179.97438 * 13 12 10 39 39 H 1.08005 * 126.34015 * 180.02562 * 19 18 17 40 40 H 0.96999 * 126.97929 * 0.03700 * 20 16 14 41 41 H 1.08996 * 109.47581 * 59.99697 * 21 14 13 42 42 H 1.08999 * 109.46806 * 180.02562 * 21 14 13 43 43 H 1.08999 * 109.47489 * 299.99730 * 22 21 14 44 44 H 1.09003 * 109.47282 * 180.02562 * 22 21 14 45 45 H 1.08998 * 109.70748 * 284.02488 * 24 23 6 46 46 H 1.08997 * 109.70686 * 44.65308 * 24 23 6 47 47 H 1.08997 * 109.54243 * 168.32888 * 25 24 23 48 48 H 1.09004 * 109.54108 * 288.59125 * 25 24 23 49 49 H 1.09001 * 109.46574 * 50.44772 * 26 25 24 50 50 H 1.08999 * 109.46276 * 170.41914 * 26 25 24 51 51 H 1.09001 * 109.56712 * 170.83614 * 27 26 25 52 52 H 1.08996 * 109.56492 * 291.06319 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 3.0859 -0.4467 -1.8678 6 6 3.1558 -1.3782 -2.9996 7 6 4.2339 -1.4803 -3.9975 8 8 4.1610 -2.3040 -4.8893 9 7 5.3012 -0.6608 -3.9225 10 6 6.3741 -0.7626 -4.9150 11 1 5.9485 -1.0199 -5.8849 12 6 7.1031 0.5786 -5.0173 13 6 8.2231 0.4724 -6.0542 14 6 9.2119 -0.6143 -5.6274 15 1 9.6379 -0.3573 -4.6576 16 6 10.3148 -0.7192 -6.6491 17 7 11.4765 -0.1268 -6.5969 18 7 12.1692 -0.4398 -7.6341 19 6 11.4804 -1.2458 -8.3955 20 7 10.2863 -1.4508 -7.7892 21 6 8.4829 -1.9555 -5.5251 22 6 7.3629 -1.8493 -4.4881 23 6 2.0200 -2.1301 -2.9397 24 6 1.6168 -3.2360 -3.8856 25 6 0.4949 -4.0475 -3.2254 26 6 -0.5700 -3.0852 -2.6908 27 6 -0.0059 -2.3096 -1.4969 28 7 1.2915 -1.7294 -1.8735 29 1 -0.3934 0.4417 -0.7651 30 1 1.7923 -0.5139 0.8900 31 1 1.5879 2.4585 -1.2243 32 1 1.5615 2.4679 1.2085 33 1 3.8171 0.3016 -1.5994 34 1 5.3595 -0.0040 -3.2110 35 1 6.3987 1.3527 -5.3218 36 1 7.5287 0.8358 -4.0474 37 1 7.7971 0.2155 -7.0241 38 1 8.7422 1.4281 -6.1275 39 1 11.8046 -1.6741 -9.3325 40 1 9.5578 -2.0063 -8.1079 41 1 8.0569 -2.2125 -6.4948 42 1 9.1873 -2.7295 -5.2205 43 1 7.7889 -1.5924 -3.5182 44 1 6.8438 -2.8049 -4.4148 45 1 1.2583 -2.8069 -4.8212 46 1 2.4721 -3.8827 -4.0809 47 1 0.0465 -4.7153 -3.9610 48 1 0.9041 -4.6325 -2.4017 49 1 -0.8547 -2.3856 -3.4766 50 1 -1.4457 -3.6519 -2.3745 51 1 -0.6975 -1.5145 -1.2184 52 1 0.1308 -2.9865 -0.6536 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16624780_16915396.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:35:39 Heat of formation + Delta-G solvation = 39.249723 kcal Electronic energy + Delta-G solvation = -34207.307848 eV Core-core repulsion = 29788.284872 eV Total energy + Delta-G solvation = -4419.022976 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 372.195 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -44.12202 -42.77047 -40.73423 -39.06176 -38.08199 -36.89562 -35.57549 -34.52451 -33.50603 -32.34200 -31.81176 -31.15081 -30.04675 -28.92331 -26.56012 -24.95848 -24.66670 -24.12810 -23.54611 -23.03994 -22.01636 -21.75691 -21.13792 -20.71752 -19.58023 -19.27308 -18.86631 -17.46173 -17.23661 -16.84452 -16.70261 -16.56407 -16.32769 -16.15376 -16.00639 -15.61991 -15.34262 -15.26654 -15.10488 -15.04128 -14.83128 -14.68484 -14.52400 -14.29343 -13.96768 -13.82562 -13.60601 -13.21933 -13.17715 -12.83146 -12.77234 -12.41343 -12.32701 -12.21180 -12.14976 -12.13263 -12.00701 -11.82485 -11.81154 -11.75551 -11.59086 -11.46203 -11.23828 -10.85722 -10.78567 -10.22118 -9.99753 -9.52398 -9.02457 -4.89107 0.75792 0.88487 1.07845 1.46512 1.69732 1.80152 1.87205 1.92244 2.05497 2.44867 2.60495 3.19058 3.21955 3.48223 3.56945 3.60891 3.69063 3.73042 3.78774 3.81779 3.93694 4.00350 4.15971 4.23418 4.27469 4.30618 4.37001 4.39513 4.40575 4.41478 4.44767 4.48780 4.52817 4.55730 4.64735 4.72555 4.76099 4.78022 4.83330 4.85983 4.94947 5.00730 5.06098 5.07558 5.08708 5.15205 5.18196 5.19250 5.21978 5.34409 5.40295 5.66434 5.77019 6.04928 6.23122 6.25715 6.34735 6.76324 7.44044 7.72949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.056 4.056 3 Si 0.803 3.197 4 C -0.020 4.020 5 C -0.159 4.159 6 C -0.255 4.255 7 C 0.591 3.409 8 O -0.588 6.588 9 N -0.711 5.711 10 C 0.149 3.851 11 H 0.069 0.931 12 C -0.116 4.116 13 C -0.101 4.101 14 C 0.003 3.997 15 H 0.110 0.890 16 C 0.193 3.807 17 N -0.343 5.343 18 N -0.354 5.354 19 C 0.168 3.832 20 N -0.570 5.570 21 C -0.106 4.106 22 C -0.120 4.120 23 C 0.100 3.900 24 C -0.052 4.052 25 C -0.125 4.125 26 C -0.134 4.134 27 C 0.095 3.905 28 N -0.429 5.429 29 H 0.385 0.615 30 H 0.129 0.871 31 H -0.290 1.290 32 H -0.299 1.299 33 H 0.185 0.815 34 H 0.414 0.586 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.261 0.739 40 H 0.445 0.555 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.080 0.920 44 H 0.053 0.947 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.088 0.912 48 H 0.065 0.935 49 H 0.071 0.929 50 H 0.106 0.894 51 H 0.112 0.888 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.848 -1.013 1.220 5.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.164 4.164 3 Si 0.706 3.294 4 C -0.129 4.129 5 C -0.183 4.183 6 C -0.265 4.265 7 C 0.381 3.619 8 O -0.470 6.470 9 N -0.362 5.362 10 C 0.044 3.956 11 H 0.088 0.912 12 C -0.154 4.154 13 C -0.140 4.140 14 C -0.018 4.018 15 H 0.128 0.872 16 C -0.078 4.078 17 N -0.182 5.182 18 N -0.193 5.193 19 C -0.123 4.123 20 N -0.184 5.184 21 C -0.145 4.145 22 C -0.159 4.159 23 C -0.019 4.019 24 C -0.090 4.090 25 C -0.163 4.163 26 C -0.171 4.171 27 C -0.025 4.025 28 N -0.105 5.105 29 H 0.235 0.765 30 H 0.147 0.853 31 H -0.217 1.217 32 H -0.226 1.226 33 H 0.202 0.798 34 H 0.251 0.749 35 H 0.100 0.900 36 H 0.110 0.890 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.276 0.724 40 H 0.288 0.712 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.099 0.901 44 H 0.072 0.928 45 H 0.098 0.902 46 H 0.100 0.900 47 H 0.107 0.893 48 H 0.084 0.916 49 H 0.090 0.910 50 H 0.124 0.876 51 H 0.130 0.870 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.055 -0.235 1.832 4.456 hybrid contribution -2.249 -1.177 -1.030 2.739 sum -6.304 -1.412 0.802 6.509 Atomic orbital electron populations 1.86566 1.18471 1.79843 1.50416 1.25052 0.83221 1.11850 0.96287 0.93473 0.89885 0.69777 0.76226 1.20962 0.96590 0.95359 0.99957 1.22027 0.98289 1.02524 0.95412 1.20023 0.98068 1.05980 1.02430 1.17502 0.81353 0.79908 0.83154 1.90730 1.80358 1.38470 1.37447 1.45701 1.19959 1.38435 1.32111 1.20948 0.86579 0.95980 0.92065 0.91236 1.21736 0.97044 0.95624 1.00974 1.21471 0.95113 0.98161 0.99281 1.19828 0.89499 0.97367 0.95058 0.87231 1.25222 0.97565 0.94422 0.90604 1.74183 1.03165 1.23472 1.17413 1.74192 1.27373 1.15801 1.01921 1.27283 0.83337 0.99379 1.02259 1.44100 1.17400 1.38452 1.18438 1.21526 0.97143 0.95455 1.00405 1.21810 0.95593 0.98915 0.99589 1.20584 0.91995 0.98265 0.91024 1.20413 0.99380 0.93474 0.95709 1.21701 0.95480 0.97924 1.01150 1.21922 0.99389 0.98767 0.97047 1.22412 0.82137 0.99336 0.98571 1.44034 1.17869 1.27161 1.21470 0.76514 0.85349 1.21660 1.22622 0.79805 0.74924 0.89998 0.88980 0.91399 0.90907 0.72356 0.71187 0.90960 0.90991 0.90130 0.92799 0.90241 0.90017 0.89329 0.91607 0.91046 0.87611 0.87034 0.89897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 1.37 10.28 -148.98 -1.53 -0.16 16 2 C -0.06 0.23 3.00 71.24 0.21 0.44 16 3 Si 0.80 -4.48 31.11 68.60 2.13 -2.34 16 4 C -0.02 0.02 6.15 40.99 0.25 0.27 16 5 C -0.16 0.32 9.09 23.64 0.21 0.53 16 6 C -0.26 -0.99 6.28 -19.12 -0.12 -1.11 16 7 C 0.59 3.17 7.77 86.61 0.67 3.85 16 8 O -0.59 -7.20 15.00 -4.09 -0.06 -7.26 16 9 N -0.71 1.45 5.07 -445.96 -2.26 -0.82 16 10 C 0.15 -0.47 2.45 44.99 0.11 -0.36 16 11 H 0.07 0.08 7.58 -2.39 -0.02 0.07 16 12 C -0.12 0.84 5.39 30.59 0.16 1.01 16 13 C -0.10 0.52 5.19 30.60 0.16 0.68 16 14 C 0.00 -0.01 2.66 -11.54 -0.03 -0.04 16 15 H 0.11 -0.34 8.14 -2.39 -0.02 -0.36 16 16 C 0.19 0.41 6.99 137.98 0.96 1.37 16 17 N -0.34 -3.80 12.21 -50.16 -0.61 -4.42 16 18 N -0.35 -3.79 12.21 -59.98 -0.73 -4.52 16 19 C 0.17 -0.02 13.19 180.11 2.37 2.36 16 20 N -0.57 1.86 5.96 -189.86 -1.13 0.73 16 21 C -0.11 0.55 4.97 30.59 0.15 0.70 16 22 C -0.12 0.40 5.50 30.59 0.17 0.57 16 23 C 0.10 0.42 6.57 41.69 0.27 0.69 16 24 C -0.05 -0.16 5.32 30.08 0.16 0.00 16 25 C -0.12 0.25 5.98 30.78 0.18 0.43 16 26 C -0.13 0.60 5.92 30.69 0.18 0.79 16 27 C 0.10 -0.29 6.21 86.32 0.54 0.25 16 28 N -0.43 -0.35 3.11 -493.59 -1.54 -1.89 16 29 H 0.39 -2.66 8.27 -74.06 -0.61 -3.28 16 30 H 0.13 -0.72 7.96 -2.38 -0.02 -0.73 16 31 H -0.29 -0.04 7.11 99.48 0.71 0.67 16 32 H -0.30 -0.55 7.11 99.48 0.71 0.15 16 33 H 0.18 -1.83 6.52 -2.91 -0.02 -1.85 16 34 H 0.41 -3.19 7.73 -92.71 -0.72 -3.91 16 35 H 0.08 -0.61 8.14 -2.38 -0.02 -0.63 16 36 H 0.09 -0.91 8.14 -2.39 -0.02 -0.92 16 37 H 0.07 -0.36 8.14 -2.39 -0.02 -0.38 16 38 H 0.07 -0.23 8.14 -2.39 -0.02 -0.24 16 39 H 0.26 -2.59 8.06 -2.91 -0.02 -2.61 16 40 H 0.44 -4.61 8.27 -92.71 -0.77 -5.38 16 41 H 0.07 -0.48 7.51 -2.39 -0.02 -0.50 16 42 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 43 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 44 H 0.05 0.09 8.14 -2.39 -0.02 0.07 16 45 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 46 H 0.08 0.53 7.40 -2.39 -0.02 0.51 16 47 H 0.09 -0.35 8.14 -2.39 -0.02 -0.37 16 48 H 0.07 -0.08 8.12 -2.38 -0.02 -0.10 16 49 H 0.07 -0.26 8.11 -2.39 -0.02 -0.27 16 50 H 0.11 -0.83 8.14 -2.39 -0.02 -0.85 16 51 H 0.11 -0.55 5.68 -2.39 -0.01 -0.56 16 52 H 0.08 -0.25 8.14 -2.39 -0.02 -0.26 16 Total: 0.00 -30.26 406.71 -0.19 -30.44 By element: Atomic # 1 Polarization: -21.11 SS G_CDS: -1.08 Total: -22.20 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: 6.63 Total: 12.44 kcal Atomic # 7 Polarization: -4.64 SS G_CDS: -6.28 Total: -10.92 kcal Atomic # 8 Polarization: -5.83 SS G_CDS: -1.59 Total: -7.42 kcal Atomic # 14 Polarization: -4.48 SS G_CDS: 2.13 Total: -2.34 kcal Total: -30.26 -0.19 -30.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16624780_16915396.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.691 kcal (2) G-P(sol) polarization free energy of solvation -30.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds