Wall clock time and date at job start Sun Mar 7 2021 05:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86302 * 109.46924 * 2 1 4 4 C 1.50698 * 109.47105 * 120.00079 * 2 1 3 5 5 C 1.38714 * 120.03095 * 74.99897 * 4 2 1 6 6 O 1.35901 * 120.05278 * 0.02562 * 5 4 2 7 7 C 1.42899 * 116.99988 * 179.72429 * 6 5 4 8 8 C 1.50700 * 109.47143 * 179.97438 * 7 6 5 9 9 O 1.21283 * 119.99803 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99675 * 180.27800 * 8 7 6 11 11 C 1.46497 * 119.99525 * 179.72583 * 10 8 7 12 12 H 1.09001 * 109.47884 * 324.99780 * 11 10 8 13 13 C 1.53008 * 109.47335 * 84.99977 * 11 10 8 14 14 C 1.52998 * 109.47363 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47164 * 300.00049 * 14 13 11 16 16 H 1.08994 * 109.47018 * 299.99769 * 15 14 13 17 17 C 1.50698 * 109.46999 * 179.97438 * 15 14 13 18 18 N 1.30527 * 126.34238 * 144.68829 * 17 15 14 19 19 N 1.28596 * 109.67179 * 179.82907 * 18 17 15 20 20 C 1.30521 * 109.66969 * 0.44277 * 19 18 17 21 21 N 1.35489 * 126.35023 * 324.99941 * 17 15 14 22 22 C 1.53005 * 109.47340 * 59.99924 * 15 14 13 23 23 C 1.52998 * 109.46681 * 300.00106 * 22 15 14 24 24 C 1.38750 * 119.88827 * 179.72210 * 5 4 2 25 25 C 1.38126 * 119.94636 * 0.28255 * 24 5 4 26 26 C 1.38287 * 120.05245 * 0.02562 * 25 24 5 27 27 C 1.38168 * 120.02663 * 255.32123 * 4 2 1 28 28 H 0.96700 * 113.99675 * 60.00201 * 1 2 3 29 29 H 1.08994 * 109.47195 * 239.99921 * 2 1 3 30 30 H 1.48501 * 109.99844 * 59.99880 * 3 2 1 31 31 H 1.48500 * 109.99847 * 181.31570 * 3 2 1 32 32 H 1.09009 * 109.46798 * 59.99543 * 7 6 5 33 33 H 1.08998 * 109.46844 * 300.00048 * 7 6 5 34 34 H 0.97000 * 119.99894 * 359.71837 * 10 8 7 35 35 H 1.08998 * 109.46811 * 299.99762 * 13 11 10 36 36 H 1.08994 * 109.47201 * 59.99659 * 13 11 10 37 37 H 1.08994 * 109.47128 * 179.97438 * 14 13 11 38 38 H 1.09008 * 109.46993 * 59.99674 * 14 13 11 39 39 H 1.08011 * 126.34395 * 179.73338 * 20 19 18 40 40 H 0.97000 * 126.97862 * 359.97438 * 21 17 15 41 41 H 1.08998 * 109.47131 * 180.02562 * 22 15 14 42 42 H 1.09002 * 109.46899 * 59.99933 * 22 15 14 43 43 H 1.09002 * 109.47313 * 299.99574 * 23 22 15 44 44 H 1.09006 * 109.47016 * 180.02562 * 23 22 15 45 45 H 1.08003 * 120.02348 * 180.29757 * 24 5 4 46 46 H 1.07998 * 119.97092 * 179.97438 * 25 24 5 47 47 H 1.08006 * 119.93930 * 179.97438 * 26 25 24 48 48 H 1.08006 * 119.97516 * 359.97438 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.8697 -2.0941 1.3070 6 8 1.3568 -2.8107 0.2725 7 6 1.3302 -4.2320 0.4181 8 6 0.7319 -4.8525 -0.8181 9 8 0.3641 -4.1470 -1.7335 10 7 0.6000 -6.1911 -0.9039 11 6 0.0129 -6.7938 -2.1031 12 1 -0.7679 -6.1408 -2.4930 13 6 1.0992 -6.9800 -3.1644 14 6 0.4861 -7.6101 -4.4167 15 6 -0.1169 -8.9702 -4.0601 16 1 0.6640 -9.6229 -3.6702 17 6 -0.7213 -9.5905 -5.2934 18 7 -0.7378 -10.8612 -5.5914 19 7 -1.3380 -11.0345 -6.7154 20 6 -1.7234 -9.8814 -7.1900 21 7 -1.3430 -8.9321 -6.3012 22 6 -1.2032 -8.7842 -2.9988 23 6 -0.5901 -8.1541 -1.7467 24 6 2.3383 -2.7455 2.4389 25 6 2.8596 -2.0148 3.4888 26 6 2.9141 -0.6351 3.4127 27 6 2.4476 0.0163 2.2861 28 1 -0.3933 0.4417 -0.7651 29 1 1.7924 -0.5138 -0.8899 30 1 1.5614 2.4679 1.2085 31 1 3.5346 1.7703 -0.0320 32 1 0.7262 -4.4971 1.2860 33 1 2.3461 -4.6022 0.5556 34 1 0.8939 -6.7553 -0.1716 35 1 1.5291 -6.0110 -3.4181 36 1 1.8799 -7.6330 -2.7746 37 1 1.2599 -7.7423 -5.1728 38 1 -0.2949 -6.9573 -4.8067 39 1 -2.2483 -9.7147 -8.1192 40 1 -1.4869 -7.9755 -6.3718 41 1 -1.6325 -9.7532 -2.7445 42 1 -1.9842 -8.1314 -3.3889 43 1 0.1909 -8.8068 -1.3566 44 1 -1.3639 -8.0219 -0.9903 45 1 2.2958 -3.8230 2.4988 46 1 3.2241 -2.5214 4.3702 47 1 3.3216 -0.0656 4.2349 48 1 2.4915 1.0940 2.2290 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16624780_2989392.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:35:45 Heat of formation + Delta-G solvation = 1.198458 kcal Electronic energy + Delta-G solvation = -31323.724704 eV Core-core repulsion = 26960.870658 eV Total energy + Delta-G solvation = -4362.854046 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.168 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -44.13271 -41.68521 -40.96676 -39.49299 -38.36197 -37.37254 -35.81054 -34.59618 -32.97067 -32.60690 -32.11516 -31.34737 -30.21731 -28.72800 -26.59815 -24.89779 -24.26398 -23.67788 -23.23209 -22.49809 -22.19057 -21.62882 -21.05666 -19.40137 -19.37359 -18.45121 -18.28096 -17.50097 -17.42059 -17.08644 -16.82495 -16.81296 -16.40520 -16.19435 -15.75031 -15.64782 -15.40522 -15.26417 -15.05465 -14.91744 -14.71919 -14.24096 -13.99457 -13.96812 -13.70245 -13.56592 -13.48096 -12.98442 -12.86643 -12.71466 -12.56109 -12.47336 -12.35895 -12.22372 -11.88366 -11.87851 -11.82088 -11.73476 -11.64002 -11.31913 -10.91529 -10.27139 -10.18779 -10.14854 -10.03946 -9.25888 -4.93624 0.15482 0.35621 0.80477 1.34574 1.37113 1.42627 1.67393 1.76261 1.91660 1.99024 2.46742 2.60726 3.05302 3.29282 3.41543 3.45080 3.50765 3.64450 3.68894 3.76852 3.78708 3.83633 3.88496 3.91299 3.98073 4.06562 4.09966 4.13508 4.17015 4.20181 4.27213 4.32084 4.42545 4.44247 4.47059 4.57786 4.58551 4.77045 4.80212 4.85155 4.86237 4.91025 5.02618 5.07902 5.11205 5.19457 5.26838 5.28531 5.42174 5.61902 6.02718 6.16598 6.31531 6.79186 7.02314 7.75101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.541 6.541 2 C -0.061 4.061 3 Si 0.682 3.318 4 C -0.103 4.103 5 C 0.153 3.847 6 O -0.277 6.277 7 C 0.037 3.963 8 C 0.518 3.482 9 O -0.509 6.509 10 N -0.725 5.725 11 C 0.146 3.854 12 H 0.092 0.908 13 C -0.128 4.128 14 C -0.115 4.115 15 C -0.003 4.003 16 H 0.110 0.890 17 C 0.185 3.815 18 N -0.291 5.291 19 N -0.296 5.296 20 C 0.154 3.846 21 N -0.581 5.581 22 C -0.107 4.107 23 C -0.126 4.126 24 C -0.211 4.211 25 C -0.072 4.072 26 C -0.151 4.151 27 C -0.084 4.084 28 H 0.380 0.620 29 H 0.074 0.926 30 H -0.250 1.250 31 H -0.255 1.255 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.403 0.597 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.223 0.777 40 H 0.429 0.571 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.132 0.868 46 H 0.131 0.869 47 H 0.130 0.870 48 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.649 2.183 1.057 2.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.347 6.347 2 C -0.172 4.172 3 Si 0.584 3.416 4 C -0.103 4.103 5 C 0.107 3.893 6 O -0.189 6.189 7 C -0.042 4.042 8 C 0.303 3.697 9 O -0.382 6.382 10 N -0.379 5.379 11 C 0.042 3.958 12 H 0.110 0.890 13 C -0.167 4.167 14 C -0.154 4.154 15 C -0.024 4.024 16 H 0.128 0.872 17 C -0.084 4.084 18 N -0.131 5.131 19 N -0.135 5.135 20 C -0.135 4.135 21 N -0.194 5.194 22 C -0.146 4.146 23 C -0.164 4.164 24 C -0.229 4.229 25 C -0.090 4.090 26 C -0.169 4.169 27 C -0.101 4.101 28 H 0.227 0.773 29 H 0.092 0.908 30 H -0.175 1.175 31 H -0.179 1.179 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.237 0.763 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.239 0.761 40 H 0.269 0.731 41 H 0.099 0.901 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.150 0.850 46 H 0.149 0.851 47 H 0.147 0.853 48 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.114 1.384 1.262 2.179 hybrid contribution -0.068 0.797 0.450 0.918 sum 1.046 2.181 1.712 2.963 Atomic orbital electron populations 1.86502 1.17074 1.81917 1.49233 1.24512 0.85933 1.09612 0.97138 0.95243 0.80873 0.78455 0.87068 1.18685 1.04629 0.90379 0.96641 1.18739 0.93051 0.90673 0.86839 1.86206 1.77419 1.16782 1.38485 1.22493 1.02533 0.81413 0.97719 1.19999 0.79094 0.82480 0.88135 1.90777 1.47139 1.61043 1.39284 1.45876 1.64769 1.06228 1.21004 1.21057 0.95659 0.94402 0.84688 0.89028 1.21904 0.98247 1.01924 0.94604 1.21599 1.00774 0.94514 0.98466 1.19782 0.97878 0.96513 0.88235 0.87157 1.24848 0.99853 0.90042 0.93634 1.74307 1.17055 1.13065 1.08711 1.74309 1.12531 1.21864 1.04817 1.26594 1.03487 0.84872 0.98522 1.44135 1.44939 1.12221 1.18071 1.21532 0.97038 1.02114 0.93901 1.21810 1.01230 0.95087 0.98234 1.21292 1.06301 1.00477 0.94863 1.21020 0.96318 0.93913 0.97752 1.21043 1.02729 0.94722 0.98392 1.20891 0.97327 0.99267 0.92657 0.77311 0.90806 1.17531 1.17939 0.88784 0.88858 0.76295 0.90603 0.90921 0.90641 0.91627 0.76090 0.73107 0.90067 0.91401 0.90490 0.90374 0.85035 0.85121 0.85252 0.85452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.53 12.86 -35.23 -0.45 -1.98 16 2 C -0.06 -0.14 2.37 36.00 0.09 -0.06 16 3 Si 0.68 0.10 30.21 -169.99 -5.14 -5.04 16 4 C -0.10 -0.38 5.30 -104.47 -0.55 -0.93 16 5 C 0.15 0.47 6.66 -39.22 -0.26 0.21 16 6 O -0.28 -0.92 9.00 -39.34 -0.35 -1.27 16 7 C 0.04 -0.04 5.22 36.01 0.19 0.15 16 8 C 0.52 0.25 7.87 -10.98 -0.09 0.16 16 9 O -0.51 -2.57 16.16 -14.36 -0.23 -2.80 16 10 N -0.73 2.12 5.08 -53.80 -0.27 1.85 16 11 C 0.15 -0.40 2.46 -67.93 -0.17 -0.56 16 12 H 0.09 -0.07 7.58 -51.93 -0.39 -0.46 16 13 C -0.13 0.35 5.49 -26.73 -0.15 0.20 16 14 C -0.11 0.37 4.97 -26.73 -0.13 0.23 16 15 C 0.00 0.01 2.66 -91.77 -0.24 -0.24 16 16 H 0.11 -0.24 8.14 -51.93 -0.42 -0.66 16 17 C 0.19 0.08 6.99 -154.99 -1.08 -1.00 16 18 N -0.29 -1.33 12.21 32.80 0.40 -0.93 16 19 N -0.30 -1.34 12.21 29.69 0.36 -0.98 16 20 C 0.15 -0.03 13.19 -89.95 -1.19 -1.22 16 21 N -0.58 1.06 5.96 -11.36 -0.07 1.00 16 22 C -0.11 0.33 5.18 -26.73 -0.14 0.19 16 23 C -0.13 0.52 5.39 -26.73 -0.14 0.38 16 24 C -0.21 -0.15 9.04 -39.43 -0.36 -0.51 16 25 C -0.07 -0.03 10.04 -39.60 -0.40 -0.43 16 26 C -0.15 -0.20 10.04 -39.56 -0.40 -0.60 16 27 C -0.08 -0.24 8.66 -39.60 -0.34 -0.58 16 28 H 0.38 -0.78 8.74 45.56 0.40 -0.38 16 29 H 0.07 0.16 7.83 -51.93 -0.41 -0.24 16 30 H -0.25 -0.62 6.74 56.52 0.38 -0.24 16 31 H -0.25 -0.62 7.11 56.52 0.40 -0.22 16 32 H 0.09 -0.29 7.66 -51.92 -0.40 -0.69 16 33 H 0.09 -0.33 7.66 -51.93 -0.40 -0.73 16 34 H 0.40 -2.37 8.60 -40.82 -0.35 -2.72 16 35 H 0.08 -0.05 8.14 -51.93 -0.42 -0.48 16 36 H 0.07 -0.24 8.14 -51.93 -0.42 -0.66 16 37 H 0.07 -0.21 8.14 -51.93 -0.42 -0.63 16 38 H 0.07 -0.25 7.52 -51.92 -0.39 -0.64 16 39 H 0.22 -1.00 8.06 -52.48 -0.42 -1.43 16 40 H 0.43 -2.20 8.28 -40.82 -0.34 -2.54 16 41 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 42 H 0.07 -0.21 8.14 -51.93 -0.42 -0.63 16 43 H 0.08 -0.38 8.14 -51.93 -0.42 -0.81 16 44 H 0.08 -0.32 8.14 -51.93 -0.42 -0.75 16 45 H 0.13 -0.30 6.30 -52.48 -0.33 -0.63 16 46 H 0.13 -0.28 8.06 -52.49 -0.42 -0.70 16 47 H 0.13 -0.10 8.06 -52.48 -0.42 -0.52 16 48 H 0.13 0.28 4.90 -52.48 -0.26 0.02 16 LS Contribution 393.45 15.07 5.93 5.93 Total: 0.00 -14.22 393.45 -11.92 -26.14 By element: Atomic # 1 Polarization: -10.60 SS G_CDS: -6.73 Total: -17.34 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -5.36 Total: -4.58 kcal Atomic # 7 Polarization: 0.52 SS G_CDS: 0.42 Total: 0.94 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: -1.04 Total: -6.05 kcal Atomic # 14 Polarization: 0.10 SS G_CDS: -5.14 Total: -5.04 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -14.22 -11.92 -26.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16624780_2989392.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.340 kcal (2) G-P(sol) polarization free energy of solvation -14.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds