Wall clock time and date at job start Sun Mar 7 2021 05:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86302 * 109.46924 * 2 1 4 4 C 1.50698 * 109.47105 * 120.00079 * 2 1 3 5 5 C 1.38714 * 120.03095 * 74.99897 * 4 2 1 6 6 O 1.35901 * 120.05278 * 0.02562 * 5 4 2 7 7 C 1.42899 * 116.99988 * 179.72429 * 6 5 4 8 8 C 1.50700 * 109.47143 * 179.97438 * 7 6 5 9 9 O 1.21283 * 119.99803 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99675 * 180.27800 * 8 7 6 11 11 C 1.46497 * 119.99525 * 179.72583 * 10 8 7 12 12 H 1.09001 * 109.47884 * 324.99780 * 11 10 8 13 13 C 1.53008 * 109.47335 * 84.99977 * 11 10 8 14 14 C 1.52998 * 109.47363 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47164 * 300.00049 * 14 13 11 16 16 H 1.08994 * 109.47018 * 299.99769 * 15 14 13 17 17 C 1.50698 * 109.46999 * 179.97438 * 15 14 13 18 18 N 1.30527 * 126.34238 * 144.68829 * 17 15 14 19 19 N 1.28596 * 109.67179 * 179.82907 * 18 17 15 20 20 C 1.30521 * 109.66969 * 0.44277 * 19 18 17 21 21 N 1.35489 * 126.35023 * 324.99941 * 17 15 14 22 22 C 1.53005 * 109.47340 * 59.99924 * 15 14 13 23 23 C 1.52998 * 109.46681 * 300.00106 * 22 15 14 24 24 C 1.38750 * 119.88827 * 179.72210 * 5 4 2 25 25 C 1.38126 * 119.94636 * 0.28255 * 24 5 4 26 26 C 1.38287 * 120.05245 * 0.02562 * 25 24 5 27 27 C 1.38168 * 120.02663 * 255.32123 * 4 2 1 28 28 H 0.96700 * 113.99675 * 60.00201 * 1 2 3 29 29 H 1.08994 * 109.47195 * 239.99921 * 2 1 3 30 30 H 1.48501 * 109.99844 * 59.99880 * 3 2 1 31 31 H 1.48500 * 109.99847 * 181.31570 * 3 2 1 32 32 H 1.09009 * 109.46798 * 59.99543 * 7 6 5 33 33 H 1.08998 * 109.46844 * 300.00048 * 7 6 5 34 34 H 0.97000 * 119.99894 * 359.71837 * 10 8 7 35 35 H 1.08998 * 109.46811 * 299.99762 * 13 11 10 36 36 H 1.08994 * 109.47201 * 59.99659 * 13 11 10 37 37 H 1.08994 * 109.47128 * 179.97438 * 14 13 11 38 38 H 1.09008 * 109.46993 * 59.99674 * 14 13 11 39 39 H 1.08011 * 126.34395 * 179.73338 * 20 19 18 40 40 H 0.97000 * 126.97862 * 359.97438 * 21 17 15 41 41 H 1.08998 * 109.47131 * 180.02562 * 22 15 14 42 42 H 1.09002 * 109.46899 * 59.99933 * 22 15 14 43 43 H 1.09002 * 109.47313 * 299.99574 * 23 22 15 44 44 H 1.09006 * 109.47016 * 180.02562 * 23 22 15 45 45 H 1.08003 * 120.02348 * 180.29757 * 24 5 4 46 46 H 1.07998 * 119.97092 * 179.97438 * 25 24 5 47 47 H 1.08006 * 119.93930 * 179.97438 * 26 25 24 48 48 H 1.08006 * 119.97516 * 359.97438 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.8697 -2.0941 1.3070 6 8 1.3568 -2.8107 0.2725 7 6 1.3302 -4.2320 0.4181 8 6 0.7319 -4.8525 -0.8181 9 8 0.3641 -4.1470 -1.7335 10 7 0.6000 -6.1911 -0.9039 11 6 0.0129 -6.7938 -2.1031 12 1 -0.7679 -6.1408 -2.4930 13 6 1.0992 -6.9800 -3.1644 14 6 0.4861 -7.6101 -4.4167 15 6 -0.1169 -8.9702 -4.0601 16 1 0.6640 -9.6229 -3.6702 17 6 -0.7213 -9.5905 -5.2934 18 7 -0.7378 -10.8612 -5.5914 19 7 -1.3380 -11.0345 -6.7154 20 6 -1.7234 -9.8814 -7.1900 21 7 -1.3430 -8.9321 -6.3012 22 6 -1.2032 -8.7842 -2.9988 23 6 -0.5901 -8.1541 -1.7467 24 6 2.3383 -2.7455 2.4389 25 6 2.8596 -2.0148 3.4888 26 6 2.9141 -0.6351 3.4127 27 6 2.4476 0.0163 2.2861 28 1 -0.3933 0.4417 -0.7651 29 1 1.7924 -0.5138 -0.8899 30 1 1.5614 2.4679 1.2085 31 1 3.5346 1.7703 -0.0320 32 1 0.7262 -4.4971 1.2860 33 1 2.3461 -4.6022 0.5556 34 1 0.8939 -6.7553 -0.1716 35 1 1.5291 -6.0110 -3.4181 36 1 1.8799 -7.6330 -2.7746 37 1 1.2599 -7.7423 -5.1728 38 1 -0.2949 -6.9573 -4.8067 39 1 -2.2483 -9.7147 -8.1192 40 1 -1.4869 -7.9755 -6.3718 41 1 -1.6325 -9.7532 -2.7445 42 1 -1.9842 -8.1314 -3.3889 43 1 0.1909 -8.8068 -1.3566 44 1 -1.3639 -8.0219 -0.9903 45 1 2.2958 -3.8230 2.4988 46 1 3.2241 -2.5214 4.3702 47 1 3.3216 -0.0656 4.2349 48 1 2.4915 1.0940 2.2290 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16624780_2989392.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:35:44 Heat of formation + Delta-G solvation = -2.389440 kcal Electronic energy + Delta-G solvation = -31323.880287 eV Core-core repulsion = 26960.870658 eV Total energy + Delta-G solvation = -4363.009629 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.168 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -44.15471 -41.70283 -40.93353 -39.42289 -38.41786 -37.49783 -35.77474 -34.59553 -33.01475 -32.58873 -31.89018 -31.37779 -30.21326 -28.65186 -26.69182 -24.82949 -24.13470 -23.63357 -23.20853 -22.55980 -22.14902 -21.56286 -20.90060 -19.40952 -19.30979 -18.44183 -18.37618 -17.47557 -17.39445 -17.08286 -16.85094 -16.82741 -16.37508 -16.09690 -15.75162 -15.63368 -15.38768 -15.14960 -15.04158 -14.90980 -14.73098 -14.10490 -14.09033 -13.87349 -13.71498 -13.56301 -13.29615 -13.05504 -12.84977 -12.74599 -12.43019 -12.31271 -12.21017 -12.18825 -12.02701 -11.84646 -11.81745 -11.68325 -11.52812 -11.31000 -10.95424 -10.27025 -10.26594 -10.15436 -10.11270 -9.33259 -4.98032 0.08196 0.27965 0.85098 1.27120 1.43919 1.44988 1.60277 1.84106 1.89084 1.89643 2.52540 2.56287 3.15786 3.42875 3.48470 3.59480 3.64614 3.68078 3.84429 3.85696 3.95256 3.97786 4.03229 4.06159 4.12448 4.15868 4.20065 4.22701 4.30934 4.31566 4.39447 4.40037 4.42819 4.49825 4.53831 4.64438 4.78328 4.84928 4.99365 4.99926 5.03615 5.07165 5.15395 5.15493 5.22984 5.24849 5.27806 5.36967 5.43953 5.60987 6.19864 6.22563 6.45850 6.86453 7.12531 7.69760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.563 6.563 2 C -0.077 4.077 3 Si 0.779 3.221 4 C -0.137 4.137 5 C 0.134 3.866 6 O -0.306 6.306 7 C 0.032 3.968 8 C 0.516 3.484 9 O -0.564 6.564 10 N -0.707 5.707 11 C 0.147 3.853 12 H 0.071 0.929 13 C -0.122 4.122 14 C -0.108 4.108 15 C 0.003 3.997 16 H 0.110 0.890 17 C 0.191 3.809 18 N -0.342 5.342 19 N -0.354 5.354 20 C 0.169 3.831 21 N -0.570 5.570 22 C -0.103 4.103 23 C -0.115 4.115 24 C -0.208 4.208 25 C -0.073 4.073 26 C -0.159 4.159 27 C -0.105 4.105 28 H 0.397 0.603 29 H 0.066 0.934 30 H -0.283 1.283 31 H -0.287 1.287 32 H 0.119 0.881 33 H 0.123 0.877 34 H 0.420 0.580 35 H 0.055 0.945 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.261 0.739 40 H 0.445 0.555 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.093 0.907 44 H 0.084 0.916 45 H 0.164 0.836 46 H 0.161 0.839 47 H 0.147 0.853 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.904 1.748 2.156 2.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.372 6.372 2 C -0.185 4.185 3 Si 0.683 3.317 4 C -0.137 4.137 5 C 0.088 3.912 6 O -0.219 6.219 7 C -0.046 4.046 8 C 0.302 3.698 9 O -0.442 6.442 10 N -0.360 5.360 11 C 0.043 3.957 12 H 0.089 0.911 13 C -0.161 4.161 14 C -0.147 4.147 15 C -0.018 4.018 16 H 0.128 0.872 17 C -0.080 4.080 18 N -0.182 5.182 19 N -0.193 5.193 20 C -0.122 4.122 21 N -0.184 5.184 22 C -0.142 4.142 23 C -0.153 4.153 24 C -0.226 4.226 25 C -0.091 4.091 26 C -0.177 4.177 27 C -0.123 4.123 28 H 0.247 0.753 29 H 0.084 0.916 30 H -0.210 1.210 31 H -0.214 1.214 32 H 0.137 0.863 33 H 0.141 0.859 34 H 0.258 0.742 35 H 0.073 0.927 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.277 0.723 40 H 0.288 0.712 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.111 0.889 44 H 0.102 0.898 45 H 0.182 0.818 46 H 0.179 0.821 47 H 0.165 0.835 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.357 0.901 2.364 2.871 hybrid contribution -0.160 0.891 0.124 0.913 sum 1.197 1.791 2.488 3.291 Atomic orbital electron populations 1.86445 1.17617 1.82539 1.50581 1.24816 0.85698 1.11358 0.96660 0.94206 0.77453 0.75228 0.84764 1.19048 1.05745 0.91487 0.97466 1.18969 0.93778 0.90737 0.87678 1.86160 1.77720 1.18844 1.39141 1.22780 1.04592 0.79617 0.97635 1.20365 0.78391 0.83109 0.87965 1.90754 1.49772 1.62432 1.41237 1.45746 1.63472 1.05412 1.21408 1.21026 0.95203 0.94706 0.84773 0.91057 1.21826 0.98434 1.01006 0.94820 1.21533 1.00843 0.94052 0.98224 1.19826 0.97971 0.96546 0.87412 0.87213 1.25218 0.99026 0.89407 0.94332 1.74187 1.19009 1.15339 1.09662 1.74192 1.14817 1.24479 1.05794 1.27295 1.01776 0.83968 0.99133 1.44100 1.44126 1.12968 1.17188 1.21483 0.96816 1.01774 0.94095 1.21737 1.01709 0.94106 0.97760 1.21683 1.04941 1.02160 0.93809 1.21423 0.95460 0.93585 0.98592 1.21369 1.02329 0.95690 0.98294 1.21021 0.98459 0.99309 0.93488 0.75328 0.91582 1.20997 1.21352 0.86300 0.85910 0.74182 0.92664 0.89825 0.90881 0.90923 0.72327 0.71172 0.90851 0.91311 0.88890 0.89770 0.81831 0.82148 0.83509 0.85841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -4.15 12.86 -148.98 -1.92 -6.07 16 2 C -0.08 -0.49 2.37 71.24 0.17 -0.33 16 3 Si 0.78 1.25 30.21 68.60 2.07 3.32 16 4 C -0.14 -1.22 5.30 -19.77 -0.10 -1.32 16 5 C 0.13 0.89 6.66 22.51 0.15 1.04 16 6 O -0.31 -2.27 9.00 -73.40 -0.66 -2.93 16 7 C 0.03 -0.09 5.22 71.24 0.37 0.29 16 8 C 0.52 0.56 7.87 87.66 0.69 1.25 16 9 O -0.56 -6.63 16.16 16.00 0.26 -6.37 16 10 N -0.71 4.74 5.08 -442.52 -2.25 2.49 16 11 C 0.15 -0.85 2.46 44.99 0.11 -0.74 16 12 H 0.07 -0.06 7.58 -2.39 -0.02 -0.08 16 13 C -0.12 0.67 5.49 30.60 0.17 0.84 16 14 C -0.11 0.70 4.97 30.59 0.15 0.85 16 15 C 0.00 -0.02 2.66 -11.54 -0.03 -0.05 16 16 H 0.11 -0.48 8.14 -2.39 -0.02 -0.50 16 17 C 0.19 0.25 6.99 137.98 0.96 1.21 16 18 N -0.34 -3.56 12.21 -50.16 -0.61 -4.17 16 19 N -0.35 -3.59 12.21 -59.98 -0.73 -4.32 16 20 C 0.17 -0.11 13.19 180.11 2.37 2.26 16 21 N -0.57 2.26 5.96 -189.85 -1.13 1.13 16 22 C -0.10 0.67 5.18 30.60 0.16 0.83 16 23 C -0.12 1.09 5.39 30.59 0.16 1.25 16 24 C -0.21 -0.03 9.04 22.37 0.20 0.18 16 25 C -0.07 0.05 10.04 22.25 0.22 0.27 16 26 C -0.16 -0.39 10.04 22.28 0.22 -0.17 16 27 C -0.11 -0.72 8.66 22.25 0.19 -0.53 16 28 H 0.40 -1.05 8.74 -74.06 -0.65 -1.70 16 29 H 0.07 0.45 7.83 -2.39 -0.02 0.43 16 30 H -0.28 -1.87 6.74 99.48 0.67 -1.20 16 31 H -0.29 -1.86 7.11 99.48 0.71 -1.15 16 32 H 0.12 -0.97 7.66 -2.38 -0.02 -0.98 16 33 H 0.12 -1.12 7.66 -2.39 -0.02 -1.14 16 34 H 0.42 -5.82 8.60 -92.71 -0.80 -6.62 16 35 H 0.05 -0.03 8.14 -2.39 -0.02 -0.05 16 36 H 0.08 -0.63 8.14 -2.39 -0.02 -0.65 16 37 H 0.07 -0.40 8.14 -2.39 -0.02 -0.42 16 38 H 0.07 -0.57 7.52 -2.38 -0.02 -0.59 16 39 H 0.26 -2.73 8.06 -2.90 -0.02 -2.75 16 40 H 0.45 -4.93 8.28 -92.71 -0.77 -5.70 16 41 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 42 H 0.07 -0.45 8.14 -2.39 -0.02 -0.47 16 43 H 0.09 -1.12 8.14 -2.39 -0.02 -1.14 16 44 H 0.08 -0.83 8.14 -2.38 -0.02 -0.85 16 45 H 0.16 -1.24 6.30 -2.91 -0.02 -1.25 16 46 H 0.16 -1.14 8.06 -2.91 -0.02 -1.17 16 47 H 0.15 -0.31 8.06 -2.91 -0.02 -0.33 16 48 H 0.12 0.77 4.90 -2.91 -0.01 0.75 16 Total: 0.00 -37.67 393.45 0.03 -37.64 By element: Atomic # 1 Polarization: -26.69 SS G_CDS: -1.19 Total: -27.88 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: 6.18 Total: 7.16 kcal Atomic # 7 Polarization: -0.15 SS G_CDS: -4.72 Total: -4.87 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: -2.32 Total: -15.37 kcal Atomic # 14 Polarization: 1.25 SS G_CDS: 2.07 Total: 3.32 kcal Total: -37.67 0.03 -37.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16624780_2989392.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.251 kcal (2) G-P(sol) polarization free energy of solvation -37.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds