Wall clock time and date at job start Sun Mar 7 2021 05:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86299 * 109.47417 * 2 1 4 4 C 1.50709 * 109.46849 * 119.99811 * 2 1 3 5 5 C 1.38250 * 119.97111 * 245.00009 * 4 2 1 6 6 C 1.38285 * 120.10770 * 179.97438 * 5 4 2 7 7 C 1.38120 * 120.05789 * 0.04068 * 6 5 4 8 8 C 1.38747 * 119.94422 * 359.97438 * 7 6 5 9 9 O 1.35907 * 120.05423 * 180.02562 * 8 7 6 10 10 C 1.42896 * 116.99955 * 359.97438 * 9 8 7 11 11 C 1.53000 * 109.47083 * 180.02562 * 10 9 8 12 12 C 1.50702 * 109.46917 * 180.02562 * 11 10 9 13 13 O 1.21279 * 120.00201 * 359.97438 * 12 11 10 14 14 N 1.34779 * 119.99614 * 180.02562 * 12 11 10 15 15 C 1.46500 * 119.99793 * 179.97438 * 14 12 11 16 16 H 1.09002 * 109.47092 * 34.99824 * 15 14 12 17 17 C 1.52997 * 109.47007 * 154.99772 * 15 14 12 18 18 C 1.52999 * 109.47317 * 179.97438 * 17 15 14 19 19 C 1.53005 * 109.47159 * 300.00546 * 18 17 15 20 20 H 1.09002 * 109.46935 * 299.99411 * 19 18 17 21 21 C 1.50699 * 109.47155 * 179.97438 * 19 18 17 22 22 N 1.30520 * 126.34712 * 94.68268 * 21 19 18 23 23 N 1.28601 * 109.67284 * 179.82673 * 22 21 19 24 24 C 1.30518 * 109.67044 * 0.44904 * 23 22 21 25 25 N 1.35491 * 107.30825 * 359.73059 * 24 23 22 26 26 C 1.52997 * 109.47452 * 59.99536 * 19 18 17 27 27 C 1.53000 * 109.47023 * 274.99565 * 15 14 12 28 28 C 1.38168 * 119.97188 * 65.29647 * 4 2 1 29 29 H 0.96703 * 114.00199 * 300.00512 * 1 2 3 30 30 H 1.08997 * 109.47388 * 239.99482 * 2 1 3 31 31 H 1.48503 * 109.99821 * 299.99928 * 3 2 1 32 32 H 1.48497 * 110.00151 * 61.31428 * 3 2 1 33 33 H 1.07998 * 119.93974 * 359.97438 * 5 4 2 34 34 H 1.07999 * 119.96672 * 180.02562 * 6 5 4 35 35 H 1.08005 * 120.02487 * 179.97438 * 7 6 5 36 36 H 1.09002 * 109.47042 * 60.00274 * 10 9 8 37 37 H 1.09002 * 109.47196 * 300.00645 * 10 9 8 38 38 H 1.09002 * 109.47125 * 60.00120 * 11 10 9 39 39 H 1.09002 * 109.47133 * 299.99844 * 11 10 9 40 40 H 0.97004 * 119.99983 * 359.97438 * 14 12 11 41 41 H 1.08996 * 109.47853 * 300.00060 * 17 15 14 42 42 H 1.09002 * 109.47153 * 60.00089 * 17 15 14 43 43 H 1.09002 * 109.46716 * 60.00091 * 18 17 15 44 44 H 1.09000 * 109.47486 * 180.02562 * 18 17 15 45 45 H 1.08000 * 126.34434 * 179.73267 * 24 23 22 46 46 H 0.97005 * 126.97809 * 179.97438 * 25 24 23 47 47 H 1.09002 * 109.46695 * 59.99734 * 26 19 18 48 48 H 1.08993 * 109.47194 * 179.97438 * 26 19 18 49 49 H 1.08992 * 109.47399 * 300.00063 * 27 15 14 50 50 H 1.09004 * 109.46724 * 60.00549 * 27 15 14 51 51 H 1.07997 * 120.02691 * 0.02562 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2306 5 6 2.6387 -0.0116 2.1911 6 6 3.1004 -0.6605 3.3216 7 6 2.8566 -2.0091 3.4933 8 6 2.1471 -2.7127 2.5306 9 8 1.9054 -4.0397 2.6976 10 6 2.4117 -4.6465 3.8881 11 6 2.0446 -6.1318 3.8993 12 6 2.5779 -6.7716 5.1552 13 8 3.1916 -6.1054 5.9616 14 7 2.3738 -8.0845 5.3816 15 6 2.8927 -8.7066 6.6022 16 1 2.8370 -7.9941 7.4252 17 6 2.0563 -9.9424 6.9400 18 6 2.5986 -10.5925 8.2144 19 6 4.0551 -11.0067 7.9956 20 1 4.1105 -11.7191 7.1725 21 6 4.5895 -11.6465 9.2510 22 7 4.6215 -12.9244 9.5147 23 7 5.1467 -13.1144 10.6731 24 6 5.4647 -11.9658 11.2050 25 7 5.1202 -11.0015 10.3178 26 6 4.8916 -9.7710 7.6577 27 6 4.3493 -9.1209 6.3839 28 6 1.6898 -2.0609 1.3949 29 1 -0.3934 0.4418 0.7650 30 1 1.7924 -0.5139 -0.8899 31 1 1.5616 2.4678 -1.2085 32 1 1.5880 2.4586 1.2241 33 1 2.8309 1.0428 2.0582 34 1 3.6524 -0.1123 4.0707 35 1 3.2178 -2.5155 4.3763 36 1 1.9752 -4.1575 4.7591 37 1 3.4961 -4.5403 3.9173 38 1 2.4813 -6.6206 3.0284 39 1 0.9602 -6.2383 3.8700 40 1 1.8832 -8.6174 4.7363 41 1 1.0185 -9.6474 7.0955 42 1 2.1120 -10.6549 6.1171 43 1 2.5432 -9.8801 9.0376 44 1 2.0029 -11.4731 8.4549 45 1 5.9185 -11.8125 12.1730 46 1 5.2307 -10.0437 10.4248 47 1 4.8361 -9.0586 8.4809 48 1 5.9292 -10.0660 7.5023 49 1 4.4050 -9.8334 5.5610 50 1 4.9452 -8.2404 6.1432 51 1 1.1416 -2.6074 0.6418 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16624780_4549614.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:35:57 Heat of formation + Delta-G solvation = -13.894563 kcal Electronic energy + Delta-G solvation = -32280.991236 eV Core-core repulsion = 27761.945088 eV Total energy + Delta-G solvation = -4519.046147 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 373.183 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -44.15617 -41.45823 -41.03121 -39.49150 -39.03618 -37.38828 -35.75042 -34.58947 -33.47124 -32.50370 -32.26069 -31.88658 -30.85856 -29.52201 -27.05113 -25.69067 -24.44100 -23.95943 -23.69325 -23.25990 -22.24991 -21.92223 -21.42332 -20.81432 -19.37960 -19.30489 -18.21523 -17.73721 -17.49215 -17.47298 -17.13423 -16.85855 -16.80435 -16.38486 -16.28527 -16.08280 -15.82705 -15.51780 -15.20760 -15.04513 -14.85921 -14.71683 -14.46985 -14.13838 -14.11484 -13.99855 -13.64378 -13.29432 -13.24027 -12.95116 -12.86574 -12.83393 -12.42530 -12.40375 -12.27809 -12.20284 -11.96444 -11.84577 -11.81501 -11.67472 -11.56859 -11.51783 -11.31281 -10.98426 -10.65620 -10.26392 -10.09960 -9.96251 -9.28245 -4.90313 0.18938 0.38497 0.85030 1.29492 1.53812 1.61610 1.71118 1.83946 1.89098 1.96636 2.48655 2.64900 3.16650 3.41422 3.51508 3.58273 3.64465 3.65514 3.84099 3.85682 3.89497 3.94082 4.00706 4.08764 4.12989 4.20651 4.22703 4.27654 4.31821 4.32241 4.39858 4.40145 4.42913 4.50415 4.54201 4.62774 4.67223 4.68408 4.77711 4.79050 4.97225 5.00244 5.00648 5.03523 5.08113 5.15686 5.25017 5.25518 5.30479 5.37186 5.43259 5.49232 5.69685 6.22899 6.32687 6.46867 6.48777 7.17533 7.69739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.087 4.087 3 Si 0.775 3.225 4 C -0.081 4.081 5 C -0.159 4.159 6 C -0.076 4.076 7 C -0.210 4.210 8 C 0.117 3.883 9 O -0.325 6.325 10 C 0.074 3.926 11 C -0.135 4.135 12 C 0.522 3.478 13 O -0.581 6.581 14 N -0.713 5.713 15 C 0.145 3.855 16 H 0.073 0.927 17 C -0.116 4.116 18 C -0.102 4.102 19 C 0.003 3.997 20 H 0.108 0.892 21 C 0.191 3.809 22 N -0.343 5.343 23 N -0.355 5.355 24 C 0.169 3.831 25 N -0.569 5.569 26 C -0.107 4.107 27 C -0.122 4.122 28 C -0.141 4.141 29 H 0.386 0.614 30 H 0.125 0.875 31 H -0.302 1.302 32 H -0.280 1.280 33 H 0.146 0.854 34 H 0.152 0.848 35 H 0.137 0.863 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.418 0.582 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.261 0.739 46 H 0.445 0.555 47 H 0.073 0.927 48 H 0.072 0.928 49 H 0.080 0.920 50 H 0.058 0.942 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.562 3.328 0.429 3.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.195 4.195 3 Si 0.680 3.320 4 C -0.082 4.082 5 C -0.176 4.176 6 C -0.093 4.093 7 C -0.229 4.229 8 C 0.072 3.928 9 O -0.239 6.239 10 C -0.001 4.001 11 C -0.175 4.175 12 C 0.309 3.691 13 O -0.461 6.461 14 N -0.364 5.364 15 C 0.041 3.959 16 H 0.092 0.908 17 C -0.154 4.154 18 C -0.141 4.141 19 C -0.018 4.018 20 H 0.126 0.874 21 C -0.080 4.080 22 N -0.182 5.182 23 N -0.194 5.194 24 C -0.121 4.121 25 N -0.183 5.183 26 C -0.146 4.146 27 C -0.161 4.161 28 C -0.160 4.160 29 H 0.235 0.765 30 H 0.143 0.857 31 H -0.231 1.231 32 H -0.207 1.207 33 H 0.163 0.837 34 H 0.170 0.830 35 H 0.155 0.845 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.256 0.744 41 H 0.101 0.899 42 H 0.107 0.893 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.277 0.723 46 H 0.289 0.711 47 H 0.092 0.908 48 H 0.091 0.909 49 H 0.099 0.901 50 H 0.076 0.924 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.580 2.465 0.181 2.934 hybrid contribution -0.901 1.165 0.890 1.721 sum 0.679 3.630 1.071 3.845 Atomic orbital electron populations 1.86578 1.18453 1.80475 1.50127 1.25341 0.83505 1.12273 0.98378 0.93873 0.90280 0.71429 0.76376 1.20152 0.97951 0.93269 0.96785 1.21206 1.00869 1.00774 0.94780 1.21239 0.97247 0.93437 0.97420 1.21549 1.04144 0.96522 1.00638 1.19140 0.95765 0.82991 0.94915 1.85958 1.74665 1.20305 1.42983 1.22447 0.99227 0.93069 0.85379 1.21454 1.05354 0.93489 0.97154 1.20542 0.78739 0.82451 0.87355 1.90729 1.42894 1.63610 1.48838 1.45933 1.57362 1.09010 1.24107 1.21004 0.93203 0.94690 0.87032 0.90841 1.21734 0.99583 0.95820 0.98294 1.21478 0.93252 1.01000 0.98402 1.19827 0.95323 0.96972 0.89674 0.87414 1.25216 0.99883 0.89525 0.93342 1.74187 1.19205 1.14921 1.09934 1.74194 1.16319 1.24844 1.04027 1.27292 1.01684 0.83647 0.99501 1.44092 1.47114 1.12701 1.14433 1.21524 0.99258 0.95249 0.98588 1.21815 0.95491 1.00674 0.98086 1.20341 1.03988 0.94334 0.97305 0.76455 0.85726 1.23081 1.20653 0.83655 0.83018 0.84491 0.91787 0.91539 0.85635 0.85806 0.74423 0.89892 0.89258 0.91227 0.91055 0.72306 0.71140 0.90812 0.90925 0.90149 0.92355 0.85421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.85 12.84 -148.98 -1.91 -3.76 16 2 C -0.09 -0.01 2.80 71.24 0.20 0.19 16 3 Si 0.78 -1.68 29.88 68.60 2.05 0.37 16 4 C -0.08 -0.11 5.35 -19.88 -0.11 -0.22 16 5 C -0.16 0.11 8.67 22.28 0.19 0.30 16 6 C -0.08 0.04 10.04 22.25 0.22 0.26 16 7 C -0.21 -0.44 9.04 22.36 0.20 -0.23 16 8 C 0.12 0.52 6.69 22.50 0.15 0.67 16 9 O -0.32 -1.15 10.14 -92.50 -0.94 -2.08 16 10 C 0.07 -0.01 4.03 71.98 0.29 0.28 16 11 C -0.13 0.76 6.07 29.85 0.18 0.94 16 12 C 0.52 -1.11 7.79 87.66 0.68 -0.43 16 13 O -0.58 -3.67 15.64 -3.03 -0.05 -3.71 16 14 N -0.71 5.32 5.08 -442.53 -2.25 3.08 16 15 C 0.15 -0.95 2.45 44.99 0.11 -0.84 16 16 H 0.07 -0.18 7.58 -2.39 -0.02 -0.20 16 17 C -0.12 1.09 5.39 30.59 0.16 1.25 16 18 C -0.10 0.68 5.19 30.60 0.16 0.84 16 19 C 0.00 -0.01 2.66 -11.54 -0.03 -0.04 16 20 H 0.11 -0.45 8.14 -2.39 -0.02 -0.47 16 21 C 0.19 0.21 6.99 137.98 0.96 1.17 16 22 N -0.34 -3.54 12.21 -50.16 -0.61 -4.16 16 23 N -0.36 -3.56 12.21 -59.99 -0.73 -4.29 16 24 C 0.17 -0.16 13.19 180.11 2.37 2.21 16 25 N -0.57 2.50 5.96 -189.87 -1.13 1.37 16 26 C -0.11 0.76 4.97 30.58 0.15 0.91 16 27 C -0.12 0.76 5.49 30.58 0.17 0.92 16 28 C -0.14 -0.59 9.63 22.37 0.22 -0.38 16 29 H 0.39 -0.88 8.70 -74.06 -0.64 -1.53 16 30 H 0.12 -0.17 7.96 -2.39 -0.02 -0.19 16 31 H -0.30 -1.66 7.11 99.48 0.71 -0.95 16 32 H -0.28 -0.31 7.01 99.48 0.70 0.38 16 33 H 0.15 -0.69 4.83 -2.91 -0.01 -0.70 16 34 H 0.15 -0.81 8.06 -2.91 -0.02 -0.84 16 35 H 0.14 0.05 6.30 -2.91 -0.02 0.03 16 36 H 0.06 0.08 7.62 -2.39 -0.02 0.06 16 37 H 0.07 0.06 7.62 -2.39 -0.02 0.04 16 38 H 0.13 -1.13 8.14 -2.39 -0.02 -1.15 16 39 H 0.12 -1.09 8.14 -2.39 -0.02 -1.11 16 40 H 0.42 -5.51 8.60 -92.71 -0.80 -6.30 16 41 H 0.08 -0.80 8.14 -2.39 -0.02 -0.82 16 42 H 0.09 -1.01 8.14 -2.39 -0.02 -1.03 16 43 H 0.07 -0.48 8.14 -2.39 -0.02 -0.50 16 44 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 45 H 0.26 -2.82 8.06 -2.91 -0.02 -2.84 16 46 H 0.45 -5.22 8.28 -92.70 -0.77 -5.98 16 47 H 0.07 -0.64 7.52 -2.39 -0.02 -0.66 16 48 H 0.07 -0.44 8.14 -2.39 -0.02 -0.46 16 49 H 0.08 -0.61 8.14 -2.39 -0.02 -0.63 16 50 H 0.06 -0.12 8.14 -2.39 -0.02 -0.13 16 51 H 0.13 0.58 8.06 -2.91 -0.02 0.55 16 Total: 0.00 -30.64 415.11 -0.47 -31.11 By element: Atomic # 1 Polarization: -24.54 SS G_CDS: -1.19 Total: -25.73 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: 6.29 Total: 7.82 kcal Atomic # 7 Polarization: 0.72 SS G_CDS: -4.72 Total: -4.00 kcal Atomic # 8 Polarization: -6.66 SS G_CDS: -2.90 Total: -9.56 kcal Atomic # 14 Polarization: -1.68 SS G_CDS: 2.05 Total: 0.37 kcal Total: -30.64 -0.47 -31.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16624780_4549614.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.214 kcal (2) G-P(sol) polarization free energy of solvation -30.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds