Wall clock time and date at job start Sun Mar 7 2021 05:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86299 * 109.47141 * 2 1 4 4 C 1.50700 * 109.46739 * 240.00525 * 2 1 3 5 5 C 1.38244 * 119.97408 * 120.00023 * 4 2 1 6 6 C 1.38286 * 120.11468 * 180.02562 * 5 4 2 7 7 C 1.38126 * 120.05585 * 0.02562 * 6 5 4 8 8 C 1.38758 * 119.94151 * 359.97427 * 7 6 5 9 9 O 1.35900 * 120.05465 * 180.02562 * 8 7 6 10 10 C 1.42906 * 117.00129 * 359.97438 * 9 8 7 11 11 C 1.52997 * 109.47362 * 180.02562 * 10 9 8 12 12 C 1.52998 * 109.47263 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.46944 * 179.97438 * 12 11 10 14 14 O 1.21274 * 120.00450 * 0.02562 * 13 12 11 15 15 N 1.34782 * 119.99489 * 180.02562 * 13 12 11 16 16 C 1.46500 * 119.99474 * 179.97438 * 15 13 12 17 17 H 1.08996 * 109.47738 * 34.99759 * 16 15 13 18 18 C 1.53002 * 109.47089 * 154.99416 * 16 15 13 19 19 C 1.52997 * 109.47415 * 179.97438 * 18 16 15 20 20 C 1.53006 * 109.47164 * 300.00027 * 19 18 16 21 21 H 1.09000 * 109.47050 * 300.00004 * 20 19 18 22 22 C 1.50697 * 109.47239 * 179.97438 * 20 19 18 23 23 N 1.30528 * 126.34277 * 94.69283 * 22 20 19 24 24 N 1.28597 * 109.66965 * 179.82580 * 23 22 20 25 25 C 1.30515 * 109.67084 * 0.44678 * 24 23 22 26 26 N 1.35489 * 126.34875 * 275.00268 * 22 20 19 27 27 C 1.52999 * 109.46626 * 59.99702 * 20 19 18 28 28 C 1.52996 * 109.47249 * 274.99290 * 16 15 13 29 29 C 1.38171 * 119.97076 * 300.24802 * 4 2 1 30 30 H 0.96695 * 114.00068 * 59.99472 * 1 2 3 31 31 H 1.09000 * 109.47200 * 120.00894 * 2 1 3 32 32 H 1.48501 * 109.99727 * 60.00402 * 3 2 1 33 33 H 1.48502 * 110.00048 * 181.31873 * 3 2 1 34 34 H 1.07999 * 119.94475 * 359.97438 * 5 4 2 35 35 H 1.08001 * 119.97287 * 179.97438 * 6 5 4 36 36 H 1.07998 * 120.03098 * 179.97438 * 7 6 5 37 37 H 1.09000 * 109.47004 * 59.99260 * 10 9 8 38 38 H 1.09006 * 109.46778 * 300.00283 * 10 9 8 39 39 H 1.09000 * 109.46831 * 59.99622 * 11 10 9 40 40 H 1.08998 * 109.46578 * 300.00140 * 11 10 9 41 41 H 1.09006 * 109.46812 * 59.99711 * 12 11 10 42 42 H 1.08997 * 109.47149 * 300.00340 * 12 11 10 43 43 H 0.96992 * 120.00293 * 359.97438 * 15 13 12 44 44 H 1.09000 * 109.46986 * 59.99786 * 18 16 15 45 45 H 1.09001 * 109.47601 * 300.00509 * 18 16 15 46 46 H 1.09001 * 109.46922 * 180.02562 * 19 18 16 47 47 H 1.09000 * 109.47140 * 59.99976 * 19 18 16 48 48 H 1.08005 * 126.34535 * 179.73820 * 25 24 23 49 49 H 0.96994 * 126.98064 * 0.02562 * 26 22 20 50 50 H 1.09000 * 109.47160 * 60.00369 * 27 20 19 51 51 H 1.09002 * 109.46719 * 180.02562 * 27 20 19 52 52 H 1.09000 * 109.47054 * 300.00354 * 28 16 15 53 53 H 1.09001 * 109.46997 * 60.00087 * 28 16 15 54 54 H 1.07996 * 120.02916 * 0.02562 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7103 -1.2306 5 6 2.7260 -0.0379 -2.1402 6 6 3.1880 -0.6867 -3.2706 7 6 2.8559 -2.0087 -3.4938 8 6 2.0584 -2.6859 -2.5824 9 8 1.7306 -3.9868 -2.7995 10 6 2.2415 -4.5950 -3.9874 11 6 1.7701 -6.0488 -4.0594 12 6 2.3166 -6.6998 -5.3316 13 6 1.8527 -8.1319 -5.4020 14 8 1.1536 -8.5869 -4.5218 15 7 2.2150 -8.9070 -6.4435 16 6 1.7645 -10.2993 -6.5117 17 1 0.7607 -10.3774 -6.0944 18 6 1.7473 -10.7588 -7.9710 19 6 1.2775 -12.2131 -8.0423 20 6 2.2339 -13.0980 -7.2403 21 1 3.2378 -13.0196 -7.6578 22 6 1.7709 -14.5304 -7.3099 23 7 2.1830 -15.4364 -8.1544 24 7 1.5791 -16.5483 -7.9252 25 6 0.7474 -16.3997 -6.9304 26 7 0.8453 -15.1149 -6.5115 27 6 2.2512 -12.6384 -5.7810 28 6 2.7205 -11.1845 -5.7096 29 6 1.5929 -2.0316 -1.4513 30 1 -0.3933 0.4417 -0.7650 31 1 1.7924 -0.5140 0.8899 32 1 1.5616 2.4678 1.2086 33 1 3.5347 1.7703 -0.0321 34 1 2.9858 0.9962 -1.9681 35 1 3.8084 -0.1591 -3.9799 36 1 3.2166 -2.5149 -4.3770 37 1 3.3310 -4.5662 -3.9707 38 1 1.8772 -4.0517 -4.8594 39 1 0.6806 -6.0770 -4.0763 40 1 2.1341 -6.5922 -3.1875 41 1 3.4061 -6.6714 -5.3150 42 1 1.9523 -6.1561 -6.2032 43 1 2.7739 -8.5430 -7.1477 44 1 2.7512 -10.6808 -8.3884 45 1 1.0663 -10.1282 -8.5426 46 1 1.2656 -12.5406 -9.0819 47 1 0.2736 -12.2916 -7.6248 48 1 0.1009 -17.1600 -6.5175 49 1 0.3527 -14.6981 -5.7874 50 1 1.2473 -12.7169 -5.3635 51 1 2.9329 -13.2685 -5.2097 52 1 3.7244 -11.1065 -6.1270 53 1 2.7328 -10.8572 -4.6700 54 1 0.9683 -2.5552 -0.7427 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16624780_4549616.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:36:02 Heat of formation + Delta-G solvation = -21.670395 kcal Electronic energy + Delta-G solvation = -33816.631178 eV Core-core repulsion = 29141.710226 eV Total energy + Delta-G solvation = -4674.920952 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 387.199 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -44.16507 -41.32209 -41.07579 -39.43577 -39.10691 -37.29660 -35.73838 -34.88064 -34.57689 -32.45803 -32.42706 -31.88991 -31.23305 -29.82700 -28.05889 -26.80652 -24.81748 -24.12789 -23.69441 -23.48650 -23.06619 -22.11145 -21.80937 -21.38596 -20.79358 -19.32309 -19.18495 -18.12093 -17.83047 -17.45749 -17.34579 -17.14979 -16.88298 -16.80025 -16.42184 -16.37106 -16.13762 -15.89618 -15.40412 -15.28240 -15.12605 -14.90440 -14.75315 -14.52649 -14.29907 -14.18565 -14.05152 -13.72970 -13.32338 -13.27112 -13.23073 -13.03506 -12.83267 -12.72531 -12.42631 -12.32016 -12.26281 -12.24059 -12.20535 -11.97245 -11.85527 -11.67414 -11.61378 -11.58269 -11.52005 -11.31099 -10.87672 -10.50941 -10.26767 -10.05441 -9.90594 -9.23849 -4.98965 0.22182 0.41400 0.84138 1.29895 1.64776 1.64891 1.82927 1.87416 1.92082 2.00528 2.39750 2.69277 3.15635 3.49780 3.52080 3.64393 3.66020 3.69656 3.85763 3.86349 3.89249 3.95952 3.99926 4.10602 4.12606 4.19730 4.22751 4.25640 4.31317 4.31892 4.37158 4.38918 4.41745 4.42468 4.43693 4.49794 4.53892 4.63597 4.66879 4.71309 4.79429 4.99111 4.99337 5.00807 5.02397 5.03183 5.07146 5.15284 5.17211 5.25520 5.29356 5.31778 5.39377 5.46029 5.54385 5.75447 6.21476 6.43624 6.58053 6.74407 7.29053 7.68715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.084 4.084 3 Si 0.792 3.208 4 C -0.085 4.085 5 C -0.161 4.161 6 C -0.072 4.072 7 C -0.206 4.206 8 C 0.116 3.884 9 O -0.340 6.340 10 C 0.057 3.943 11 C -0.101 4.101 12 C -0.129 4.129 13 C 0.509 3.491 14 O -0.588 6.588 15 N -0.715 5.715 16 C 0.144 3.856 17 H 0.068 0.932 18 C -0.115 4.115 19 C -0.103 4.103 20 C 0.004 3.996 21 H 0.109 0.891 22 C 0.191 3.809 23 N -0.342 5.342 24 N -0.355 5.355 25 C 0.169 3.831 26 N -0.570 5.570 27 C -0.108 4.108 28 C -0.121 4.121 29 C -0.153 4.153 30 H 0.395 0.605 31 H 0.102 0.898 32 H -0.301 1.301 33 H -0.281 1.281 34 H 0.148 0.852 35 H 0.160 0.840 36 H 0.154 0.846 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.126 0.874 42 H 0.128 0.872 43 H 0.418 0.582 44 H 0.090 0.910 45 H 0.083 0.917 46 H 0.072 0.928 47 H 0.067 0.933 48 H 0.261 0.739 49 H 0.445 0.555 50 H 0.071 0.929 51 H 0.071 0.929 52 H 0.081 0.919 53 H 0.053 0.947 54 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.421 6.246 -4.971 8.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.193 4.193 3 Si 0.698 3.302 4 C -0.085 4.085 5 C -0.178 4.178 6 C -0.090 4.090 7 C -0.224 4.224 8 C 0.071 3.929 9 O -0.254 6.254 10 C -0.017 4.017 11 C -0.139 4.139 12 C -0.168 4.168 13 C 0.297 3.703 14 O -0.468 6.468 15 N -0.367 5.367 16 C 0.039 3.961 17 H 0.086 0.914 18 C -0.153 4.153 19 C -0.142 4.142 20 C -0.017 4.017 21 H 0.127 0.873 22 C -0.080 4.080 23 N -0.182 5.182 24 N -0.193 5.193 25 C -0.121 4.121 26 N -0.184 5.184 27 C -0.147 4.147 28 C -0.160 4.160 29 C -0.172 4.172 30 H 0.245 0.755 31 H 0.119 0.881 32 H -0.229 1.229 33 H -0.208 1.208 34 H 0.165 0.835 35 H 0.177 0.823 36 H 0.171 0.829 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.144 0.856 42 H 0.146 0.854 43 H 0.256 0.744 44 H 0.109 0.891 45 H 0.102 0.898 46 H 0.091 0.909 47 H 0.086 0.914 48 H 0.277 0.723 49 H 0.288 0.712 50 H 0.090 0.910 51 H 0.090 0.910 52 H 0.100 0.900 53 H 0.072 0.928 54 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.213 5.292 -4.557 7.325 hybrid contribution -0.823 -0.401 1.608 1.850 sum 1.390 4.890 -2.948 5.877 Atomic orbital electron populations 1.86470 1.17351 1.82284 1.50458 1.25388 0.85303 1.11705 0.96882 0.93514 0.77761 0.74394 0.84570 1.20210 0.97827 0.93496 0.96981 1.21189 1.00474 1.00728 0.95445 1.21315 0.97317 0.93578 0.96787 1.21606 1.02704 0.96872 1.01227 1.19200 0.95194 0.83572 0.94919 1.86054 1.71725 1.22884 1.44743 1.23008 0.99606 0.93264 0.85829 1.21148 1.01579 0.92894 0.98326 1.21540 1.04572 0.90903 0.99803 1.21124 0.79031 0.89103 0.80999 1.90730 1.39784 1.76194 1.40086 1.45977 1.53694 1.11897 1.25146 1.20957 0.98031 0.80459 0.96611 0.91391 1.21725 1.04011 0.95294 0.94238 1.21484 0.98332 0.93890 1.00471 1.19820 1.01411 0.82629 0.97864 0.87292 1.25217 0.92598 0.98855 0.91292 1.74187 1.23765 0.96984 1.23224 1.74189 1.10106 1.18467 1.16572 1.27289 1.01554 0.87494 0.95802 1.44100 1.33167 1.11043 1.30080 1.21525 1.02575 0.96463 0.94118 1.21804 1.00139 0.93679 1.00378 1.20313 1.04151 0.94947 0.97756 0.75464 0.88084 1.22889 1.20786 0.83499 0.82290 0.82853 0.89985 0.89725 0.92169 0.92328 0.85566 0.85427 0.74419 0.89115 0.89840 0.90933 0.91419 0.72324 0.71186 0.91049 0.91009 0.90019 0.92769 0.86747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.47 12.76 -148.98 -1.90 -3.37 16 2 C -0.08 -0.12 2.82 71.24 0.20 0.08 16 3 Si 0.79 -1.68 29.79 68.60 2.04 0.37 16 4 C -0.08 -0.18 5.39 -19.88 -0.11 -0.29 16 5 C -0.16 0.28 8.67 22.28 0.19 0.47 16 6 C -0.07 0.24 10.04 22.25 0.22 0.46 16 7 C -0.21 0.29 9.04 22.37 0.20 0.50 16 8 C 0.12 0.50 6.69 22.51 0.15 0.65 16 9 O -0.34 -1.81 10.14 -92.43 -0.94 -2.75 16 10 C 0.06 -0.19 4.74 71.98 0.34 0.15 16 11 C -0.10 0.14 4.87 30.59 0.15 0.29 16 12 C -0.13 1.09 5.70 29.85 0.17 1.26 16 13 C 0.51 -0.78 7.79 87.66 0.68 -0.10 16 14 O -0.59 -5.37 15.64 -3.01 -0.05 -5.42 16 15 N -0.72 5.23 5.08 -442.54 -2.25 2.98 16 16 C 0.14 -0.81 2.46 44.99 0.11 -0.70 16 17 H 0.07 -0.04 7.58 -2.39 -0.02 -0.06 16 18 C -0.11 1.04 5.39 30.59 0.16 1.21 16 19 C -0.10 0.63 5.19 30.60 0.16 0.79 16 20 C 0.00 -0.02 2.66 -11.54 -0.03 -0.05 16 21 H 0.11 -0.42 8.14 -2.39 -0.02 -0.44 16 22 C 0.19 0.32 6.99 137.98 0.96 1.28 16 23 N -0.34 -3.66 12.21 -50.16 -0.61 -4.27 16 24 N -0.35 -3.70 12.21 -59.99 -0.73 -4.43 16 25 C 0.17 -0.06 13.19 180.11 2.37 2.31 16 26 N -0.57 2.06 5.96 -189.86 -1.13 0.93 16 27 C -0.11 0.64 4.97 30.58 0.15 0.80 16 28 C -0.12 0.62 5.49 30.58 0.17 0.78 16 29 C -0.15 -0.92 9.55 22.37 0.21 -0.71 16 30 H 0.40 -2.32 8.70 -74.06 -0.64 -2.96 16 31 H 0.10 0.35 7.96 -2.39 -0.02 0.33 16 32 H -0.30 -1.65 7.11 99.48 0.71 -0.94 16 33 H -0.28 -0.49 7.11 99.48 0.71 0.22 16 34 H 0.15 -0.92 4.87 -2.91 -0.01 -0.93 16 35 H 0.16 -1.49 8.06 -2.91 -0.02 -1.51 16 36 H 0.15 -1.08 6.30 -2.91 -0.02 -1.10 16 37 H 0.08 -0.58 7.66 -2.39 -0.02 -0.60 16 38 H 0.08 -0.63 7.66 -2.38 -0.02 -0.65 16 39 H 0.06 0.19 8.10 -2.39 -0.02 0.17 16 40 H 0.06 0.20 8.10 -2.39 -0.02 0.18 16 41 H 0.13 -1.72 8.14 -2.38 -0.02 -1.74 16 42 H 0.13 -1.77 8.14 -2.39 -0.02 -1.79 16 43 H 0.42 -5.82 8.60 -92.71 -0.80 -6.62 16 44 H 0.09 -1.04 8.14 -2.39 -0.02 -1.06 16 45 H 0.08 -0.80 8.14 -2.39 -0.02 -0.82 16 46 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 47 H 0.07 -0.41 8.14 -2.39 -0.02 -0.43 16 48 H 0.26 -2.66 8.06 -2.91 -0.02 -2.68 16 49 H 0.44 -4.76 8.28 -92.71 -0.77 -5.53 16 50 H 0.07 -0.51 7.52 -2.39 -0.02 -0.53 16 51 H 0.07 -0.35 8.14 -2.39 -0.02 -0.37 16 52 H 0.08 -0.57 8.14 -2.39 -0.02 -0.59 16 53 H 0.05 -0.01 8.14 -2.39 -0.02 -0.03 16 54 H 0.11 0.99 8.06 -2.91 -0.02 0.96 16 Total: 0.00 -36.29 436.56 -0.31 -36.60 By element: Atomic # 1 Polarization: -28.60 SS G_CDS: -1.22 Total: -29.82 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: 6.48 Total: 9.18 kcal Atomic # 7 Polarization: -0.06 SS G_CDS: -4.72 Total: -4.79 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: -2.89 Total: -11.54 kcal Atomic # 14 Polarization: -1.68 SS G_CDS: 2.04 Total: 0.37 kcal Total: -36.29 -0.31 -36.60 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16624780_4549616.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.931 kcal (2) G-P(sol) polarization free energy of solvation -36.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds