Wall clock time and date at job start Sun Mar 7 2021 05:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35992 * 117.00140 * 2 1 4 4 C 1.39157 * 120.07163 * 180.02562 * 3 2 1 5 5 O 1.35991 * 120.07528 * 359.97438 * 4 3 2 6 6 C 1.42898 * 117.00143 * 179.72478 * 5 4 3 7 7 C 1.50703 * 109.47171 * 180.02562 * 6 5 4 8 8 O 1.21278 * 119.99985 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00161 * 180.02562 * 7 6 5 10 10 C 1.46496 * 120.00271 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.47199 * 324.99664 * 10 9 7 12 12 C 1.52996 * 109.47084 * 84.99619 * 10 9 7 13 13 C 1.53002 * 109.47141 * 180.02562 * 12 10 9 14 14 C 1.53009 * 109.47090 * 300.00105 * 13 12 10 15 15 H 1.09001 * 109.46866 * 300.00109 * 14 13 12 16 16 C 1.50695 * 109.47044 * 179.97438 * 14 13 12 17 17 N 1.30520 * 126.34125 * 144.69003 * 16 14 13 18 18 N 1.28605 * 109.67173 * 179.82110 * 17 16 14 19 19 C 1.30524 * 109.66859 * 0.45264 * 18 17 16 20 20 N 1.35493 * 126.34875 * 325.00125 * 16 14 13 21 21 C 1.52998 * 109.46882 * 59.99780 * 14 13 12 22 22 C 1.53002 * 109.47076 * 204.99915 * 10 9 7 23 23 C 1.38563 * 119.85244 * 179.72966 * 4 3 2 24 24 C 1.38248 * 119.99832 * 0.26998 * 23 4 3 25 25 N 1.48008 * 119.92542 * 180.02562 * 24 23 4 26 26 O 1.21802 * 119.99956 * 0.02562 * 25 24 23 27 27 O 1.21801 * 119.99764 * 180.02562 * 25 24 23 28 28 C 1.38256 * 120.14561 * 359.97438 * 24 23 4 29 29 C 1.50697 * 119.92170 * 180.02562 * 28 24 23 30 30 O 1.42895 * 109.47474 * 74.99900 * 29 28 24 31 31 Si 1.86303 * 109.46849 * 195.00021 * 29 28 24 32 32 C 1.38239 * 120.14791 * 0.02562 * 28 24 23 33 33 H 1.09002 * 109.47176 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47320 * 299.99597 * 1 2 3 35 35 H 1.09000 * 109.47176 * 59.99913 * 1 2 3 36 36 H 1.09002 * 109.47259 * 300.00512 * 6 5 4 37 37 H 1.09001 * 109.47074 * 60.00533 * 6 5 4 38 38 H 0.97005 * 119.99463 * 359.97438 * 9 7 6 39 39 H 1.09002 * 109.47281 * 299.99855 * 12 10 9 40 40 H 1.08999 * 109.47646 * 60.00441 * 12 10 9 41 41 H 1.09004 * 109.47634 * 180.02562 * 13 12 10 42 42 H 1.09001 * 109.47355 * 59.99915 * 13 12 10 43 43 H 1.07994 * 126.34095 * 179.73332 * 19 18 17 44 44 H 0.96998 * 126.97721 * 359.97438 * 20 16 14 45 45 H 1.09002 * 109.46949 * 180.02562 * 21 14 13 46 46 H 1.08997 * 109.47585 * 60.00535 * 21 14 13 47 47 H 1.08997 * 109.46609 * 299.99518 * 22 10 9 48 48 H 1.09002 * 109.47469 * 59.99768 * 22 10 9 49 49 H 1.07994 * 120.00065 * 180.29810 * 23 4 3 50 50 H 1.08999 * 109.47158 * 314.99500 * 29 28 24 51 51 H 0.96700 * 114.00210 * 179.97438 * 30 29 28 52 52 H 1.48500 * 110.00221 * 178.67957 * 31 29 28 53 53 H 1.48503 * 109.99901 * 299.99914 * 31 29 28 54 54 H 1.07993 * 119.99794 * 180.02562 * 32 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4360 1.2862 -0.0005 5 8 4.1795 0.1476 -0.0005 6 6 5.6003 0.3005 -0.0072 7 6 6.2518 -1.0584 -0.0068 8 8 5.5669 -2.0593 -0.0009 9 7 7.5956 -1.1615 -0.0120 10 6 8.2290 -2.4824 -0.0122 11 1 7.6294 -3.1729 0.5809 12 6 8.3303 -2.9992 -1.4487 13 6 8.9912 -4.3791 -1.4488 14 6 10.3931 -4.2733 -0.8448 15 1 10.9930 -3.5830 -1.4378 16 6 11.0438 -5.6325 -0.8444 17 7 12.3100 -5.8839 -1.0369 18 7 12.5155 -7.1514 -0.9652 19 6 11.3881 -7.7668 -0.7332 20 7 10.4219 -6.8205 -0.6499 21 6 10.2917 -3.7564 0.5917 22 6 9.6308 -2.3760 0.5916 23 6 4.0603 2.5232 -0.0062 24 6 3.3030 3.6797 -0.0057 25 7 3.9716 5.0002 -0.0123 26 8 5.1877 5.0670 -0.0187 27 8 3.3056 6.0200 -0.0114 28 6 1.9224 3.6056 0.0000 29 6 1.1018 4.8696 0.0000 30 8 1.1296 5.4556 -1.3030 31 14 -0.6576 4.4676 0.4626 32 6 1.2932 2.3747 0.0057 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3634 0.5138 0.8900 35 1 -0.3633 0.5138 -0.8900 36 1 5.9027 0.8478 -0.9001 37 1 5.9105 0.8528 0.8799 38 1 8.1434 -0.3609 -0.0164 39 1 7.3316 -3.0751 -1.8788 40 1 8.9299 -2.3088 -2.0419 41 1 9.0638 -4.7472 -2.4722 42 1 8.3913 -5.0694 -0.8558 43 1 11.2508 -8.8328 -0.6272 44 1 9.4771 -6.9642 -0.4842 45 1 11.2904 -3.6806 1.0218 46 1 9.6918 -4.4467 1.1848 47 1 10.2303 -1.6855 -0.0016 48 1 9.5587 -2.0077 1.6150 49 1 5.1386 2.5838 -0.0115 50 1 1.5162 5.5718 0.7232 51 1 0.6206 6.2745 -1.3769 52 1 -1.4702 5.7100 0.4973 53 1 -1.2341 3.5107 -0.5159 54 1 0.2147 2.3197 0.0096 There are 80 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 80 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16624780_4549636.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:36:26 Heat of formation + Delta-G solvation = -26.330545 kcal Electronic energy + Delta-G solvation = -42323.140185 eV Core-core repulsion = 36653.856145 eV Total energy + Delta-G solvation = -5669.284040 eV No. of doubly occupied orbitals = 80 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 434.177 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -44.15060 -43.39804 -42.11649 -41.22257 -39.97576 -39.24615 -38.95936 -37.76502 -37.24320 -35.78070 -34.59331 -32.87182 -32.69943 -32.37533 -31.87899 -30.43026 -29.09524 -28.59969 -27.91554 -25.82110 -24.75671 -24.13101 -23.79383 -23.29919 -23.06217 -22.18996 -21.62528 -20.94879 -20.73030 -19.86229 -19.45840 -19.30844 -18.91525 -18.61532 -18.36053 -18.13515 -17.72801 -17.64724 -17.14529 -16.86290 -16.84627 -16.47977 -16.37261 -16.13554 -15.85581 -15.67353 -15.53185 -15.13454 -15.11847 -14.83165 -14.73739 -14.26350 -14.11952 -14.03144 -13.89463 -13.67505 -13.49732 -13.28968 -12.92845 -12.84196 -12.68491 -12.58665 -12.42901 -12.41207 -12.37311 -12.31822 -12.28125 -12.20151 -12.18261 -11.91489 -11.84235 -11.67785 -11.52180 -11.31121 -10.99847 -10.48215 -10.41435 -10.26481 -10.15612 -9.49477 -5.01747 -1.33625 -0.43814 0.17995 0.30691 0.85422 1.13563 1.25521 1.42260 1.51635 1.83056 1.84424 1.86606 1.89242 1.90338 2.35175 2.90095 3.13128 3.18149 3.29959 3.45784 3.48971 3.59540 3.61615 3.65415 3.85120 3.87352 3.94108 3.97310 3.97852 4.04365 4.12561 4.13041 4.18951 4.20793 4.29662 4.31501 4.32331 4.37281 4.39999 4.43408 4.50230 4.60620 4.64952 4.70642 4.75324 4.78962 4.99944 5.00342 5.04476 5.08358 5.16226 5.25492 5.27094 5.28300 5.43294 5.58104 6.03294 6.23080 6.42772 6.50456 6.51844 7.10903 7.70081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.000 4.000 2 O -0.305 6.305 3 C 0.168 3.832 4 C 0.103 3.897 5 O -0.289 6.289 6 C 0.024 3.976 7 C 0.518 3.482 8 O -0.564 6.564 9 N -0.706 5.706 10 C 0.147 3.853 11 H 0.074 0.926 12 C -0.123 4.123 13 C -0.108 4.108 14 C 0.003 3.997 15 H 0.109 0.891 16 C 0.191 3.809 17 N -0.342 5.342 18 N -0.355 5.355 19 C 0.169 3.831 20 N -0.569 5.569 21 C -0.102 4.102 22 C -0.116 4.116 23 C -0.109 4.109 24 C -0.045 4.045 25 N 0.038 4.962 26 O -0.190 6.190 27 O -0.158 6.158 28 C 0.003 3.997 29 C -0.105 4.105 30 O -0.547 6.547 31 Si 0.769 3.231 32 C -0.173 4.173 33 H 0.125 0.875 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.125 0.875 37 H 0.130 0.870 38 H 0.421 0.579 39 H 0.055 0.945 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.261 0.739 44 H 0.445 0.555 45 H 0.072 0.928 46 H 0.069 0.931 47 H 0.091 0.909 48 H 0.085 0.915 49 H 0.187 0.813 50 H 0.102 0.898 51 H 0.400 0.600 52 H -0.277 1.277 53 H -0.269 1.269 54 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.842 -1.180 4.263 8.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 O -0.217 6.217 3 C 0.119 3.881 4 C 0.056 3.944 5 O -0.202 6.202 6 C -0.054 4.054 7 C 0.304 3.696 8 O -0.441 6.441 9 N -0.360 5.360 10 C 0.043 3.957 11 H 0.092 0.908 12 C -0.162 4.162 13 C -0.146 4.146 14 C -0.018 4.018 15 H 0.127 0.873 16 C -0.080 4.080 17 N -0.182 5.182 18 N -0.193 5.193 19 C -0.122 4.122 20 N -0.184 5.184 21 C -0.142 4.142 22 C -0.153 4.153 23 C -0.128 4.128 24 C -0.130 4.130 25 N 0.552 4.448 26 O -0.399 6.399 27 O -0.374 6.374 28 C 0.001 3.999 29 C -0.212 4.212 30 O -0.357 6.357 31 Si 0.670 3.330 32 C -0.192 4.192 33 H 0.143 0.857 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.143 0.857 37 H 0.148 0.852 38 H 0.259 0.741 39 H 0.074 0.926 40 H 0.101 0.899 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.277 0.723 44 H 0.288 0.712 45 H 0.091 0.909 46 H 0.088 0.912 47 H 0.110 0.890 48 H 0.104 0.896 49 H 0.204 0.796 50 H 0.119 0.881 51 H 0.252 0.748 52 H -0.204 1.204 53 H -0.196 1.196 54 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -6.383 -3.206 3.615 8.006 hybrid contribution -1.008 1.446 -0.750 1.915 sum -7.391 -1.760 2.865 8.120 Atomic orbital electron populations 1.23733 0.75072 1.06984 1.03559 1.86313 1.24448 1.24538 1.86371 1.18637 0.89316 0.86152 0.93996 1.17903 0.88573 0.85267 1.02682 1.86296 1.18572 1.26635 1.88694 1.22960 0.78699 0.96461 1.07284 1.20241 0.83171 0.90256 0.75951 1.90775 1.63907 1.39637 1.49816 1.45758 1.05056 1.10582 1.74601 1.21031 0.94168 0.83887 0.96600 0.90784 1.21837 1.00901 0.96677 0.96793 1.21536 0.93480 0.97999 1.01630 1.19832 0.95858 0.86795 0.99312 0.87311 1.25224 0.90093 0.90955 1.01715 1.74190 1.14634 1.08553 1.20832 1.74198 1.25001 0.99942 1.20204 1.27290 0.83828 0.99529 1.01509 1.44096 1.13650 1.06211 1.54407 1.21490 1.01798 0.96873 0.93993 1.21750 0.93383 0.97443 1.02773 1.20912 1.03069 0.88016 1.00834 1.20555 0.92561 0.82283 1.17561 1.43563 1.00822 1.03217 0.97188 1.94514 0.96331 1.94058 1.54966 1.94484 1.64619 1.25302 1.53039 1.19107 0.90379 0.95868 0.94531 1.25398 1.11887 0.94115 0.89830 1.86475 1.75794 1.44931 1.28516 0.94370 0.70609 0.80971 0.87084 1.21156 1.02085 0.88660 1.07304 0.85658 0.89224 0.91239 0.85693 0.85210 0.74086 0.92598 0.89900 0.90989 0.90842 0.72335 0.71160 0.90905 0.91211 0.89001 0.89594 0.79601 0.88056 0.74833 1.20354 1.19562 0.80094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 9.81 113.37 1.11 1.11 16 2 O -0.31 -0.39 10.28 -79.59 -0.82 -1.20 16 3 C 0.17 0.12 6.70 22.57 0.15 0.27 16 4 C 0.10 0.10 6.70 22.57 0.15 0.26 16 5 O -0.29 -0.78 9.45 -67.03 -0.63 -1.41 16 6 C 0.02 -0.13 5.22 71.24 0.37 0.24 16 7 C 0.52 -0.51 7.87 87.66 0.69 0.18 16 8 O -0.56 -5.48 16.16 16.01 0.26 -5.22 16 9 N -0.71 5.57 5.08 -442.54 -2.25 3.32 16 10 C 0.15 -0.98 2.45 44.99 0.11 -0.86 16 11 H 0.07 -0.16 7.58 -2.39 -0.02 -0.18 16 12 C -0.12 0.73 5.49 30.59 0.17 0.90 16 13 C -0.11 0.73 4.97 30.60 0.15 0.88 16 14 C 0.00 -0.01 2.66 -11.54 -0.03 -0.04 16 15 H 0.11 -0.47 8.14 -2.39 -0.02 -0.49 16 16 C 0.19 0.23 6.98 137.98 0.96 1.19 16 17 N -0.34 -3.56 12.21 -50.16 -0.61 -4.17 16 18 N -0.35 -3.59 12.21 -59.99 -0.73 -4.32 16 19 C 0.17 -0.13 13.19 180.11 2.37 2.24 16 20 N -0.57 2.37 5.96 -189.87 -1.13 1.24 16 21 C -0.10 0.71 5.19 30.61 0.16 0.87 16 22 C -0.12 1.15 5.40 30.61 0.17 1.32 16 23 C -0.11 0.05 8.54 22.35 0.19 0.24 16 24 C -0.05 -0.17 6.85 36.38 0.25 0.08 16 25 N 0.04 0.32 4.45 -46.45 -0.21 0.11 16 26 O -0.19 -1.78 18.44 18.88 0.35 -1.44 16 27 O -0.16 -1.55 14.62 25.10 0.37 -1.18 16 28 C 0.00 0.00 5.29 -19.86 -0.11 -0.10 16 29 C -0.11 0.05 1.73 71.24 0.12 0.17 16 30 O -0.55 -1.43 11.77 -129.63 -1.53 -2.96 16 31 Si 0.77 -4.34 30.19 68.60 2.07 -2.27 16 32 C -0.17 0.34 7.65 22.35 0.17 0.51 16 33 H 0.13 -1.23 8.14 -2.39 -0.02 -1.25 16 34 H 0.09 -1.07 7.65 -2.39 -0.02 -1.09 16 35 H 0.07 -0.60 7.67 -2.39 -0.02 -0.62 16 36 H 0.13 -1.37 7.66 -2.39 -0.02 -1.39 16 37 H 0.13 -1.53 7.66 -2.39 -0.02 -1.55 16 38 H 0.42 -6.18 8.60 -92.70 -0.80 -6.98 16 39 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 40 H 0.08 -0.64 8.14 -2.39 -0.02 -0.65 16 41 H 0.07 -0.40 8.14 -2.38 -0.02 -0.42 16 42 H 0.07 -0.61 7.52 -2.39 -0.02 -0.63 16 43 H 0.26 -2.76 8.06 -2.91 -0.02 -2.78 16 44 H 0.45 -5.07 8.28 -92.71 -0.77 -5.84 16 45 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 46 H 0.07 -0.50 8.14 -2.39 -0.02 -0.52 16 47 H 0.09 -1.12 8.14 -2.39 -0.02 -1.14 16 48 H 0.09 -0.91 8.14 -2.39 -0.02 -0.93 16 49 H 0.19 -1.07 5.85 -2.91 -0.02 -1.08 16 50 H 0.10 -0.05 6.07 -2.39 -0.01 -0.06 16 51 H 0.40 -1.96 8.74 -74.06 -0.65 -2.60 16 52 H -0.28 0.27 7.11 99.48 0.71 0.98 16 53 H -0.27 0.74 6.74 99.48 0.67 1.41 16 54 H 0.18 -1.22 3.13 -2.91 -0.01 -1.22 16 Total: 0.00 -40.63 445.14 1.12 -39.51 By element: Atomic # 1 Polarization: -28.28 SS G_CDS: -1.18 Total: -29.46 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: 7.17 Total: 9.46 kcal Atomic # 7 Polarization: 1.11 SS G_CDS: -4.93 Total: -3.82 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: -2.00 Total: -13.41 kcal Atomic # 14 Polarization: -4.34 SS G_CDS: 2.07 Total: -2.27 kcal Total: -40.63 1.12 -39.51 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16624780_4549636.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.180 kcal (2) G-P(sol) polarization free energy of solvation -40.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds