Wall clock time and date at job start Sun Mar 7 2021 05:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86299 * 109.47520 * 2 1 4 4 C 1.50703 * 109.46880 * 239.99610 * 2 1 3 5 5 C 1.38245 * 119.94033 * 120.00248 * 4 2 1 6 6 C 1.38172 * 120.05216 * 180.02562 * 5 4 2 7 7 C 1.38708 * 119.94643 * 0.02562 * 6 5 4 8 8 O 1.35897 * 120.05613 * 180.02562 * 7 6 5 9 9 C 1.42893 * 117.00210 * 359.95120 * 8 7 6 10 10 C 1.50697 * 109.47560 * 180.02562 * 9 8 7 11 11 O 1.21282 * 119.99621 * 359.97438 * 10 9 8 12 12 N 1.34772 * 120.00525 * 179.97438 * 10 9 8 13 13 C 1.46504 * 120.00165 * 179.97438 * 12 10 9 14 14 H 1.08997 * 109.47172 * 324.99970 * 13 12 10 15 15 C 1.52996 * 109.47028 * 85.00390 * 13 12 10 16 16 C 1.53000 * 109.47383 * 179.97438 * 15 13 12 17 17 C 1.52996 * 109.47066 * 300.00058 * 16 15 13 18 18 H 1.09009 * 109.47119 * 299.99794 * 17 16 15 19 19 C 1.50697 * 109.47423 * 179.97438 * 17 16 15 20 20 N 1.30520 * 126.34886 * 144.68900 * 19 17 16 21 21 N 1.28594 * 109.66895 * 179.82716 * 20 19 17 22 22 C 1.30513 * 109.67710 * 0.44454 * 21 20 19 23 23 N 1.35491 * 107.30983 * 359.73271 * 22 21 20 24 24 C 1.52999 * 109.47404 * 59.99329 * 17 16 15 25 25 C 1.53000 * 109.47556 * 300.00371 * 24 17 16 26 26 C 1.38761 * 119.88682 * 359.97438 * 7 6 5 27 27 N 1.47997 * 120.02681 * 180.02562 * 26 7 6 28 28 O 1.21799 * 120.00165 * 179.97438 * 27 26 7 29 29 O 1.21804 * 120.00376 * 359.97438 * 27 26 7 30 30 C 1.38119 * 119.94332 * 0.02776 * 26 7 6 31 31 H 0.96700 * 113.99359 * 59.99812 * 1 2 3 32 32 H 1.09005 * 109.47291 * 120.00312 * 2 1 3 33 33 H 1.48501 * 109.99702 * 298.67922 * 3 2 1 34 34 H 1.48497 * 110.00330 * 59.99863 * 3 2 1 35 35 H 1.08002 * 119.97517 * 359.72420 * 5 4 2 36 36 H 1.08002 * 120.02512 * 179.97438 * 6 5 4 37 37 H 1.09004 * 109.47172 * 300.00411 * 9 8 7 38 38 H 1.09003 * 109.46925 * 60.00002 * 9 8 7 39 39 H 0.97005 * 120.00183 * 0.02562 * 12 10 9 40 40 H 1.09004 * 109.47238 * 300.00177 * 15 13 12 41 41 H 1.09003 * 109.47188 * 59.99468 * 15 13 12 42 42 H 1.08998 * 109.46926 * 179.97438 * 16 15 13 43 43 H 1.08997 * 109.46912 * 59.99522 * 16 15 13 44 44 H 1.08009 * 126.34826 * 179.73294 * 22 21 20 45 45 H 0.96995 * 126.98477 * 180.02562 * 23 22 21 46 46 H 1.09004 * 109.47576 * 179.97438 * 24 17 16 47 47 H 1.09009 * 109.46603 * 60.00148 * 24 17 16 48 48 H 1.08997 * 109.46912 * 299.99958 * 25 24 17 49 49 H 1.08999 * 109.47134 * 179.97438 * 25 24 17 50 50 H 1.07998 * 119.97129 * 179.97438 * 30 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2305 5 6 2.7260 -0.0376 -2.1397 6 6 3.1874 -0.6866 -3.2689 7 6 2.8521 -2.0143 -3.4900 8 8 3.3050 -2.6549 -4.5996 9 6 4.1215 -1.8998 -5.4969 10 6 4.5259 -2.7685 -6.6600 11 8 4.1521 -3.9209 -6.7149 12 7 5.3029 -2.2648 -7.6392 13 6 5.6965 -3.1094 -8.7697 14 1 5.8456 -4.1324 -8.4243 15 6 4.5957 -3.0851 -9.8320 16 6 5.0069 -3.9668 -11.0129 17 6 6.3092 -3.4366 -11.6159 18 1 6.1598 -2.4135 -11.9610 19 6 6.7146 -4.3053 -12.7786 20 7 7.2970 -3.9061 -13.8764 21 7 7.5002 -4.9134 -14.6495 22 6 7.0484 -5.9995 -14.0841 23 7 6.5369 -5.6447 -12.8807 24 6 7.4101 -3.4608 -10.5536 25 6 6.9989 -2.5792 -9.3727 26 6 2.0542 -2.6874 -2.5758 27 7 1.6950 -4.1042 -2.8085 28 8 0.9951 -4.6947 -2.0055 29 8 2.0994 -4.6797 -3.8029 30 6 1.5956 -2.0341 -1.4487 31 1 -0.3932 0.4417 -0.7651 32 1 1.7924 -0.5139 0.8900 33 1 1.5881 2.4585 -1.2243 34 1 1.5617 2.4679 1.2084 35 1 2.9825 0.9977 -1.9697 36 1 3.8079 -0.1603 -3.9791 37 1 3.5599 -1.0406 -5.8635 38 1 5.0132 -1.5546 -4.9735 39 1 5.6023 -1.3431 -7.5952 40 1 3.6677 -3.4624 -9.4022 41 1 4.4465 -2.0621 -10.1773 42 1 4.2224 -3.9498 -11.7694 43 1 5.1563 -4.9898 -10.6678 44 1 7.0769 -6.9964 -14.4988 45 1 6.1271 -6.2305 -12.2252 46 1 8.3381 -3.0835 -10.9833 47 1 7.5595 -4.4840 -10.2085 48 1 6.8494 -1.5562 -9.7178 49 1 7.7830 -2.5968 -8.6158 50 1 0.9742 -2.5575 -0.7371 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16624780_4549638.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:36:32 Heat of formation + Delta-G solvation = -1.554306 kcal Electronic energy + Delta-G solvation = -37406.986694 eV Core-core repulsion = 32212.996843 eV Total energy + Delta-G solvation = -5193.989850 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 404.162 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -44.14914 -43.28854 -41.78584 -40.99215 -39.76044 -38.99809 -37.61971 -37.46511 -35.75054 -34.58671 -33.49788 -32.61662 -32.20713 -31.86360 -30.44502 -28.85839 -27.81711 -26.56533 -24.82396 -24.17880 -23.85720 -23.27900 -22.81171 -22.16137 -21.57778 -20.92313 -20.51400 -19.77192 -19.30578 -19.18777 -18.63419 -18.48888 -18.20233 -17.54943 -17.31263 -17.07930 -16.83744 -16.39701 -16.34922 -16.18748 -16.03125 -15.69354 -15.58694 -15.19308 -15.11706 -14.86805 -14.72390 -14.14374 -13.97756 -13.92614 -13.70409 -13.60252 -13.27510 -13.21269 -12.83633 -12.70165 -12.41930 -12.39021 -12.35494 -12.28363 -12.25404 -12.19825 -12.18395 -11.84152 -11.81264 -11.65750 -11.51081 -11.29730 -10.93467 -10.83114 -10.75384 -10.25507 -10.11581 -9.78803 -4.91681 -1.30660 -0.23420 0.16477 0.36065 0.85637 1.22877 1.27411 1.50165 1.60693 1.84484 1.89659 2.02613 2.05691 2.34637 3.11636 3.16286 3.26875 3.35904 3.45687 3.53143 3.65802 3.68769 3.72187 3.77664 3.87370 3.95454 3.98577 4.03821 4.14525 4.22180 4.29810 4.33319 4.34258 4.40169 4.40773 4.44530 4.51328 4.56313 4.64870 4.66884 4.81289 4.84935 5.01702 5.01962 5.05621 5.08297 5.09535 5.17493 5.20066 5.27733 5.30876 5.47966 5.77703 6.22415 6.42323 6.44795 6.50441 7.20643 7.70083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.091 4.091 3 Si 0.789 3.211 4 C -0.148 4.148 5 C -0.005 4.005 6 C -0.188 4.188 7 C 0.195 3.805 8 O -0.291 6.291 9 C 0.022 3.978 10 C 0.509 3.491 11 O -0.564 6.564 12 N -0.704 5.704 13 C 0.147 3.853 14 H 0.068 0.932 15 C -0.122 4.122 16 C -0.109 4.109 17 C 0.004 3.996 18 H 0.112 0.888 19 C 0.190 3.810 20 N -0.341 5.341 21 N -0.354 5.354 22 C 0.168 3.832 23 N -0.570 5.570 24 C -0.104 4.104 25 C -0.113 4.113 26 C -0.105 4.105 27 N 0.034 4.966 28 O -0.207 6.207 29 O -0.170 6.170 30 C -0.004 4.004 31 H 0.389 0.611 32 H 0.127 0.873 33 H -0.261 1.261 34 H -0.310 1.310 35 H 0.189 0.811 36 H 0.207 0.793 37 H 0.142 0.858 38 H 0.146 0.854 39 H 0.423 0.577 40 H 0.052 0.948 41 H 0.086 0.914 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.260 0.740 45 H 0.445 0.555 46 H 0.073 0.927 47 H 0.066 0.934 48 H 0.095 0.905 49 H 0.086 0.914 50 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.511 10.800 2.642 12.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.360 6.360 2 C -0.198 4.198 3 Si 0.692 3.308 4 C -0.149 4.149 5 C -0.022 4.022 6 C -0.207 4.207 7 C 0.145 3.855 8 O -0.201 6.201 9 C -0.055 4.055 10 C 0.294 3.706 11 O -0.441 6.441 12 N -0.358 5.358 13 C 0.043 3.957 14 H 0.086 0.914 15 C -0.161 4.161 16 C -0.148 4.148 17 C -0.017 4.017 18 H 0.130 0.870 19 C -0.081 4.081 20 N -0.181 5.181 21 N -0.193 5.193 22 C -0.122 4.122 23 N -0.185 5.185 24 C -0.143 4.143 25 C -0.151 4.151 26 C -0.190 4.190 27 N 0.544 4.456 28 O -0.413 6.413 29 O -0.385 6.385 30 C -0.023 4.023 31 H 0.238 0.762 32 H 0.145 0.855 33 H -0.187 1.187 34 H -0.238 1.238 35 H 0.205 0.795 36 H 0.224 0.776 37 H 0.160 0.840 38 H 0.163 0.837 39 H 0.261 0.739 40 H 0.071 0.929 41 H 0.105 0.895 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.276 0.724 45 H 0.288 0.712 46 H 0.092 0.908 47 H 0.084 0.916 48 H 0.114 0.886 49 H 0.105 0.895 50 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 5.957 11.896 2.020 13.457 hybrid contribution -2.240 -2.228 0.578 3.212 sum 3.717 9.668 2.598 10.679 Atomic orbital electron populations 1.86635 1.18533 1.80450 1.50333 1.25520 0.83585 1.13079 0.97613 0.94183 0.89261 0.69930 0.77433 1.20371 1.02134 0.92576 0.99853 1.21724 0.89359 1.01299 0.89807 1.21817 1.06106 0.90454 1.02281 1.18959 0.89579 0.92035 0.84955 1.86465 1.63644 1.39760 1.30268 1.23158 0.98176 0.94559 0.89565 1.20467 0.78634 0.87631 0.83854 1.90847 1.54774 1.20129 1.78369 1.45688 1.51584 1.16921 1.21650 1.20992 0.94417 0.95170 0.85165 0.91382 1.21827 0.98144 1.01372 0.94770 1.21537 0.95739 0.99934 0.97604 1.19832 0.95787 0.97822 0.88221 0.87042 1.25268 1.00588 0.83536 0.98661 1.74180 1.18276 1.23665 1.01963 1.74186 1.21963 0.96857 1.26255 1.27279 0.97556 1.02815 0.84588 1.44117 1.46934 1.09120 1.18286 1.21494 0.97408 1.01152 0.94235 1.21726 0.95448 1.00705 0.97208 1.20861 1.13503 0.81512 1.03149 1.43901 0.98214 1.04009 0.99448 1.94509 1.36244 1.68361 1.42226 1.94669 1.56220 1.69356 1.18255 1.20834 0.94171 0.94784 0.92513 0.76160 0.85541 1.18652 1.23826 0.79458 0.77591 0.84012 0.83681 0.73852 0.92938 0.89535 0.91092 0.91231 0.72422 0.71227 0.90785 0.91565 0.88610 0.89523 0.83319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.12 12.77 -148.98 -1.90 -0.78 16 2 C -0.09 0.65 2.82 71.24 0.20 0.85 16 3 Si 0.79 -8.53 29.78 68.60 2.04 -6.49 16 4 C -0.15 1.01 5.39 -19.85 -0.11 0.90 16 5 C 0.00 0.06 8.66 22.26 0.19 0.25 16 6 C -0.19 2.36 9.04 22.37 0.20 2.56 16 7 C 0.19 -0.23 6.67 22.51 0.15 -0.08 16 8 O -0.29 -0.66 7.68 -63.37 -0.49 -1.14 16 9 C 0.02 -0.22 5.22 71.23 0.37 0.15 16 10 C 0.51 -1.22 7.87 87.66 0.69 -0.53 16 11 O -0.56 -6.29 16.16 16.00 0.26 -6.03 16 12 N -0.70 7.17 5.08 -442.53 -2.25 4.92 16 13 C 0.15 -1.09 2.46 44.99 0.11 -0.98 16 14 H 0.07 -0.11 7.58 -2.39 -0.02 -0.13 16 15 C -0.12 0.77 5.49 30.59 0.17 0.94 16 16 C -0.11 0.72 4.97 30.59 0.15 0.87 16 17 C 0.00 -0.02 2.66 -11.54 -0.03 -0.05 16 18 H 0.11 -0.60 8.14 -2.38 -0.02 -0.62 16 19 C 0.19 0.22 6.99 137.98 0.96 1.18 16 20 N -0.34 -3.45 12.21 -50.15 -0.61 -4.06 16 21 N -0.35 -3.57 12.21 -59.99 -0.73 -4.30 16 22 C 0.17 -0.07 13.19 180.12 2.37 2.30 16 23 N -0.57 2.11 5.96 -189.86 -1.13 0.98 16 24 C -0.10 0.78 5.18 30.59 0.16 0.94 16 25 C -0.11 1.29 5.39 30.60 0.16 1.45 16 26 C -0.10 -0.59 6.87 36.48 0.25 -0.34 16 27 N 0.03 0.53 4.45 -46.25 -0.21 0.33 16 28 O -0.21 -3.69 18.45 18.89 0.35 -3.34 16 29 O -0.17 -3.42 17.24 25.60 0.44 -2.98 16 30 C 0.00 0.00 9.11 22.25 0.20 0.20 16 31 H 0.39 -3.26 8.70 -74.06 -0.64 -3.90 16 32 H 0.13 -0.96 7.96 -2.38 -0.02 -0.98 16 33 H -0.26 2.52 7.11 99.48 0.71 3.23 16 34 H -0.31 0.18 7.11 99.48 0.71 0.88 16 35 H 0.19 -3.86 4.87 -2.91 -0.01 -3.87 16 36 H 0.21 -4.70 6.30 -2.91 -0.02 -4.72 16 37 H 0.14 -2.61 7.66 -2.38 -0.02 -2.62 16 38 H 0.15 -2.73 7.66 -2.39 -0.02 -2.75 16 39 H 0.42 -7.89 8.60 -92.70 -0.80 -8.69 16 40 H 0.05 -0.03 8.14 -2.39 -0.02 -0.05 16 41 H 0.09 -0.78 8.14 -2.39 -0.02 -0.80 16 42 H 0.07 -0.37 8.14 -2.39 -0.02 -0.39 16 43 H 0.07 -0.50 7.52 -2.39 -0.02 -0.52 16 44 H 0.26 -2.61 8.06 -2.91 -0.02 -2.64 16 45 H 0.44 -4.67 8.28 -92.71 -0.77 -5.44 16 46 H 0.07 -0.40 8.14 -2.39 -0.02 -0.42 16 47 H 0.07 -0.46 8.14 -2.38 -0.02 -0.48 16 48 H 0.10 -1.39 8.14 -2.39 -0.02 -1.41 16 49 H 0.09 -1.06 8.14 -2.39 -0.02 -1.08 16 50 H 0.15 0.45 7.61 -2.91 -0.02 0.43 16 Total: 0.00 -50.12 420.14 0.87 -49.25 By element: Atomic # 1 Polarization: -35.83 SS G_CDS: -1.12 Total: -36.95 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: 6.22 Total: 10.61 kcal Atomic # 7 Polarization: 2.79 SS G_CDS: -4.93 Total: -2.14 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: -1.34 Total: -14.28 kcal Atomic # 14 Polarization: -8.53 SS G_CDS: 2.04 Total: -6.49 kcal Total: -50.12 0.87 -49.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16624780_4549638.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.698 kcal (2) G-P(sol) polarization free energy of solvation -50.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds