Wall clock time and date at job start Sun Mar 7 2021 05:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86302 * 109.46897 * 2 1 4 4 C 1.50700 * 109.47440 * 239.99541 * 2 1 3 5 5 C 1.38242 * 119.96979 * 119.97587 * 4 2 1 6 6 C 1.38293 * 120.11311 * 180.02562 * 5 4 2 7 7 C 1.38123 * 120.05117 * 359.77169 * 6 5 4 8 8 C 1.38757 * 119.94210 * 0.50347 * 7 6 5 9 9 O 1.35904 * 120.04956 * 179.74331 * 8 7 6 10 10 C 1.42891 * 117.00388 * 359.73217 * 9 8 7 11 11 C 1.50697 * 109.47367 * 179.97438 * 10 9 8 12 12 O 1.21282 * 119.99877 * 359.97438 * 11 10 9 13 13 N 1.34780 * 120.00390 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00154 * 179.97438 * 13 11 10 15 15 H 1.08999 * 109.47525 * 35.00177 * 14 13 11 16 16 C 1.53002 * 109.47152 * 155.00328 * 14 13 11 17 17 C 1.52998 * 109.47510 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.46824 * 299.99883 * 17 16 14 19 19 H 1.09005 * 109.47314 * 299.99900 * 18 17 16 20 20 C 1.50703 * 109.47311 * 179.97438 * 18 17 16 21 21 N 1.30523 * 126.34553 * 94.68583 * 20 18 17 22 22 N 1.28588 * 109.67223 * 180.26646 * 21 20 18 23 23 C 1.30519 * 109.67901 * 0.02562 * 22 21 20 24 24 N 1.35495 * 126.34870 * 275.00397 * 20 18 17 25 25 C 1.53000 * 109.47506 * 59.99836 * 18 17 16 26 26 C 1.53001 * 109.47316 * 275.00293 * 14 13 11 27 27 C 1.38157 * 119.97459 * 300.00085 * 4 2 1 28 28 H 0.96696 * 113.99635 * 60.00204 * 1 2 3 29 29 H 1.09001 * 109.46789 * 119.99580 * 2 1 3 30 30 H 1.48500 * 109.99771 * 298.67586 * 3 2 1 31 31 H 1.48497 * 110.00221 * 59.99862 * 3 2 1 32 32 H 1.08006 * 119.94416 * 0.03008 * 5 4 2 33 33 H 1.07993 * 119.97286 * 180.02562 * 6 5 4 34 34 H 1.08003 * 120.02658 * 180.27973 * 7 6 5 35 35 H 1.09000 * 109.47724 * 59.99808 * 10 9 8 36 36 H 1.09000 * 109.47435 * 299.99656 * 10 9 8 37 37 H 0.96998 * 119.99892 * 0.02562 * 13 11 10 38 38 H 1.09001 * 109.47386 * 59.99933 * 16 14 13 39 39 H 1.09004 * 109.47016 * 299.99811 * 16 14 13 40 40 H 1.08998 * 109.47557 * 180.02562 * 17 16 14 41 41 H 1.09001 * 109.47165 * 59.99413 * 17 16 14 42 42 H 1.07994 * 126.34922 * 180.02562 * 23 22 21 43 43 H 0.96998 * 126.97396 * 359.73450 * 24 20 18 44 44 H 1.09005 * 109.46782 * 59.99738 * 25 18 17 45 45 H 1.08996 * 109.47631 * 179.97438 * 25 18 17 46 46 H 1.09001 * 109.46866 * 299.99849 * 26 14 13 47 47 H 1.08991 * 109.47160 * 60.00156 * 26 14 13 48 48 H 1.08003 * 120.03174 * 359.95896 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 2.7258 -0.0380 -2.1402 6 6 3.1880 -0.6869 -3.2706 7 6 2.8607 -2.0106 -3.4907 8 6 2.0588 -2.6862 -2.5818 9 8 1.7312 -3.9871 -2.7989 10 6 2.2423 -4.5954 -3.9865 11 6 1.7790 -6.0277 -4.0567 12 8 1.0803 -6.4829 -3.1760 13 7 2.1411 -6.8029 -5.0981 14 6 1.6912 -8.1955 -5.1660 15 1 0.6874 -8.2738 -4.7483 16 6 1.6738 -8.6552 -6.6252 17 6 1.2033 -10.1094 -6.6962 18 6 2.1594 -10.9944 -5.8940 19 1 3.1633 -10.9165 -6.3115 20 6 1.6957 -12.4267 -5.9634 21 7 2.1074 -13.3330 -6.8077 22 7 1.4963 -14.4421 -6.5842 23 6 0.6667 -14.2938 -5.5876 24 7 0.7699 -13.0106 -5.1648 25 6 2.1769 -10.5347 -4.4348 26 6 2.6477 -9.0802 -4.3639 27 6 1.5974 -2.0332 -1.4484 28 1 -0.3932 0.4417 -0.7651 29 1 1.7923 -0.5138 0.8900 30 1 1.5879 2.4585 -1.2243 31 1 1.5614 2.4679 1.2084 32 1 2.9859 0.9961 -1.9679 33 1 3.8088 -0.1595 -3.9796 34 1 3.2257 -2.5184 -4.3713 35 1 3.3318 -4.5668 -3.9696 36 1 1.8781 -4.0524 -4.8586 37 1 2.7002 -6.4390 -5.8023 38 1 2.6775 -8.5770 -7.0428 39 1 0.9923 -8.0250 -7.1966 40 1 1.1913 -10.4371 -7.7357 41 1 0.1995 -10.1873 -6.2786 42 1 0.0188 -15.0533 -5.1756 43 1 0.2802 -12.5944 -4.4383 44 1 1.1730 -10.6126 -4.0173 45 1 2.8576 -11.1655 -3.8632 46 1 3.6515 -9.0019 -4.7816 47 1 2.6601 -8.7527 -3.3244 48 1 0.9770 -2.5583 -0.7372 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16624780_4860298.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:36:48 Heat of formation + Delta-G solvation = -5.794646 kcal Electronic energy + Delta-G solvation = -30646.640911 eV Core-core repulsion = 26283.483622 eV Total energy + Delta-G solvation = -4363.157290 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.168 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -44.16052 -41.61572 -40.88843 -39.52406 -38.81051 -37.34870 -35.78429 -34.60138 -32.69495 -32.46593 -31.88967 -31.60411 -30.14298 -28.58184 -26.81467 -24.73824 -24.08417 -23.66865 -23.35343 -22.61125 -22.04037 -21.53653 -20.88966 -19.35616 -19.31033 -18.54573 -17.89250 -17.43579 -17.33148 -17.05843 -16.89490 -16.77049 -16.36695 -16.25899 -16.02533 -15.63213 -15.45910 -15.11826 -15.03841 -14.84958 -14.69325 -14.15369 -14.10879 -13.95862 -13.77607 -13.43121 -13.29117 -13.00057 -12.85208 -12.60314 -12.43101 -12.30666 -12.21272 -12.10355 -12.02791 -11.85207 -11.68862 -11.61265 -11.53148 -11.31464 -10.96273 -10.69048 -10.27026 -10.16014 -9.92610 -9.28258 -4.91126 0.20874 0.39599 0.84488 1.27651 1.44047 1.49862 1.61914 1.83509 1.88599 1.96875 2.58349 2.67148 3.15516 3.39475 3.47620 3.59272 3.64371 3.66407 3.84245 3.85373 3.96869 4.01673 4.06681 4.12618 4.13914 4.19734 4.25368 4.30485 4.31245 4.37805 4.38912 4.42418 4.49562 4.54816 4.63495 4.65214 4.78196 4.98719 4.99226 4.99544 5.03332 5.07014 5.15211 5.24520 5.25114 5.27627 5.37525 5.43917 5.45455 5.69869 6.21585 6.28254 6.45539 6.48066 7.13259 7.69220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.094 4.094 3 Si 0.784 3.216 4 C -0.082 4.082 5 C -0.157 4.157 6 C -0.071 4.071 7 C -0.202 4.202 8 C 0.114 3.886 9 O -0.323 6.323 10 C 0.036 3.964 11 C 0.513 3.487 12 O -0.572 6.572 13 N -0.705 5.705 14 C 0.146 3.854 15 H 0.069 0.931 16 C -0.114 4.114 17 C -0.103 4.103 18 C 0.004 3.996 19 H 0.111 0.889 20 C 0.191 3.809 21 N -0.341 5.341 22 N -0.354 5.354 23 C 0.168 3.832 24 N -0.570 5.570 25 C -0.108 4.108 26 C -0.123 4.123 27 C -0.150 4.150 28 H 0.386 0.614 29 H 0.120 0.880 30 H -0.277 1.277 31 H -0.305 1.305 32 H 0.149 0.851 33 H 0.163 0.837 34 H 0.161 0.839 35 H 0.126 0.874 36 H 0.124 0.876 37 H 0.422 0.578 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.261 0.739 43 H 0.445 0.555 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.085 0.915 47 H 0.053 0.947 48 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.077 5.090 -3.173 7.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.202 4.202 3 Si 0.689 3.311 4 C -0.083 4.083 5 C -0.175 4.175 6 C -0.088 4.088 7 C -0.220 4.220 8 C 0.069 3.931 9 O -0.237 6.237 10 C -0.042 4.042 11 C 0.300 3.700 12 O -0.450 6.450 13 N -0.359 5.359 14 C 0.042 3.958 15 H 0.087 0.913 16 C -0.152 4.152 17 C -0.142 4.142 18 C -0.017 4.017 19 H 0.129 0.871 20 C -0.080 4.080 21 N -0.181 5.181 22 N -0.193 5.193 23 C -0.122 4.122 24 N -0.184 5.184 25 C -0.147 4.147 26 C -0.161 4.161 27 C -0.169 4.169 28 H 0.235 0.765 29 H 0.137 0.863 30 H -0.203 1.203 31 H -0.234 1.234 32 H 0.166 0.834 33 H 0.180 0.820 34 H 0.179 0.821 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.260 0.740 38 H 0.113 0.887 39 H 0.103 0.897 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.276 0.724 43 H 0.288 0.712 44 H 0.089 0.911 45 H 0.091 0.909 46 H 0.104 0.896 47 H 0.072 0.928 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 4.179 4.378 -3.161 6.828 hybrid contribution -2.128 0.176 0.836 2.293 sum 2.052 4.554 -2.326 5.510 Atomic orbital electron populations 1.86579 1.18702 1.80546 1.50120 1.25463 0.83438 1.12801 0.98490 0.93896 0.90032 0.70754 0.76447 1.20127 0.97934 0.93207 0.97019 1.21217 1.00043 1.00950 0.95267 1.21337 0.97310 0.93491 0.96703 1.21640 1.02278 0.96862 1.01220 1.19190 0.95745 0.82957 0.95252 1.86120 1.71377 1.23278 1.42882 1.22749 1.01995 0.90794 0.88629 1.20514 0.79740 0.87910 0.81883 1.90762 1.38891 1.75543 1.39790 1.45738 1.53705 1.11947 1.24510 1.21022 0.98189 0.79581 0.97028 0.91256 1.21732 1.04293 0.95337 0.93857 1.21486 0.98339 0.93812 1.00566 1.19829 1.01502 0.82574 0.97805 0.87091 1.25238 0.92550 0.98882 0.91369 1.74182 1.23587 0.97036 1.23279 1.74187 1.09951 1.18545 1.16584 1.27286 1.01658 0.87563 0.95684 1.44109 1.33246 1.11143 1.29926 1.21545 1.02600 0.96367 0.94202 1.21838 1.00241 0.93673 1.00369 1.20279 1.04059 0.94904 0.97613 0.76470 0.86268 1.20305 1.23405 0.83407 0.81981 0.82133 0.85657 0.85857 0.74022 0.88738 0.89700 0.90790 0.91450 0.72368 0.71212 0.91094 0.90892 0.89620 0.92801 0.87061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.76 12.77 -148.98 -1.90 -4.66 16 2 C -0.09 -0.10 2.82 71.24 0.20 0.10 16 3 Si 0.78 -1.85 29.79 68.60 2.04 0.19 16 4 C -0.08 -0.12 5.39 -19.88 -0.11 -0.23 16 5 C -0.16 0.45 8.67 22.28 0.19 0.65 16 6 C -0.07 0.37 10.04 22.26 0.22 0.59 16 7 C -0.20 0.75 9.04 22.37 0.20 0.96 16 8 C 0.11 0.37 6.69 22.51 0.15 0.52 16 9 O -0.32 -1.83 9.67 -73.43 -0.71 -2.54 16 10 C 0.04 -0.16 5.22 71.23 0.37 0.21 16 11 C 0.51 0.23 7.87 87.66 0.69 0.92 16 12 O -0.57 -6.94 16.16 16.00 0.26 -6.68 16 13 N -0.71 5.21 5.08 -442.54 -2.25 2.97 16 14 C 0.15 -0.87 2.45 44.99 0.11 -0.76 16 15 H 0.07 -0.05 7.58 -2.39 -0.02 -0.07 16 16 C -0.11 1.13 5.39 30.59 0.16 1.29 16 17 C -0.10 0.69 5.19 30.59 0.16 0.85 16 18 C 0.00 -0.02 2.66 -11.54 -0.03 -0.05 16 19 H 0.11 -0.52 8.14 -2.38 -0.02 -0.54 16 20 C 0.19 0.26 6.99 137.98 0.96 1.22 16 21 N -0.34 -3.54 12.21 -50.15 -0.61 -4.15 16 22 N -0.35 -3.61 12.21 -59.99 -0.73 -4.34 16 23 C 0.17 -0.08 13.19 180.11 2.38 2.29 16 24 N -0.57 2.13 5.96 -189.86 -1.13 1.00 16 25 C -0.11 0.68 4.97 30.61 0.15 0.84 16 26 C -0.12 0.67 5.50 30.61 0.17 0.84 16 27 C -0.15 -0.85 9.55 22.36 0.21 -0.64 16 28 H 0.39 -0.42 8.70 -74.06 -0.64 -1.06 16 29 H 0.12 0.06 7.96 -2.39 -0.02 0.04 16 30 H -0.28 -0.12 7.11 99.48 0.71 0.58 16 31 H -0.31 -1.76 7.11 99.48 0.71 -1.05 16 32 H 0.15 -1.07 4.87 -2.91 -0.01 -1.09 16 33 H 0.16 -1.84 8.06 -2.91 -0.02 -1.87 16 34 H 0.16 -1.74 6.30 -2.91 -0.02 -1.76 16 35 H 0.13 -1.38 7.65 -2.39 -0.02 -1.40 16 36 H 0.12 -1.33 7.67 -2.39 -0.02 -1.35 16 37 H 0.42 -6.31 8.60 -92.71 -0.80 -7.10 16 38 H 0.09 -1.20 8.14 -2.39 -0.02 -1.22 16 39 H 0.08 -0.88 8.14 -2.38 -0.02 -0.90 16 40 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 41 H 0.07 -0.43 8.14 -2.39 -0.02 -0.45 16 42 H 0.26 -2.66 8.06 -2.91 -0.02 -2.68 16 43 H 0.44 -4.76 8.28 -92.71 -0.77 -5.53 16 44 H 0.07 -0.52 7.51 -2.38 -0.02 -0.54 16 45 H 0.07 -0.39 8.14 -2.39 -0.02 -0.41 16 46 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 47 H 0.05 -0.01 8.14 -2.39 -0.02 -0.03 16 48 H 0.11 1.03 8.06 -2.91 -0.02 1.01 16 Total: 0.00 -37.10 394.12 0.02 -37.07 By element: Atomic # 1 Polarization: -27.30 SS G_CDS: -1.15 Total: -28.45 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: 6.20 Total: 9.59 kcal Atomic # 7 Polarization: 0.20 SS G_CDS: -4.72 Total: -4.53 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: -2.35 Total: -13.88 kcal Atomic # 14 Polarization: -1.85 SS G_CDS: 2.04 Total: 0.19 kcal Total: -37.10 0.02 -37.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16624780_4860298.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.279 kcal (2) G-P(sol) polarization free energy of solvation -37.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds