Wall clock time and date at job start Sun Mar 7 2021 05:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35899 * 117.00185 * 2 1 4 4 C 1.38614 * 120.03051 * 180.27165 * 3 2 1 5 5 C 1.38648 * 119.88993 * 180.25285 * 4 3 2 6 6 O 1.35904 * 120.02749 * 179.75066 * 5 4 3 7 7 C 1.42903 * 116.99628 * 359.72745 * 6 5 4 8 8 C 1.50701 * 109.46878 * 179.97438 * 7 6 5 9 9 O 1.21280 * 119.99781 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99795 * 179.97438 * 8 7 6 11 11 C 1.46497 * 119.99566 * 180.02562 * 10 8 7 12 12 H 1.08996 * 109.47535 * 325.00618 * 11 10 8 13 13 C 1.53003 * 109.47218 * 85.00262 * 11 10 8 14 14 C 1.52992 * 109.47371 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47602 * 300.00379 * 14 13 11 16 16 H 1.09006 * 109.47022 * 300.00206 * 15 14 13 17 17 C 1.50701 * 109.47444 * 179.97438 * 15 14 13 18 18 N 1.30522 * 126.34370 * 144.68825 * 17 15 14 19 19 N 1.28592 * 109.67011 * 179.82555 * 18 17 15 20 20 C 1.30522 * 109.67665 * 0.44765 * 19 18 17 21 21 N 1.35490 * 126.34961 * 325.00068 * 17 15 14 22 22 C 1.53003 * 109.47067 * 59.99435 * 15 14 13 23 23 C 1.52997 * 109.47181 * 300.00423 * 22 15 14 24 24 C 1.38750 * 119.94746 * 359.48026 * 5 4 3 25 25 C 1.50698 * 119.97427 * 180.23034 * 24 5 4 26 26 O 1.42907 * 109.47188 * 74.99931 * 25 24 5 27 27 Si 1.86301 * 109.47254 * 194.99446 * 25 24 5 28 28 C 1.38196 * 120.05357 * 0.24706 * 24 5 4 29 29 C 1.38150 * 120.10864 * 0.02735 * 28 24 5 30 30 H 1.09000 * 109.47073 * 59.99754 * 1 2 3 31 31 H 1.09001 * 109.47382 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47423 * 300.00062 * 1 2 3 33 33 H 1.08005 * 120.05376 * 359.97438 * 4 3 2 34 34 H 1.09002 * 109.47382 * 59.99787 * 7 6 5 35 35 H 1.09001 * 109.46938 * 299.99774 * 7 6 5 36 36 H 0.96995 * 120.00011 * 0.02562 * 10 8 7 37 37 H 1.08998 * 109.47302 * 299.99899 * 13 11 10 38 38 H 1.09006 * 109.46570 * 59.99667 * 13 11 10 39 39 H 1.08997 * 109.47506 * 180.02562 * 14 13 11 40 40 H 1.09006 * 109.47100 * 60.00538 * 14 13 11 41 41 H 1.07991 * 126.35245 * 179.73038 * 20 19 18 42 42 H 0.96999 * 126.97522 * 0.02562 * 21 17 15 43 43 H 1.09006 * 109.47034 * 180.02562 * 22 15 14 44 44 H 1.09005 * 109.47087 * 60.00589 * 22 15 14 45 45 H 1.08996 * 109.47340 * 299.99501 * 23 22 15 46 46 H 1.09007 * 109.46591 * 179.97438 * 23 22 15 47 47 H 1.09001 * 109.47045 * 314.99785 * 25 24 5 48 48 H 0.96695 * 114.00140 * 60.00141 * 26 25 24 49 49 H 1.48499 * 109.99965 * 179.97438 * 27 25 24 50 50 H 1.48502 * 110.00117 * 301.32303 * 27 25 24 51 51 H 1.07999 * 119.94983 * 180.02562 * 28 24 5 52 52 H 1.08009 * 119.97354 * 179.97438 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4302 1.2841 -0.0057 5 6 4.0567 2.5210 -0.0004 6 8 5.4136 2.5960 -0.0008 7 6 6.1316 1.3604 -0.0008 8 6 7.6125 1.6401 -0.0020 9 8 8.0134 2.7847 -0.0022 10 7 8.4912 0.6181 -0.0017 11 6 9.9307 0.8900 -0.0022 12 1 10.1314 1.7843 -0.5921 13 6 10.4090 1.1089 1.4346 14 6 11.9124 1.3922 1.4341 15 6 12.6557 0.2016 0.8250 16 1 12.4546 -0.6927 1.4150 17 6 14.1366 0.4810 0.8240 18 7 15.0885 -0.3919 1.0123 19 7 16.2318 0.1924 0.9416 20 6 16.0610 1.4663 0.7143 21 7 14.7264 1.6857 0.6332 22 6 12.1774 -0.0173 -0.6118 23 6 10.6739 -0.3007 -0.6113 24 6 3.2971 3.6821 -0.0003 25 6 3.9774 5.0268 0.0003 26 8 4.5040 5.2948 -1.3009 27 14 2.7437 6.3467 0.4547 28 6 1.9172 3.6065 -0.0003 29 6 1.2906 2.3753 0.0001 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 4.0197 0.3791 -0.0097 34 1 5.8696 0.7879 -0.8906 35 1 5.8702 0.7883 0.8894 36 1 8.1705 -0.2973 -0.0011 37 1 9.8793 1.9568 1.8686 38 1 10.2082 0.2145 2.0245 39 1 12.2532 1.5476 2.4577 40 1 12.1135 2.2864 0.8441 41 1 16.8390 2.2080 0.6103 42 1 14.2831 2.5333 0.4718 43 1 12.7066 -0.8658 -1.0456 44 1 12.3784 0.8769 -1.2019 45 1 10.4729 -1.1949 -0.0213 46 1 10.3332 -0.4561 -1.6350 47 1 4.7896 5.0227 0.7272 48 1 3.8357 5.3134 -1.9995 49 1 3.4025 7.6776 0.4594 50 1 1.6153 6.3413 -0.5106 51 1 1.3277 4.5114 -0.0007 52 1 0.2120 2.3187 0.0005 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16624780_4974312.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:36:57 Heat of formation + Delta-G solvation = -38.443766 kcal Electronic energy + Delta-G solvation = -35643.862202 eV Core-core repulsion = 30805.069329 eV Total energy + Delta-G solvation = -4838.792873 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 389.183 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -44.16167 -41.84932 -41.12034 -40.04747 -39.24340 -38.31585 -37.00843 -35.77898 -34.60100 -32.67266 -32.28721 -31.89590 -31.41153 -30.20333 -28.71658 -28.30457 -26.13244 -24.83321 -24.13877 -23.63425 -23.21094 -22.49483 -22.16312 -21.57939 -20.91538 -19.96172 -19.31829 -18.64421 -18.14280 -17.85424 -17.52161 -17.35646 -16.97570 -16.86312 -16.67152 -16.49703 -16.38371 -16.12497 -16.00953 -15.61300 -15.45346 -15.18072 -15.08703 -14.91148 -14.67744 -14.50679 -14.09357 -13.78330 -13.75034 -13.44895 -13.33504 -13.29730 -13.14123 -12.85304 -12.49289 -12.42138 -12.32126 -12.28647 -12.21382 -12.02767 -11.85346 -11.69087 -11.65693 -11.62998 -11.53374 -11.31740 -10.96155 -10.51637 -10.27107 -10.15773 -9.70163 -9.10459 -4.93064 0.19968 0.30748 0.84379 1.31661 1.44208 1.44873 1.55647 1.83431 1.88369 1.95826 2.25060 2.55820 2.58395 3.15285 3.47248 3.49549 3.59895 3.64222 3.72441 3.80402 3.83903 3.94973 3.97653 4.03759 4.06527 4.12087 4.17314 4.19398 4.30217 4.30892 4.34848 4.38812 4.40631 4.42149 4.42597 4.46469 4.49787 4.63835 4.66241 4.77761 4.79341 4.98831 4.99412 5.02196 5.02843 5.06691 5.14842 5.23533 5.24329 5.27347 5.27899 5.43273 5.48019 6.13594 6.21440 6.36132 6.46219 6.56998 7.12923 7.69069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.330 6.330 3 C 0.164 3.836 4 C -0.252 4.252 5 C 0.178 3.822 6 O -0.302 6.302 7 C 0.033 3.967 8 C 0.515 3.485 9 O -0.566 6.566 10 N -0.707 5.707 11 C 0.147 3.853 12 H 0.069 0.931 13 C -0.122 4.122 14 C -0.108 4.108 15 C 0.004 3.996 16 H 0.111 0.889 17 C 0.191 3.809 18 N -0.341 5.341 19 N -0.354 5.354 20 C 0.168 3.832 21 N -0.570 5.570 22 C -0.103 4.103 23 C -0.115 4.115 24 C -0.195 4.195 25 C -0.076 4.076 26 O -0.549 6.549 27 Si 0.779 3.221 28 C -0.042 4.042 29 C -0.238 4.238 30 H 0.066 0.934 31 H 0.116 0.884 32 H 0.070 0.930 33 H 0.154 0.846 34 H 0.118 0.882 35 H 0.124 0.876 36 H 0.420 0.580 37 H 0.054 0.946 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.261 0.739 42 H 0.445 0.555 43 H 0.073 0.927 44 H 0.067 0.933 45 H 0.094 0.906 46 H 0.083 0.917 47 H 0.098 0.902 48 H 0.381 0.619 49 H -0.308 1.308 50 H -0.263 1.263 51 H 0.155 0.845 52 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.360 -2.033 0.600 8.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.243 6.243 3 C 0.118 3.882 4 C -0.271 4.271 5 C 0.131 3.869 6 O -0.214 6.214 7 C -0.045 4.045 8 C 0.301 3.699 9 O -0.443 6.443 10 N -0.360 5.360 11 C 0.042 3.958 12 H 0.088 0.912 13 C -0.161 4.161 14 C -0.147 4.147 15 C -0.017 4.017 16 H 0.129 0.871 17 C -0.080 4.080 18 N -0.181 5.181 19 N -0.192 5.192 20 C -0.122 4.122 21 N -0.184 5.184 22 C -0.142 4.142 23 C -0.153 4.153 24 C -0.197 4.197 25 C -0.183 4.183 26 O -0.357 6.357 27 Si 0.683 3.317 28 C -0.059 4.059 29 C -0.257 4.257 30 H 0.085 0.915 31 H 0.135 0.865 32 H 0.089 0.911 33 H 0.171 0.829 34 H 0.136 0.864 35 H 0.141 0.859 36 H 0.258 0.742 37 H 0.073 0.927 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.277 0.723 42 H 0.288 0.712 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.112 0.888 46 H 0.102 0.898 47 H 0.116 0.884 48 H 0.230 0.770 49 H -0.236 1.236 50 H -0.189 1.189 51 H 0.172 0.828 52 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -6.913 -1.996 0.963 7.260 hybrid contribution -0.493 1.057 -1.508 1.906 sum -7.406 -0.939 -0.545 7.485 Atomic orbital electron populations 1.23402 0.76019 1.05712 1.02674 1.86055 1.23738 1.26595 1.87925 1.18880 0.91694 0.84946 0.92670 1.20559 0.93369 0.97463 1.15686 1.18571 0.81784 0.93105 0.93412 1.86222 1.15425 1.31681 1.88090 1.22764 0.88737 0.86475 1.06557 1.20403 0.88388 0.85282 0.75804 1.90772 1.80660 1.23121 1.49785 1.45747 1.05937 1.09577 1.74782 1.21024 0.78675 0.99382 0.96678 0.91248 1.21827 0.94824 1.02781 0.96659 1.21533 0.94624 0.96859 1.01652 1.19825 0.81610 1.01087 0.99200 0.87109 1.25219 0.98699 0.82314 1.01777 1.74185 0.95193 1.27918 1.20799 1.74189 1.18791 1.06076 1.20179 1.27288 0.86175 0.97162 1.01555 1.44107 1.07791 1.12066 1.54450 1.21484 0.95695 1.02901 0.94091 1.21737 0.93413 0.97491 1.02643 1.19597 0.93477 0.93987 1.12613 1.25128 1.06220 0.99637 0.87360 1.86647 1.38540 1.93053 1.17435 0.94119 0.75500 0.73470 0.88656 1.20941 0.92068 0.98774 0.94132 1.21397 1.01598 0.91279 1.11424 0.91511 0.86543 0.91108 0.82869 0.86428 0.85879 0.74171 0.92704 0.89683 0.90826 0.91073 0.72347 0.71213 0.90782 0.91428 0.88785 0.89805 0.88354 0.77031 1.23639 1.18938 0.82778 0.82600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.11 9.81 113.37 1.11 1.00 16 2 O -0.33 -0.02 10.49 -92.42 -0.97 -0.99 16 3 C 0.16 0.15 6.68 22.49 0.15 0.30 16 4 C -0.25 -0.31 8.97 22.46 0.20 -0.11 16 5 C 0.18 0.80 6.66 22.49 0.15 0.95 16 6 O -0.30 -2.11 8.99 -73.43 -0.66 -2.77 16 7 C 0.03 -0.06 5.22 71.24 0.37 0.31 16 8 C 0.52 1.21 7.87 87.66 0.69 1.90 16 9 O -0.57 -7.67 16.16 16.01 0.26 -7.42 16 10 N -0.71 3.87 5.08 -442.54 -2.25 1.62 16 11 C 0.15 -0.67 2.45 44.99 0.11 -0.55 16 12 H 0.07 0.04 7.58 -2.39 -0.02 0.03 16 13 C -0.12 0.54 5.49 30.59 0.17 0.71 16 14 C -0.11 0.59 4.97 30.59 0.15 0.74 16 15 C 0.00 -0.01 2.66 -11.54 -0.03 -0.05 16 16 H 0.11 -0.42 8.14 -2.38 -0.02 -0.44 16 17 C 0.19 0.39 6.99 137.98 0.96 1.35 16 18 N -0.34 -3.74 12.21 -50.15 -0.61 -4.35 16 19 N -0.35 -3.78 12.21 -60.00 -0.73 -4.51 16 20 C 0.17 0.00 13.19 180.11 2.38 2.38 16 21 N -0.57 1.79 5.96 -189.87 -1.13 0.66 16 22 C -0.10 0.58 5.18 30.59 0.16 0.74 16 23 C -0.11 0.97 5.39 30.59 0.16 1.14 16 24 C -0.20 -0.68 5.27 -19.75 -0.10 -0.78 16 25 C -0.08 -0.39 2.37 71.24 0.17 -0.22 16 26 O -0.55 -4.95 12.88 -148.98 -1.92 -6.87 16 27 Si 0.78 0.05 30.24 68.60 2.07 2.12 16 28 C -0.04 0.03 8.65 22.24 0.19 0.23 16 29 C -0.24 0.38 9.04 22.38 0.20 0.58 16 30 H 0.07 -0.57 7.66 -2.39 -0.02 -0.59 16 31 H 0.12 -1.15 8.14 -2.39 -0.02 -1.17 16 32 H 0.07 -0.64 7.66 -2.39 -0.02 -0.66 16 33 H 0.15 -0.50 6.30 -2.91 -0.02 -0.52 16 34 H 0.12 -0.80 7.65 -2.39 -0.02 -0.82 16 35 H 0.12 -0.96 7.67 -2.39 -0.02 -0.98 16 36 H 0.42 -5.31 8.60 -92.71 -0.80 -6.11 16 37 H 0.05 0.04 8.14 -2.39 -0.02 0.02 16 38 H 0.08 -0.57 8.14 -2.38 -0.02 -0.59 16 39 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 40 H 0.07 -0.46 7.52 -2.38 -0.02 -0.48 16 41 H 0.26 -2.55 8.06 -2.92 -0.02 -2.57 16 42 H 0.44 -4.49 8.28 -92.71 -0.77 -5.26 16 43 H 0.07 -0.26 8.14 -2.38 -0.02 -0.28 16 44 H 0.07 -0.37 8.14 -2.38 -0.02 -0.39 16 45 H 0.09 -1.06 8.14 -2.39 -0.02 -1.08 16 46 H 0.08 -0.74 8.14 -2.38 -0.02 -0.76 16 47 H 0.10 0.79 7.82 -2.39 -0.02 0.77 16 48 H 0.38 0.63 8.70 -74.06 -0.64 -0.01 16 49 H -0.31 -2.60 7.11 99.48 0.71 -1.89 16 50 H -0.26 -0.12 6.68 99.48 0.66 0.54 16 51 H 0.16 -0.75 4.85 -2.91 -0.01 -0.76 16 52 H 0.16 -1.03 6.29 -2.91 -0.02 -1.05 16 Total: 0.00 -37.32 422.83 0.04 -37.28 By element: Atomic # 1 Polarization: -24.18 SS G_CDS: -1.21 Total: -25.40 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: 7.20 Total: 10.62 kcal Atomic # 7 Polarization: -1.85 SS G_CDS: -4.72 Total: -6.58 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -3.29 Total: -18.05 kcal Atomic # 14 Polarization: 0.05 SS G_CDS: 2.07 Total: 2.12 kcal Total: -37.32 0.04 -37.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16624780_4974312.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.163 kcal (2) G-P(sol) polarization free energy of solvation -37.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds