Wall clock time and date at job start Sun Mar 7 2021 05:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42887 * 1 3 3 Si 1.86296 * 109.47318 * 2 1 4 4 C 1.50706 * 109.47389 * 239.99834 * 2 1 3 5 5 C 1.35457 * 125.55936 * 120.02348 * 4 2 1 6 6 C 1.39842 * 107.86135 * 179.97438 * 5 4 2 7 7 C 1.37867 * 107.08424 * 0.02562 * 6 5 4 8 8 C 1.46675 * 126.23067 * 179.97438 * 7 6 5 9 9 O 1.21688 * 120.00491 * 0.02797 * 8 7 6 10 10 N 1.34782 * 120.00123 * 180.02562 * 8 7 6 11 11 C 1.46494 * 120.00446 * 180.02562 * 10 8 7 12 12 H 1.09009 * 109.46916 * 35.00235 * 11 10 8 13 13 C 1.52999 * 109.47504 * 154.99881 * 11 10 8 14 14 C 1.52999 * 109.47201 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.46900 * 299.99898 * 14 13 11 16 16 H 1.08994 * 109.47355 * 299.99897 * 15 14 13 17 17 C 1.50703 * 109.46915 * 180.02562 * 15 14 13 18 18 N 1.30523 * 126.34815 * 94.97594 * 17 15 14 19 19 N 1.28592 * 109.67062 * 180.02562 * 18 17 15 20 20 C 1.30524 * 109.67571 * 359.97438 * 19 18 17 21 21 N 1.35485 * 107.30675 * 359.97438 * 20 19 18 22 22 C 1.52996 * 109.47298 * 60.00355 * 15 14 13 23 23 C 1.52995 * 109.47537 * 275.00372 * 11 10 8 24 24 N 1.35532 * 125.56733 * 300.25778 * 4 2 1 25 25 H 0.96703 * 114.00261 * 299.99748 * 1 2 3 26 26 H 1.09003 * 109.47150 * 120.00520 * 2 1 3 27 27 H 1.48496 * 110.00198 * 300.00010 * 3 2 1 28 28 H 1.48510 * 109.99753 * 61.31955 * 3 2 1 29 29 H 1.08000 * 126.07186 * 359.97438 * 5 4 2 30 30 H 1.07991 * 126.45341 * 180.02562 * 6 5 4 31 31 H 0.97003 * 119.99779 * 359.97438 * 10 8 7 32 32 H 1.08996 * 109.46872 * 59.99933 * 13 11 10 33 33 H 1.09005 * 109.47243 * 300.00348 * 13 11 10 34 34 H 1.09001 * 109.46804 * 180.02562 * 14 13 11 35 35 H 1.08996 * 109.47538 * 60.00003 * 14 13 11 36 36 H 1.07998 * 126.34400 * 180.02562 * 20 19 18 37 37 H 0.96996 * 126.98075 * 179.97438 * 21 20 19 38 38 H 1.09006 * 109.47165 * 59.99187 * 22 15 14 39 39 H 1.08996 * 109.47299 * 179.97438 * 22 15 14 40 40 H 1.09009 * 109.46905 * 299.99869 * 23 11 10 41 41 H 1.08998 * 109.47072 * 59.98986 * 23 11 10 42 42 H 0.97001 * 125.67432 * 0.05652 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2305 5 6 2.7137 -0.1636 -2.1915 6 6 2.9578 -1.1461 -3.1563 7 6 2.3024 -2.2877 -2.7467 8 6 2.2787 -3.5739 -3.4514 9 8 2.8780 -3.7029 -4.5026 10 7 1.5933 -4.6130 -2.9346 11 6 1.5701 -5.8977 -3.6381 12 1 2.5319 -6.0636 -4.1234 13 6 1.3036 -7.0231 -2.6363 14 6 1.2800 -8.3649 -3.3710 15 6 0.1725 -8.3489 -4.4266 16 1 -0.7894 -8.1833 -3.9416 17 6 0.1489 -9.6709 -5.1498 18 7 -0.6106 -10.6940 -4.8669 19 7 -0.3672 -11.6538 -5.6873 20 6 0.5582 -11.2864 -6.5314 21 7 0.9115 -10.0173 -6.2149 22 6 0.4390 -7.2237 -5.4284 23 6 0.4625 -5.8815 -4.6934 24 7 1.6704 -1.9994 -1.5583 25 1 -0.3934 0.4417 0.7651 26 1 1.7922 -0.5139 0.8900 27 1 1.5615 2.4679 -1.2084 28 1 1.5878 2.4585 1.2243 29 1 3.0835 0.8509 -2.2095 30 1 3.5484 -1.0319 -4.0532 31 1 1.1159 -4.5103 -2.0964 32 1 0.3418 -6.8572 -2.1510 33 1 2.0927 -7.0347 -1.8845 34 1 1.0897 -9.1665 -2.6573 35 1 2.2419 -8.5306 -3.8561 36 1 0.9660 -11.8832 -7.3338 37 1 1.5763 -9.4686 -6.6596 38 1 1.4011 -7.3893 -5.9134 39 1 -0.3497 -7.2126 -6.1806 40 1 -0.4994 -5.7156 -4.2080 41 1 0.6523 -5.0798 -5.4070 42 1 1.1294 -2.6163 -1.0410 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16624780_6580494.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:37:22 Heat of formation + Delta-G solvation = 47.609762 kcal Electronic energy + Delta-G solvation = -25974.065992 eV Core-core repulsion = 22150.244532 eV Total energy + Delta-G solvation = -3823.821460 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.12628 -42.51106 -40.84849 -39.19447 -37.94034 -35.82287 -34.59168 -32.80560 -32.10242 -32.01579 -31.45217 -29.64478 -26.91100 -24.85499 -24.24749 -23.51307 -22.85208 -22.10821 -21.49341 -21.39652 -20.91024 -19.56763 -19.36600 -18.76998 -17.50257 -17.01607 -16.79539 -16.46398 -16.40731 -16.10612 -15.97071 -15.42353 -15.29957 -15.05877 -14.85092 -14.63761 -14.34305 -14.11480 -13.85792 -13.76244 -13.55717 -13.48214 -12.88724 -12.79520 -12.54040 -12.46050 -12.34775 -12.03955 -11.87397 -11.81523 -11.62451 -11.33283 -11.12139 -10.79315 -10.26740 -10.18073 -10.06506 -9.24481 -5.02548 0.34652 0.81156 1.06842 1.51012 1.55460 1.76326 1.85024 1.92251 1.93334 2.10068 2.37176 3.05449 3.06301 3.33810 3.44938 3.63798 3.66660 3.74333 3.80773 3.92366 3.99166 4.04132 4.11263 4.15498 4.18801 4.27375 4.32681 4.40254 4.44953 4.48101 4.59252 4.77864 4.81341 4.86895 4.88145 4.99161 5.03355 5.08709 5.11280 5.12774 5.30264 5.61891 5.82521 6.03471 6.15721 6.21144 6.39030 7.08208 7.75738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.062 4.062 3 Si 0.713 3.287 4 C 0.070 3.930 5 C -0.197 4.197 6 C -0.096 4.096 7 C -0.053 4.053 8 C 0.593 3.407 9 O -0.524 6.524 10 N -0.730 5.730 11 C 0.145 3.855 12 H 0.093 0.907 13 C -0.126 4.126 14 C -0.106 4.106 15 C -0.003 4.003 16 H 0.110 0.890 17 C 0.186 3.814 18 N -0.291 5.291 19 N -0.296 5.296 20 C 0.154 3.846 21 N -0.581 5.581 22 C -0.114 4.114 23 C -0.128 4.128 24 N -0.524 5.524 25 H 0.385 0.615 26 H 0.078 0.922 27 H -0.250 1.250 28 H -0.259 1.259 29 H 0.152 0.848 30 H 0.154 0.846 31 H 0.395 0.605 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.223 0.777 37 H 0.429 0.571 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.455 3.288 3.299 5.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.350 6.350 2 C -0.171 4.171 3 Si 0.612 3.388 4 C -0.048 4.048 5 C -0.222 4.222 6 C -0.123 4.123 7 C -0.166 4.166 8 C 0.381 3.619 9 O -0.399 6.399 10 N -0.380 5.380 11 C 0.041 3.959 12 H 0.111 0.889 13 C -0.164 4.164 14 C -0.145 4.145 15 C -0.024 4.024 16 H 0.128 0.872 17 C -0.083 4.083 18 N -0.132 5.132 19 N -0.135 5.135 20 C -0.135 4.135 21 N -0.194 5.194 22 C -0.153 4.153 23 C -0.167 4.167 24 N -0.120 5.120 25 H 0.234 0.766 26 H 0.096 0.904 27 H -0.174 1.174 28 H -0.184 1.184 29 H 0.169 0.831 30 H 0.172 0.828 31 H 0.228 0.772 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.239 0.761 37 H 0.269 0.731 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 2.517 2.574 2.783 4.550 hybrid contribution -0.336 0.437 0.209 0.590 sum 2.180 3.011 2.992 4.772 Atomic orbital electron populations 1.86563 1.17669 1.80536 1.50225 1.24606 0.84609 1.11876 0.96039 0.94336 0.91439 0.72401 0.80633 1.19867 1.02340 0.84572 0.97991 1.20657 1.05581 1.00596 0.95341 1.21310 1.00468 0.90453 1.00023 1.20416 1.08307 0.96766 0.91155 1.17038 0.78550 0.81947 0.84392 1.90863 1.44316 1.82718 1.22042 1.45952 1.53567 1.11949 1.26580 1.21054 1.00370 0.81645 0.92812 0.88878 1.21813 1.03245 0.93434 0.97914 1.21524 0.97976 0.97495 0.97525 1.19783 1.02201 0.85645 0.94804 0.87213 1.24849 0.93527 0.99400 0.90565 1.74304 1.21025 0.97273 1.20561 1.74306 1.13744 1.21947 1.03538 1.26590 0.98794 0.84934 1.03160 1.44134 1.33710 1.14775 1.26736 1.21606 1.02484 0.93555 0.97675 1.21912 0.99171 0.97250 0.98342 1.41897 1.39851 1.11290 1.18983 0.76620 0.90377 1.17374 1.18430 0.83051 0.82843 0.77188 0.90664 0.90440 0.90105 0.91354 0.76086 0.73098 0.91581 0.90648 0.91055 0.90491 0.74685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.50 12.86 -35.23 -0.45 0.05 16 2 C -0.06 0.12 3.07 36.01 0.11 0.23 16 3 Si 0.71 -1.74 30.54 -169.99 -5.19 -6.93 16 4 C 0.07 -0.01 6.51 -81.95 -0.53 -0.54 16 5 C -0.20 -0.07 9.32 -39.97 -0.37 -0.44 16 6 C -0.10 -0.16 10.65 -39.12 -0.42 -0.57 16 7 C -0.05 -0.07 7.06 -81.98 -0.58 -0.64 16 8 C 0.59 1.04 7.75 -12.85 -0.10 0.94 16 9 O -0.52 -2.73 16.54 5.20 0.09 -2.65 16 10 N -0.73 1.16 5.07 -55.12 -0.28 0.88 16 11 C 0.15 -0.29 2.45 -67.94 -0.17 -0.46 16 12 H 0.09 -0.04 7.58 -51.92 -0.39 -0.43 16 13 C -0.13 0.45 5.39 -26.73 -0.14 0.31 16 14 C -0.11 0.29 5.19 -26.73 -0.14 0.15 16 15 C 0.00 0.01 2.66 -91.77 -0.24 -0.24 16 16 H 0.11 -0.18 8.14 -51.93 -0.42 -0.60 16 17 C 0.19 0.14 6.99 -154.98 -1.08 -0.94 16 18 N -0.29 -1.41 12.21 32.80 0.40 -1.01 16 19 N -0.30 -1.40 12.21 29.69 0.36 -1.04 16 20 C 0.15 0.00 13.19 -89.95 -1.19 -1.19 16 21 N -0.58 0.92 5.96 -11.36 -0.07 0.85 16 22 C -0.11 0.31 4.97 -26.71 -0.13 0.18 16 23 C -0.13 0.25 5.50 -26.71 -0.15 0.10 16 24 N -0.52 0.38 5.99 -5.69 -0.03 0.35 16 25 H 0.39 -1.84 8.74 45.56 0.40 -1.44 16 26 H 0.08 -0.31 7.96 -51.93 -0.41 -0.72 16 27 H -0.25 -0.26 7.11 56.52 0.40 0.14 16 28 H -0.26 0.15 7.11 56.52 0.40 0.55 16 29 H 0.15 -0.26 6.17 -52.49 -0.32 -0.58 16 30 H 0.15 0.17 8.06 -52.49 -0.42 -0.25 16 31 H 0.39 -1.58 7.73 -40.82 -0.32 -1.90 16 32 H 0.07 -0.32 8.14 -51.93 -0.42 -0.74 16 33 H 0.08 -0.28 8.14 -51.93 -0.42 -0.71 16 34 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 35 H 0.07 -0.20 8.14 -51.93 -0.42 -0.62 16 36 H 0.22 -0.96 8.06 -52.49 -0.42 -1.38 16 37 H 0.43 -2.10 8.29 -40.82 -0.34 -2.44 16 38 H 0.07 -0.23 7.52 -51.93 -0.39 -0.62 16 39 H 0.07 -0.17 8.14 -51.93 -0.42 -0.59 16 40 H 0.07 -0.16 8.14 -51.92 -0.42 -0.58 16 41 H 0.08 0.01 8.14 -51.93 -0.42 -0.41 16 42 H 0.42 -1.35 8.19 -40.82 -0.33 -1.68 16 LS Contribution 349.72 15.07 5.27 5.27 Total: 0.00 -12.35 349.72 -10.57 -22.93 By element: Atomic # 1 Polarization: -10.05 SS G_CDS: -5.54 Total: -15.59 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -5.13 Total: -3.11 kcal Atomic # 7 Polarization: -0.35 SS G_CDS: 0.38 Total: 0.03 kcal Atomic # 8 Polarization: -2.23 SS G_CDS: -0.37 Total: -2.60 kcal Atomic # 14 Polarization: -1.74 SS G_CDS: -5.19 Total: -6.93 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -12.35 -10.57 -22.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16624780_6580494.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.537 kcal (2) G-P(sol) polarization free energy of solvation -12.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds