Wall clock time and date at job start Sun Mar 7 2021 05:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42887 * 1 3 3 Si 1.86296 * 109.47318 * 2 1 4 4 C 1.50706 * 109.47389 * 239.99834 * 2 1 3 5 5 C 1.35457 * 125.55936 * 120.02348 * 4 2 1 6 6 C 1.39842 * 107.86135 * 179.97438 * 5 4 2 7 7 C 1.37867 * 107.08424 * 0.02562 * 6 5 4 8 8 C 1.46675 * 126.23067 * 179.97438 * 7 6 5 9 9 O 1.21688 * 120.00491 * 0.02797 * 8 7 6 10 10 N 1.34782 * 120.00123 * 180.02562 * 8 7 6 11 11 C 1.46494 * 120.00446 * 180.02562 * 10 8 7 12 12 H 1.09009 * 109.46916 * 35.00235 * 11 10 8 13 13 C 1.52999 * 109.47504 * 154.99881 * 11 10 8 14 14 C 1.52999 * 109.47201 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.46900 * 299.99898 * 14 13 11 16 16 H 1.08994 * 109.47355 * 299.99897 * 15 14 13 17 17 C 1.50703 * 109.46915 * 180.02562 * 15 14 13 18 18 N 1.30523 * 126.34815 * 94.97594 * 17 15 14 19 19 N 1.28592 * 109.67062 * 180.02562 * 18 17 15 20 20 C 1.30524 * 109.67571 * 359.97438 * 19 18 17 21 21 N 1.35485 * 107.30675 * 359.97438 * 20 19 18 22 22 C 1.52996 * 109.47298 * 60.00355 * 15 14 13 23 23 C 1.52995 * 109.47537 * 275.00372 * 11 10 8 24 24 N 1.35532 * 125.56733 * 300.25778 * 4 2 1 25 25 H 0.96703 * 114.00261 * 299.99748 * 1 2 3 26 26 H 1.09003 * 109.47150 * 120.00520 * 2 1 3 27 27 H 1.48496 * 110.00198 * 300.00010 * 3 2 1 28 28 H 1.48510 * 109.99753 * 61.31955 * 3 2 1 29 29 H 1.08000 * 126.07186 * 359.97438 * 5 4 2 30 30 H 1.07991 * 126.45341 * 180.02562 * 6 5 4 31 31 H 0.97003 * 119.99779 * 359.97438 * 10 8 7 32 32 H 1.08996 * 109.46872 * 59.99933 * 13 11 10 33 33 H 1.09005 * 109.47243 * 300.00348 * 13 11 10 34 34 H 1.09001 * 109.46804 * 180.02562 * 14 13 11 35 35 H 1.08996 * 109.47538 * 60.00003 * 14 13 11 36 36 H 1.07998 * 126.34400 * 180.02562 * 20 19 18 37 37 H 0.96996 * 126.98075 * 179.97438 * 21 20 19 38 38 H 1.09006 * 109.47165 * 59.99187 * 22 15 14 39 39 H 1.08996 * 109.47299 * 179.97438 * 22 15 14 40 40 H 1.09009 * 109.46905 * 299.99869 * 23 11 10 41 41 H 1.08998 * 109.47072 * 59.98986 * 23 11 10 42 42 H 0.97001 * 125.67432 * 0.05652 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2305 5 6 2.7137 -0.1636 -2.1915 6 6 2.9578 -1.1461 -3.1563 7 6 2.3024 -2.2877 -2.7467 8 6 2.2787 -3.5739 -3.4514 9 8 2.8780 -3.7029 -4.5026 10 7 1.5933 -4.6130 -2.9346 11 6 1.5701 -5.8977 -3.6381 12 1 2.5319 -6.0636 -4.1234 13 6 1.3036 -7.0231 -2.6363 14 6 1.2800 -8.3649 -3.3710 15 6 0.1725 -8.3489 -4.4266 16 1 -0.7894 -8.1833 -3.9416 17 6 0.1489 -9.6709 -5.1498 18 7 -0.6106 -10.6940 -4.8669 19 7 -0.3672 -11.6538 -5.6873 20 6 0.5582 -11.2864 -6.5314 21 7 0.9115 -10.0173 -6.2149 22 6 0.4390 -7.2237 -5.4284 23 6 0.4625 -5.8815 -4.6934 24 7 1.6704 -1.9994 -1.5583 25 1 -0.3934 0.4417 0.7651 26 1 1.7922 -0.5139 0.8900 27 1 1.5615 2.4679 -1.2084 28 1 1.5878 2.4585 1.2243 29 1 3.0835 0.8509 -2.2095 30 1 3.5484 -1.0319 -4.0532 31 1 1.1159 -4.5103 -2.0964 32 1 0.3418 -6.8572 -2.1510 33 1 2.0927 -7.0347 -1.8845 34 1 1.0897 -9.1665 -2.6573 35 1 2.2419 -8.5306 -3.8561 36 1 0.9660 -11.8832 -7.3338 37 1 1.5763 -9.4686 -6.6596 38 1 1.4011 -7.3893 -5.9134 39 1 -0.3497 -7.2126 -6.1806 40 1 -0.4994 -5.7156 -4.2080 41 1 0.6523 -5.0798 -5.4070 42 1 1.1294 -2.6163 -1.0410 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16624780_6580494.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:37:21 Heat of formation + Delta-G solvation = 43.515872 kcal Electronic energy + Delta-G solvation = -25974.243517 eV Core-core repulsion = 22150.244532 eV Total energy + Delta-G solvation = -3823.998985 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.16493 -42.50839 -40.82376 -39.18934 -37.80845 -35.84378 -34.61306 -32.80007 -32.03351 -31.91195 -31.43170 -29.62718 -26.85297 -24.80350 -24.14285 -23.44682 -22.87574 -22.07883 -21.45540 -21.36102 -20.85745 -19.53132 -19.30689 -18.61520 -17.45122 -17.01148 -16.82109 -16.44736 -16.39938 -15.99673 -15.92787 -15.29760 -15.24263 -15.00571 -14.80805 -14.61251 -14.24338 -14.05915 -13.82026 -13.69448 -13.52534 -13.32207 -12.88118 -12.72850 -12.46122 -12.32793 -12.23849 -12.02509 -11.85528 -11.71645 -11.54851 -11.39374 -11.19115 -10.64513 -10.29778 -10.22846 -10.06599 -9.25110 -4.83824 0.30183 0.84163 1.21778 1.55262 1.65785 1.83140 1.86860 1.93749 2.01093 2.19263 2.28514 3.14166 3.25616 3.49012 3.62185 3.77482 3.81618 3.82576 3.96663 4.08988 4.17549 4.22464 4.27980 4.28595 4.30355 4.36918 4.41267 4.46237 4.50349 4.60666 4.75447 4.95340 4.96387 4.98139 5.01462 5.03681 5.11164 5.13340 5.22359 5.24347 5.39303 5.61537 5.79605 6.22111 6.28435 6.45929 6.53484 7.04365 7.68886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.561 6.561 2 C -0.065 4.065 3 Si 0.787 3.213 4 C 0.068 3.932 5 C -0.209 4.209 6 C -0.118 4.118 7 C -0.065 4.065 8 C 0.592 3.408 9 O -0.566 6.566 10 N -0.714 5.714 11 C 0.147 3.853 12 H 0.078 0.922 13 C -0.116 4.116 14 C -0.101 4.101 15 C 0.003 3.997 16 H 0.107 0.893 17 C 0.192 3.808 18 N -0.343 5.343 19 N -0.354 5.354 20 C 0.169 3.831 21 N -0.569 5.569 22 C -0.107 4.107 23 C -0.123 4.123 24 N -0.513 5.513 25 H 0.401 0.599 26 H 0.107 0.893 27 H -0.302 1.302 28 H -0.281 1.281 29 H 0.165 0.835 30 H 0.148 0.852 31 H 0.409 0.591 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.262 0.738 37 H 0.445 0.555 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.056 0.944 42 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.783 3.343 4.290 6.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.372 6.372 2 C -0.173 4.173 3 Si 0.690 3.310 4 C -0.051 4.051 5 C -0.233 4.233 6 C -0.145 4.145 7 C -0.178 4.178 8 C 0.380 3.620 9 O -0.445 6.445 10 N -0.365 5.365 11 C 0.042 3.958 12 H 0.097 0.903 13 C -0.154 4.154 14 C -0.140 4.140 15 C -0.018 4.018 16 H 0.125 0.875 17 C -0.079 4.079 18 N -0.182 5.182 19 N -0.193 5.193 20 C -0.121 4.121 21 N -0.183 5.183 22 C -0.145 4.145 23 C -0.162 4.162 24 N -0.110 5.110 25 H 0.253 0.747 26 H 0.125 0.875 27 H -0.229 1.229 28 H -0.207 1.207 29 H 0.183 0.817 30 H 0.166 0.834 31 H 0.245 0.755 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.277 0.723 37 H 0.289 0.711 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.075 0.925 42 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 2.826 2.602 3.831 5.425 hybrid contribution -0.454 0.483 -0.129 0.675 sum 2.372 3.085 3.701 5.370 Atomic orbital electron populations 1.86516 1.18106 1.80983 1.51617 1.24725 0.84360 1.12032 0.96202 0.93458 0.90322 0.70634 0.76568 1.20210 1.01814 0.84709 0.98393 1.20894 1.05996 1.01114 0.95272 1.21473 1.01123 0.91366 1.00501 1.20346 1.08967 0.96539 0.91979 1.17150 0.78335 0.82601 0.83910 1.90834 1.46352 1.83455 1.23890 1.45838 1.52468 1.11354 1.26801 1.21070 0.99640 0.81822 0.93222 0.90341 1.21741 1.04233 0.92023 0.97385 1.21472 0.97730 0.97678 0.97138 1.19816 1.02479 0.84586 0.94925 0.87468 1.25179 0.92745 0.99311 0.90707 1.74185 1.23275 0.98596 1.22184 1.74191 1.16445 1.23265 1.05402 1.27299 0.97009 0.85303 1.02492 1.44094 1.33576 1.14580 1.26080 1.21535 1.02975 0.92708 0.97323 1.21837 0.99435 0.96921 0.97972 1.41851 1.39388 1.11424 1.18328 0.74725 0.87502 1.22903 1.20727 0.81740 0.83403 0.75540 0.89369 0.89700 0.90802 0.90969 0.72275 0.71125 0.90558 0.90890 0.90393 0.92547 0.73240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.76 12.86 -148.98 -1.92 -0.15 16 2 C -0.06 0.35 3.07 71.24 0.22 0.57 16 3 Si 0.79 -4.16 30.54 68.60 2.10 -2.06 16 4 C 0.07 -0.06 6.51 41.35 0.27 0.21 16 5 C -0.21 -0.21 9.32 22.01 0.21 -0.01 16 6 C -0.12 -0.52 10.65 22.57 0.24 -0.28 16 7 C -0.06 -0.20 7.06 40.35 0.28 0.09 16 8 C 0.59 2.54 7.75 86.45 0.67 3.21 16 9 O -0.57 -6.86 16.54 -4.31 -0.07 -6.93 16 10 N -0.71 2.40 5.07 -446.51 -2.27 0.14 16 11 C 0.15 -0.61 2.45 44.99 0.11 -0.50 16 12 H 0.08 -0.04 7.58 -2.38 -0.02 -0.05 16 13 C -0.12 0.94 5.39 30.59 0.16 1.11 16 14 C -0.10 0.60 5.19 30.59 0.16 0.76 16 15 C 0.00 -0.01 2.66 -11.54 -0.03 -0.04 16 16 H 0.11 -0.34 8.14 -2.39 -0.02 -0.36 16 17 C 0.19 0.33 6.99 137.98 0.96 1.30 16 18 N -0.34 -3.72 12.21 -50.15 -0.61 -4.33 16 19 N -0.35 -3.70 12.21 -59.99 -0.73 -4.43 16 20 C 0.17 -0.08 13.19 180.11 2.37 2.30 16 21 N -0.57 2.12 5.96 -189.86 -1.13 0.99 16 22 C -0.11 0.60 4.97 30.61 0.15 0.75 16 23 C -0.12 0.46 5.50 30.61 0.17 0.63 16 24 N -0.51 1.04 5.99 -171.93 -1.03 0.01 16 25 H 0.40 -4.40 8.74 -74.06 -0.65 -5.05 16 26 H 0.11 -1.14 7.96 -2.39 -0.02 -1.15 16 27 H -0.30 -1.03 7.11 99.48 0.71 -0.32 16 28 H -0.28 0.48 7.11 99.48 0.71 1.18 16 29 H 0.17 -0.49 6.17 -2.91 -0.02 -0.51 16 30 H 0.15 0.67 8.06 -2.92 -0.02 0.64 16 31 H 0.41 -3.70 7.73 -92.71 -0.72 -4.42 16 32 H 0.09 -0.90 8.14 -2.39 -0.02 -0.92 16 33 H 0.08 -0.75 8.14 -2.38 -0.02 -0.77 16 34 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 35 H 0.07 -0.47 8.14 -2.39 -0.02 -0.49 16 36 H 0.26 -2.70 8.06 -2.91 -0.02 -2.72 16 37 H 0.45 -4.89 8.29 -92.71 -0.77 -5.66 16 38 H 0.08 -0.58 7.52 -2.38 -0.02 -0.59 16 39 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 40 H 0.08 -0.39 8.14 -2.38 -0.02 -0.41 16 41 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 42 H 0.43 -3.31 8.19 -92.71 -0.76 -4.07 16 Total: 0.00 -31.47 349.72 -1.47 -32.93 By element: Atomic # 1 Polarization: -24.51 SS G_CDS: -1.75 Total: -26.26 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: 5.95 Total: 10.10 kcal Atomic # 7 Polarization: -1.85 SS G_CDS: -5.77 Total: -7.63 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: -1.99 Total: -7.08 kcal Atomic # 14 Polarization: -4.16 SS G_CDS: 2.10 Total: -2.06 kcal Total: -31.47 -1.47 -32.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16624780_6580494.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.447 kcal (2) G-P(sol) polarization free energy of solvation -31.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds