Wall clock time and date at job start Sun Mar 7 2021 05:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33811 * 122.45335 * 2 1 4 4 C 1.50705 * 124.52155 * 359.97383 * 3 2 1 5 5 O 1.42903 * 109.46876 * 30.00285 * 4 3 2 6 6 Si 1.86300 * 109.47215 * 149.99894 * 4 3 2 7 7 S 1.70616 * 110.96052 * 179.73568 * 3 2 1 8 8 C 1.75840 * 91.55896 * 0.30784 * 7 3 2 9 9 C 1.46582 * 125.45354 * 179.97438 * 8 7 3 10 10 O 1.21706 * 119.99398 * 179.69367 * 9 8 7 11 11 N 1.34770 * 120.00338 * 359.68585 * 9 8 7 12 12 C 1.46500 * 120.00256 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.46845 * 325.00694 * 12 11 9 14 14 C 1.53006 * 109.47249 * 84.99846 * 12 11 9 15 15 C 1.52997 * 109.47164 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.46978 * 299.99874 * 15 14 12 17 17 H 1.08992 * 109.47056 * 300.00064 * 16 15 14 18 18 C 1.50701 * 109.46958 * 180.02562 * 16 15 14 19 19 N 1.30521 * 126.34592 * 144.69130 * 18 16 15 20 20 N 1.28593 * 109.67203 * 179.82774 * 19 18 16 21 21 C 1.30523 * 109.67317 * 0.44319 * 20 19 18 22 22 N 1.35490 * 107.30631 * 359.73292 * 21 20 19 23 23 C 1.52996 * 109.46891 * 60.00410 * 16 15 14 24 24 C 1.52997 * 109.47473 * 205.00145 * 12 11 9 25 25 C 1.36644 * 109.08210 * 359.69198 * 8 7 3 26 26 H 1.08998 * 109.47234 * 269.99900 * 1 2 3 27 27 H 1.08998 * 109.46854 * 30.00293 * 1 2 3 28 28 H 1.09001 * 109.46563 * 150.00064 * 1 2 3 29 29 H 1.09000 * 109.47321 * 270.00705 * 4 3 2 30 30 H 0.96693 * 114.00105 * 180.02562 * 5 4 3 31 31 H 1.48506 * 109.99873 * 178.68155 * 6 4 3 32 32 H 1.48492 * 110.00371 * 300.00322 * 6 4 3 33 33 H 0.97005 * 120.00370 * 0.02562 * 11 9 8 34 34 H 1.09001 * 109.47002 * 60.00085 * 14 12 11 35 35 H 1.09000 * 109.47050 * 300.00351 * 14 12 11 36 36 H 1.09002 * 109.47045 * 180.02562 * 15 14 12 37 37 H 1.09001 * 109.47375 * 59.99966 * 15 14 12 38 38 H 1.07997 * 126.34438 * 179.73054 * 21 20 19 39 39 H 0.96997 * 126.97787 * 179.97438 * 22 21 20 40 40 H 1.09004 * 109.47368 * 179.97438 * 23 16 15 41 41 H 1.09001 * 109.47372 * 59.99964 * 23 16 15 42 42 H 1.09002 * 109.47153 * 59.99757 * 24 12 11 43 43 H 1.09001 * 109.46832 * 299.99948 * 24 12 11 44 44 H 1.08002 * 123.34969 * 180.20518 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2251 1.1291 0.0000 4 6 1.6356 2.5161 -0.0006 5 8 0.3752 2.4983 0.6727 6 14 2.7923 3.6829 0.8778 7 16 3.8970 0.7892 0.0074 8 6 3.5937 -0.9428 0.0010 9 6 4.6232 -1.9863 0.0027 10 8 4.3001 -3.1597 0.0035 11 7 5.9273 -1.6464 0.0032 12 6 6.9562 -2.6893 0.0042 13 1 6.6117 -3.5388 0.5939 14 6 7.2256 -3.1415 -1.4324 15 6 8.2996 -4.2311 -1.4312 16 6 9.5883 -3.6762 -0.8211 17 1 9.9331 -2.8268 -1.4107 18 6 10.6465 -4.7492 -0.8204 19 7 11.9262 -4.5738 -1.0080 20 7 12.5330 -5.7054 -0.9380 21 6 11.6669 -6.6553 -0.7119 22 7 10.4449 -6.0756 -0.6308 23 6 9.3189 -3.2241 0.6155 24 6 8.2447 -2.1339 0.6142 25 6 2.2446 -1.1601 0.0007 26 1 -0.3633 0.0000 1.0276 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3632 -0.8900 -0.5138 29 1 1.4938 2.8502 -1.0284 30 1 -0.0629 3.3594 0.7102 31 1 2.2374 5.0602 0.8564 32 1 2.9938 3.2383 2.2802 33 1 6.1848 -0.7111 0.0028 34 1 7.5700 -2.2919 -2.0222 35 1 6.3076 -3.5371 -1.8670 36 1 8.4919 -4.5529 -2.4547 37 1 7.9549 -5.0805 -0.8415 38 1 11.8840 -7.7081 -0.6086 39 1 9.5979 -6.5200 -0.4701 40 1 10.2371 -2.8291 1.0505 41 1 8.9741 -4.0735 1.2052 42 1 8.0528 -1.8118 1.6377 43 1 8.5891 -1.2844 0.0245 44 1 1.8019 -2.1452 0.0004 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16624780_6739946.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:37:29 Heat of formation + Delta-G solvation = 32.037588 kcal Electronic energy + Delta-G solvation = -27633.224788 eV Core-core repulsion = 23679.542465 eV Total energy + Delta-G solvation = -3953.682323 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 349.125 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.13406 -41.22665 -39.93717 -39.14297 -37.49701 -35.77290 -34.57738 -32.83957 -31.94229 -31.86198 -30.21818 -29.66121 -26.57796 -24.81606 -24.23605 -23.81831 -23.21420 -22.14693 -21.68266 -20.99204 -19.97726 -19.30108 -19.13263 -18.51192 -17.59415 -17.01223 -16.83674 -16.46866 -16.39718 -16.16609 -16.03986 -15.57040 -15.17579 -15.01261 -14.81664 -14.58515 -14.50397 -14.19841 -14.03830 -13.72125 -13.27431 -13.22958 -13.13284 -12.95448 -12.82164 -12.58362 -12.40665 -12.28239 -12.18225 -12.12357 -11.98333 -11.82594 -11.66791 -11.50642 -11.34268 -11.15801 -10.80668 -10.26128 -10.18807 -9.59871 -9.34134 -5.12608 -0.64405 0.30029 0.69294 0.87189 1.06468 1.35025 1.53415 1.86146 1.89769 1.89960 2.00135 2.09066 3.18082 3.23603 3.52899 3.64156 3.67177 3.76013 3.86018 3.99447 4.13032 4.14088 4.22190 4.33084 4.33385 4.34377 4.41740 4.42055 4.45048 4.51882 4.57701 4.65381 4.79711 4.85825 4.86555 4.99660 5.02531 5.02993 5.05896 5.10181 5.17666 5.27749 5.28611 5.40237 5.44357 5.44877 6.24599 6.37289 6.54985 7.04631 7.71864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.112 4.112 3 C -0.207 4.207 4 C -0.041 4.041 5 O -0.542 6.542 6 Si 0.733 3.267 7 S 0.272 5.728 8 C -0.287 4.287 9 C 0.593 3.407 10 O -0.569 6.569 11 N -0.710 5.710 12 C 0.145 3.855 13 H 0.076 0.924 14 C -0.123 4.123 15 C -0.107 4.107 16 C 0.003 3.997 17 H 0.111 0.889 18 C 0.192 3.808 19 N -0.342 5.342 20 N -0.354 5.354 21 C 0.168 3.832 22 N -0.570 5.570 23 C -0.101 4.101 24 C -0.118 4.118 25 C -0.062 4.062 26 H 0.062 0.938 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.113 0.887 30 H 0.398 0.602 31 H -0.259 1.259 32 H -0.292 1.292 33 H 0.412 0.588 34 H 0.084 0.916 35 H 0.056 0.944 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.261 0.739 39 H 0.445 0.555 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.083 0.917 43 H 0.093 0.907 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.661 4.091 -0.943 4.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.124 4.124 3 C -0.326 4.326 4 C -0.151 4.151 5 O -0.353 6.353 6 Si 0.634 3.366 7 S 0.540 5.460 8 C -0.407 4.407 9 C 0.380 3.620 10 O -0.450 6.450 11 N -0.361 5.361 12 C 0.041 3.959 13 H 0.094 0.906 14 C -0.161 4.161 15 C -0.146 4.146 16 C -0.018 4.018 17 H 0.129 0.871 18 C -0.079 4.079 19 N -0.182 5.182 20 N -0.193 5.193 21 C -0.122 4.122 22 N -0.184 5.184 23 C -0.140 4.140 24 C -0.156 4.156 25 C -0.096 4.096 26 H 0.081 0.919 27 H 0.100 0.900 28 H 0.080 0.920 29 H 0.131 0.869 30 H 0.249 0.751 31 H -0.184 1.184 32 H -0.218 1.218 33 H 0.248 0.752 34 H 0.102 0.898 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.276 0.724 39 H 0.288 0.712 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.102 0.898 43 H 0.112 0.888 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.219 4.873 -0.498 4.903 hybrid contribution -4.058 -1.430 0.586 4.342 sum -3.839 3.443 0.088 5.157 Atomic orbital electron populations 1.20466 0.88545 1.02769 1.02271 1.18776 0.98941 0.90793 1.03877 1.23720 0.99582 0.99217 1.10083 1.24267 0.91473 0.96440 1.02953 1.86650 1.31998 1.37228 1.79395 0.94804 0.84452 0.76639 0.80694 1.82250 1.00455 0.95717 1.67535 1.24660 0.97649 0.98631 1.19748 1.17093 0.82506 0.86936 0.75460 1.90821 1.82341 1.19857 1.51937 1.45834 1.04426 1.11187 1.74638 1.21108 0.87234 0.90542 0.97006 0.90594 1.21835 0.98455 0.99379 0.96459 1.21532 0.92722 0.98585 1.01723 1.19834 0.89525 0.93248 0.99214 0.87112 1.25210 0.95349 0.85599 1.01707 1.74185 1.03979 1.19176 1.20835 1.74191 1.28846 0.96051 1.20189 1.27282 0.80439 1.02916 1.01587 1.44102 1.12136 1.07686 1.54472 1.21477 0.99297 0.99128 0.94122 1.21773 0.92178 0.98943 1.02672 1.20731 0.91572 1.00037 0.97268 0.91887 0.89960 0.91970 0.86931 0.75054 1.18370 1.21847 0.75166 0.89783 0.92492 0.90749 0.90835 0.72376 0.71176 0.90739 0.91235 0.89791 0.88836 0.83850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.16 8.70 71.24 0.62 0.46 16 2 C -0.11 -0.38 5.75 -21.05 -0.12 -0.50 16 3 C -0.21 0.01 5.57 24.68 0.14 0.15 16 4 C -0.04 0.18 2.75 71.24 0.20 0.37 16 5 O -0.54 1.43 9.81 -148.98 -1.46 -0.03 16 6 Si 0.73 -3.70 31.31 68.60 2.15 -1.55 16 7 S 0.27 -1.00 19.79 -56.49 -1.12 -2.12 16 8 C -0.29 -0.87 6.45 24.08 0.16 -0.71 16 9 C 0.59 2.80 7.75 86.42 0.67 3.47 16 10 O -0.57 -7.14 16.50 -4.37 -0.07 -7.21 16 11 N -0.71 1.92 5.07 -446.59 -2.27 -0.34 16 12 C 0.15 -0.59 2.45 44.99 0.11 -0.48 16 13 H 0.08 -0.01 7.58 -2.39 -0.02 -0.03 16 14 C -0.12 0.55 5.49 30.60 0.17 0.72 16 15 C -0.11 0.66 4.97 30.59 0.15 0.81 16 16 C 0.00 -0.01 2.66 -11.54 -0.03 -0.04 16 17 H 0.11 -0.46 8.14 -2.39 -0.02 -0.48 16 18 C 0.19 0.28 6.99 137.98 0.96 1.24 16 19 N -0.34 -3.60 12.21 -50.15 -0.61 -4.21 16 20 N -0.35 -3.63 12.21 -59.99 -0.73 -4.36 16 21 C 0.17 -0.09 13.19 180.11 2.37 2.29 16 22 N -0.57 2.18 5.96 -189.86 -1.13 1.05 16 23 C -0.10 0.62 5.19 30.61 0.16 0.78 16 24 C -0.12 0.96 5.39 30.61 0.17 1.12 16 25 C -0.06 -0.32 9.80 21.72 0.21 -0.11 16 26 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 27 H 0.08 0.06 6.41 -2.39 -0.02 0.04 16 28 H 0.06 0.06 8.13 -2.39 -0.02 0.04 16 29 H 0.11 -1.01 7.96 -2.39 -0.02 -1.03 16 30 H 0.40 -4.25 8.74 -74.06 -0.65 -4.89 16 31 H -0.26 0.55 7.11 99.48 0.71 1.25 16 32 H -0.29 -0.98 7.11 99.48 0.71 -0.27 16 33 H 0.41 -3.31 7.72 -92.70 -0.72 -4.03 16 34 H 0.08 -0.54 8.14 -2.39 -0.02 -0.56 16 35 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 36 H 0.07 -0.40 8.14 -2.39 -0.02 -0.42 16 37 H 0.07 -0.56 7.52 -2.39 -0.02 -0.58 16 38 H 0.26 -2.67 8.06 -2.91 -0.02 -2.70 16 39 H 0.44 -4.87 8.29 -92.71 -0.77 -5.64 16 40 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 41 H 0.07 -0.43 8.14 -2.39 -0.02 -0.45 16 42 H 0.08 -0.71 8.14 -2.39 -0.02 -0.73 16 43 H 0.09 -1.01 8.14 -2.39 -0.02 -1.03 16 44 H 0.14 0.88 8.06 -2.91 -0.02 0.86 16 Total: 0.00 -29.65 371.91 -0.34 -29.99 By element: Atomic # 1 Polarization: -19.75 SS G_CDS: -1.03 Total: -20.78 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: 5.93 Total: 9.57 kcal Atomic # 7 Polarization: -3.12 SS G_CDS: -4.74 Total: -7.87 kcal Atomic # 8 Polarization: -5.71 SS G_CDS: -1.53 Total: -7.25 kcal Atomic # 14 Polarization: -3.70 SS G_CDS: 2.15 Total: -1.55 kcal Atomic # 16 Polarization: -1.00 SS G_CDS: -1.12 Total: -2.12 kcal Total: -29.65 -0.34 -29.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16624780_6739946.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.026 kcal (2) G-P(sol) polarization free energy of solvation -29.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds