Wall clock time and date at job start Sun Mar 7 2021 05:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86299 * 109.47078 * 2 1 4 4 C 1.50709 * 109.47074 * 240.00428 * 2 1 3 5 5 C 1.32770 * 124.71142 * 299.99737 * 4 2 1 6 6 C 1.44426 * 113.08155 * 180.02562 * 5 4 2 7 7 C 1.47191 * 123.45552 * 179.97438 * 6 5 4 8 8 O 1.21636 * 120.00572 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99582 * 180.02562 * 7 6 5 10 10 C 1.46505 * 119.99797 * 179.97438 * 9 7 6 11 11 H 1.08992 * 109.47276 * 325.00066 * 10 9 7 12 12 C 1.53002 * 109.46958 * 84.99979 * 10 9 7 13 13 C 1.52997 * 109.46978 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.47164 * 299.99874 * 13 12 10 15 15 H 1.08998 * 109.46505 * 299.99708 * 14 13 12 16 16 C 1.50697 * 109.47239 * 180.02562 * 14 13 12 17 17 N 1.30518 * 126.34932 * 145.02160 * 16 14 13 18 18 N 1.28595 * 109.67318 * 179.97438 * 17 16 14 19 19 C 1.30519 * 109.67480 * 0.02562 * 18 17 16 20 20 N 1.35485 * 107.30415 * 359.77036 * 19 18 17 21 21 C 1.52997 * 109.47127 * 59.99836 * 14 13 12 22 22 C 1.52996 * 109.46998 * 204.99519 * 10 9 7 23 23 C 1.36005 * 113.07887 * 0.24450 * 6 5 4 24 24 S 1.70443 * 110.81653 * 359.62754 * 23 6 5 25 25 H 0.96699 * 114.00055 * 59.99980 * 1 2 3 26 26 H 1.09000 * 109.47403 * 120.00512 * 2 1 3 27 27 H 1.48494 * 110.00207 * 298.68104 * 3 2 1 28 28 H 1.48502 * 109.99635 * 60.00340 * 3 2 1 29 29 H 1.08005 * 123.45610 * 0.02562 * 5 4 2 30 30 H 0.97001 * 120.00457 * 359.97438 * 9 7 6 31 31 H 1.09002 * 109.47097 * 299.99818 * 12 10 9 32 32 H 1.09001 * 109.47142 * 59.99782 * 12 10 9 33 33 H 1.09001 * 109.47375 * 59.99908 * 13 12 10 34 34 H 1.09000 * 109.47140 * 179.97438 * 13 12 10 35 35 H 1.07996 * 126.34575 * 180.02562 * 19 18 17 36 36 H 0.97007 * 126.98019 * 180.22294 * 20 19 18 37 37 H 1.09002 * 109.47153 * 180.02562 * 21 14 13 38 38 H 1.09001 * 109.46832 * 60.00321 * 21 14 13 39 39 H 1.09004 * 109.47368 * 60.00227 * 22 10 9 40 40 H 1.09001 * 109.47372 * 300.00383 * 22 10 9 41 41 H 1.07996 * 124.59013 * 179.73255 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2306 5 6 1.6689 -1.9763 -1.5329 6 6 2.2781 -2.4006 -2.7717 7 6 2.1363 -3.7581 -3.3225 8 8 1.4783 -4.5903 -2.7275 9 7 2.7363 -4.0794 -4.4858 10 6 2.5955 -5.4308 -5.0338 11 1 2.5624 -6.1523 -4.2175 12 6 1.3018 -5.5197 -5.8458 13 6 1.1545 -6.9311 -6.4176 14 6 2.3477 -7.2414 -7.3237 15 1 2.3809 -6.5202 -8.1403 16 6 2.2023 -8.6314 -7.8874 17 7 2.5689 -9.0264 -9.0762 18 7 2.2957 -10.2746 -9.2210 19 6 1.7419 -10.7325 -8.1314 20 7 1.6713 -9.7041 -7.2523 21 6 3.6414 -7.1525 -6.5118 22 6 3.7887 -5.7404 -5.9401 23 6 3.0012 -1.4186 -3.3740 24 16 2.9451 0.0206 -2.4627 25 1 -0.3933 0.4417 -0.7650 26 1 1.7924 -0.5139 0.8899 27 1 1.5879 2.4586 -1.2242 28 1 1.5615 2.4678 1.2086 29 1 1.0621 -2.6223 -0.9158 30 1 3.2613 -3.4159 -4.9603 31 1 0.4517 -5.2991 -5.2002 32 1 1.3349 -4.7981 -6.6622 33 1 1.1212 -7.6523 -5.6010 34 1 0.2326 -6.9946 -6.9957 35 1 1.4064 -11.7448 -7.9607 36 1 1.3118 -9.7299 -6.3517 37 1 4.4915 -7.3731 -7.1574 38 1 3.6081 -7.8737 -5.6952 39 1 4.7104 -5.6771 -5.3617 40 1 3.8218 -5.0188 -6.7565 41 1 3.5368 -1.5346 -4.3046 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16624780_6894386.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:37:33 Heat of formation + Delta-G solvation = 31.677848 kcal Electronic energy + Delta-G solvation = -25618.805336 eV Core-core repulsion = 21820.645033 eV Total energy + Delta-G solvation = -3798.160303 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.15704 -41.28465 -39.58800 -38.74113 -37.17029 -35.77902 -34.59350 -32.72514 -31.88978 -31.57344 -29.56149 -26.96370 -25.94842 -24.45022 -23.95313 -23.27226 -22.25443 -21.82767 -21.14918 -20.30856 -19.31066 -19.00726 -18.07779 -17.84048 -17.06316 -16.86020 -16.44497 -16.37775 -16.24466 -15.90706 -15.60563 -15.21008 -15.17572 -14.85217 -14.52914 -14.08124 -14.05485 -13.81849 -13.62205 -13.47360 -13.28802 -12.86245 -12.64303 -12.43902 -12.40526 -12.29074 -12.21218 -11.84828 -11.83895 -11.68064 -11.52516 -11.30926 -11.00187 -10.76008 -10.26965 -10.18222 -9.95797 -9.43158 -5.05013 -0.31712 0.41021 0.71744 0.83397 0.84960 1.23186 1.56290 1.83918 1.88350 1.90915 2.09386 2.28390 3.15713 3.30353 3.51471 3.61055 3.65241 3.84075 3.91021 3.97876 4.01118 4.12229 4.20058 4.29375 4.31698 4.32729 4.39082 4.42847 4.49992 4.51141 4.64222 4.73325 4.78281 4.98488 4.99563 5.02916 5.03619 5.06705 5.15319 5.17832 5.25931 5.29327 5.47650 6.22196 6.40028 6.49072 7.17169 7.69610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.046 4.046 3 Si 0.730 3.270 4 C -0.247 4.247 5 C -0.076 4.076 6 C -0.183 4.183 7 C 0.576 3.424 8 O -0.582 6.582 9 N -0.707 5.707 10 C 0.146 3.854 11 H 0.072 0.928 12 C -0.122 4.122 13 C -0.107 4.107 14 C 0.003 3.997 15 H 0.110 0.890 16 C 0.191 3.809 17 N -0.342 5.342 18 N -0.354 5.354 19 C 0.169 3.831 20 N -0.570 5.570 21 C -0.102 4.102 22 C -0.115 4.115 23 C -0.189 4.189 24 S 0.248 5.752 25 H 0.388 0.612 26 H 0.130 0.870 27 H -0.252 1.252 28 H -0.277 1.277 29 H 0.131 0.869 30 H 0.415 0.585 31 H 0.053 0.947 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.261 0.739 36 H 0.445 0.555 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.810 4.371 1.537 5.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.157 4.157 3 Si 0.630 3.370 4 C -0.364 4.364 5 C -0.106 4.106 6 C -0.201 4.201 7 C 0.363 3.637 8 O -0.463 6.463 9 N -0.359 5.359 10 C 0.042 3.958 11 H 0.090 0.910 12 C -0.161 4.161 13 C -0.146 4.146 14 C -0.017 4.017 15 H 0.128 0.872 16 C -0.080 4.080 17 N -0.181 5.181 18 N -0.193 5.193 19 C -0.122 4.122 20 N -0.184 5.184 21 C -0.141 4.141 22 C -0.153 4.153 23 C -0.328 4.328 24 S 0.514 5.486 25 H 0.238 0.762 26 H 0.147 0.853 27 H -0.177 1.177 28 H -0.203 1.203 29 H 0.149 0.851 30 H 0.252 0.748 31 H 0.072 0.928 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.277 0.723 36 H 0.288 0.712 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.103 0.897 40 H 0.110 0.890 41 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 4.486 5.755 0.714 7.332 hybrid contribution -2.490 -1.917 1.239 3.378 sum 1.995 3.838 1.954 4.746 Atomic orbital electron populations 1.86610 1.18228 1.80371 1.50111 1.24717 0.83264 1.11284 0.96407 0.94466 0.90315 0.72256 0.79914 1.24822 1.08862 0.98758 1.03935 1.20980 0.99168 0.94965 0.95453 1.20120 1.06549 0.94931 0.98516 1.17876 0.78413 0.86699 0.80670 1.90788 1.42462 1.51741 1.61342 1.45779 1.52768 1.14678 1.22642 1.21033 0.95603 0.83311 0.95888 0.90980 1.21822 0.97400 0.97121 0.99721 1.21531 0.97138 0.97404 0.98531 1.19820 0.96948 0.86337 0.98636 0.87230 1.25207 0.98605 0.93492 0.90653 1.74183 1.22070 1.05531 1.16356 1.74190 1.17461 1.03864 1.23737 1.27288 1.01057 0.97534 0.86297 1.44105 1.47584 1.08770 1.17939 1.21488 0.95986 0.97488 0.99133 1.21748 0.97147 0.97030 0.99384 1.26192 1.02583 0.98103 1.05888 1.82987 1.44521 1.09921 1.11131 0.76231 0.85288 1.17695 1.20319 0.85093 0.74773 0.92840 0.89988 0.90900 0.90921 0.72334 0.71188 0.90755 0.91266 0.89708 0.88986 0.77745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.24 12.85 -148.98 -1.91 -3.16 16 2 C -0.05 0.07 2.95 71.24 0.21 0.28 16 3 Si 0.73 -3.02 30.91 68.60 2.12 -0.90 16 4 C -0.25 0.30 5.68 24.51 0.14 0.44 16 5 C -0.08 -0.26 9.91 22.67 0.22 -0.03 16 6 C -0.18 -0.14 5.98 -19.87 -0.12 -0.26 16 7 C 0.58 2.21 7.76 86.59 0.67 2.88 16 8 O -0.58 -7.56 16.46 -4.15 -0.07 -7.63 16 9 N -0.71 2.90 5.05 -446.02 -2.25 0.65 16 10 C 0.15 -0.63 2.45 44.99 0.11 -0.52 16 11 H 0.07 0.02 7.58 -2.39 -0.02 0.00 16 12 C -0.12 0.50 5.49 30.59 0.17 0.67 16 13 C -0.11 0.60 4.98 30.60 0.15 0.76 16 14 C 0.00 -0.01 2.66 -11.54 -0.03 -0.05 16 15 H 0.11 -0.42 8.14 -2.39 -0.02 -0.44 16 16 C 0.19 0.32 6.99 137.98 0.96 1.29 16 17 N -0.34 -3.65 12.21 -50.16 -0.61 -4.26 16 18 N -0.35 -3.67 12.21 -60.00 -0.73 -4.40 16 19 C 0.17 -0.06 13.19 180.12 2.38 2.31 16 20 N -0.57 2.04 5.96 -189.88 -1.13 0.91 16 21 C -0.10 0.62 5.19 30.61 0.16 0.78 16 22 C -0.12 0.99 5.39 30.61 0.17 1.15 16 23 C -0.19 1.22 10.38 67.30 0.70 1.92 16 24 S 0.25 -1.63 20.18 -56.49 -1.14 -2.77 16 25 H 0.39 -1.49 8.70 -74.06 -0.64 -2.14 16 26 H 0.13 -0.32 7.96 -2.39 -0.02 -0.33 16 27 H -0.25 0.50 7.11 99.48 0.71 1.21 16 28 H -0.28 -0.85 7.11 99.48 0.71 -0.14 16 29 H 0.13 0.99 8.06 -2.91 -0.02 0.97 16 30 H 0.41 -4.46 7.10 -92.71 -0.66 -5.12 16 31 H 0.05 0.06 8.14 -2.39 -0.02 0.04 16 32 H 0.08 -0.49 8.14 -2.39 -0.02 -0.51 16 33 H 0.07 -0.51 7.52 -2.39 -0.02 -0.53 16 34 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 35 H 0.26 -2.65 8.06 -2.91 -0.02 -2.68 16 36 H 0.44 -4.73 8.29 -92.70 -0.77 -5.50 16 37 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 38 H 0.07 -0.42 8.14 -2.39 -0.02 -0.44 16 39 H 0.08 -0.77 8.14 -2.39 -0.02 -0.79 16 40 H 0.09 -1.03 8.14 -2.39 -0.02 -1.05 16 41 H 0.21 -2.89 7.01 -2.91 -0.02 -2.91 16 Total: 0.00 -30.22 354.45 -0.78 -30.99 By element: Atomic # 1 Polarization: -20.12 SS G_CDS: -0.94 Total: -21.05 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: 5.89 Total: 11.61 kcal Atomic # 7 Polarization: -2.37 SS G_CDS: -4.73 Total: -7.10 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: -1.98 Total: -10.79 kcal Atomic # 14 Polarization: -3.02 SS G_CDS: 2.12 Total: -0.90 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -1.14 Total: -2.77 kcal Total: -30.22 -0.78 -30.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16624780_6894386.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.672 kcal (2) G-P(sol) polarization free energy of solvation -30.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds