Wall clock time and date at job start Sun Mar 7 2021 05:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37933 * 120.07547 * 2 1 4 4 C 1.38375 * 120.14911 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.85615 * 179.97438 * 4 3 2 6 6 C 1.38339 * 120.28999 * 359.95971 * 4 3 2 7 7 C 1.50699 * 119.92562 * 180.02562 * 6 4 3 8 8 O 1.42898 * 109.47398 * 284.99949 * 7 6 4 9 9 Si 1.86302 * 109.47084 * 165.00033 * 7 6 4 10 10 C 1.37976 * 120.14551 * 359.78808 * 6 4 3 11 11 C 1.39557 * 119.84862 * 0.48484 * 10 6 4 12 12 C 1.47853 * 120.14178 * 179.77250 * 11 10 6 13 13 O 1.21545 * 120.00044 * 173.71244 * 12 11 10 14 14 N 1.34779 * 119.99600 * 353.71073 * 12 11 10 15 15 C 1.46502 * 119.99615 * 180.02562 * 14 12 11 16 16 H 1.08999 * 109.47453 * 35.00061 * 15 14 12 17 17 C 1.52998 * 109.47077 * 154.99953 * 15 14 12 18 18 C 1.53005 * 109.47237 * 180.02562 * 17 15 14 19 19 C 1.52999 * 109.46816 * 300.00280 * 18 17 15 20 20 H 1.09001 * 109.47557 * 299.99590 * 19 18 17 21 21 C 1.50703 * 109.46879 * 180.02562 * 19 18 17 22 22 N 1.30520 * 126.34957 * 145.02600 * 21 19 18 23 23 N 1.28591 * 109.67512 * 179.97438 * 22 21 19 24 24 C 1.30523 * 109.67450 * 359.97438 * 23 22 21 25 25 N 1.35492 * 126.34419 * 324.70561 * 21 19 18 26 26 C 1.52998 * 109.47446 * 59.99849 * 19 18 17 27 27 C 1.52996 * 109.47337 * 299.99944 * 26 19 18 28 28 H 1.08995 * 109.47026 * 263.48014 * 1 2 3 29 29 H 1.09002 * 109.47194 * 23.48532 * 1 2 3 30 30 H 1.09008 * 109.47080 * 143.47612 * 1 2 3 31 31 H 1.08005 * 119.92524 * 359.97438 * 3 2 1 32 32 H 1.09000 * 109.46636 * 90.00435 * 5 4 3 33 33 H 1.08997 * 109.47590 * 210.00249 * 5 4 3 34 34 H 1.09003 * 109.47282 * 330.00735 * 5 4 3 35 35 H 1.09005 * 109.47177 * 44.99848 * 7 6 4 36 36 H 0.96698 * 114.00402 * 300.00393 * 8 7 6 37 37 H 1.48503 * 110.00182 * 179.97438 * 9 7 6 38 38 H 1.48494 * 109.99988 * 301.32250 * 9 7 6 39 39 H 1.08001 * 120.07442 * 180.23301 * 10 6 4 40 40 H 0.96996 * 120.00337 * 0.02562 * 14 12 11 41 41 H 1.09001 * 109.46953 * 60.00538 * 17 15 14 42 42 H 1.08998 * 109.47402 * 300.00290 * 17 15 14 43 43 H 1.09002 * 109.46938 * 180.02562 * 18 17 15 44 44 H 1.08994 * 109.46955 * 60.00145 * 18 17 15 45 45 H 1.08000 * 126.34470 * 179.97438 * 24 23 22 46 46 H 0.96998 * 126.97926 * 0.04544 * 25 21 19 47 47 H 1.08999 * 109.46891 * 60.00145 * 26 19 18 48 48 H 1.08998 * 109.47402 * 179.97438 * 26 19 18 49 49 H 1.08991 * 109.47539 * 179.97438 * 27 26 19 50 50 H 1.09002 * 109.47103 * 300.00450 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1936 0.0000 4 6 3.5820 1.1954 0.0005 5 6 4.3305 2.5034 -0.0001 6 6 4.2813 0.0018 0.0019 7 6 5.7882 0.0133 0.0031 8 8 6.2630 0.3647 -1.2981 9 14 6.4218 -1.6782 0.4593 10 6 3.6021 -1.1992 0.0072 11 6 2.2065 -1.2080 0.0009 12 6 1.4721 -2.4912 0.0014 13 8 0.2617 -2.4986 0.1112 14 7 2.1450 -3.6527 -0.1200 15 6 1.4172 -4.9242 -0.1200 16 1 0.4570 -4.7932 -0.6188 17 6 2.2374 -5.9812 -0.8623 18 6 1.4771 -7.3090 -0.8629 19 6 1.2443 -7.7639 0.5792 20 1 2.2044 -7.8953 1.0783 21 6 0.4960 -9.0721 0.5786 22 7 0.6470 -10.0501 1.4296 23 7 -0.1529 -11.0115 1.1306 24 6 -0.8510 -10.6904 0.0755 25 7 -0.4626 -9.4484 -0.3020 26 6 0.4241 -6.7069 1.3214 27 6 1.1843 -5.3792 1.3221 28 1 -0.3633 -0.1167 1.0210 29 1 -0.3634 0.9425 -0.4095 30 1 -0.3634 -0.8259 -0.6117 31 1 1.6582 2.1290 -0.0004 32 1 4.5106 2.8193 1.0275 33 1 5.2836 2.3764 -0.5134 34 1 3.7387 3.2605 -0.5145 35 1 6.1455 0.7433 0.7295 36 1 5.9828 -0.2428 -1.9964 37 1 7.9068 -1.6803 0.4635 38 1 5.9091 -2.0688 1.7971 39 1 4.1491 -2.1304 0.0120 40 1 3.1110 -3.6468 -0.2073 41 1 3.1977 -6.1122 -0.3634 42 1 2.4030 -5.6572 -1.8897 43 1 2.0617 -8.0621 -1.3913 44 1 0.5171 -7.1776 -1.3619 45 1 -1.6013 -11.3003 -0.4055 46 1 -0.8006 -8.9340 -1.0516 47 1 -0.5360 -6.5757 0.8224 48 1 0.2579 -7.0313 2.3487 49 1 0.5999 -4.6261 1.8504 50 1 2.1445 -5.5106 1.8211 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16624780_9599494.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:37:43 Heat of formation + Delta-G solvation = 22.581820 kcal Electronic energy + Delta-G solvation = -31852.214764 eV Core-core repulsion = 27653.432543 eV Total energy + Delta-G solvation = -4198.782221 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -44.12826 -41.73598 -40.41624 -39.18068 -37.58847 -35.86673 -34.61820 -34.36466 -33.54430 -32.19734 -31.82822 -29.94190 -29.06298 -28.29656 -25.63303 -24.76610 -23.90864 -23.71117 -23.37617 -22.40705 -21.75707 -21.31203 -20.61570 -19.28315 -18.96714 -17.68426 -17.44879 -16.87806 -16.71007 -16.49679 -16.32729 -16.19529 -16.04426 -15.78453 -15.52347 -15.14717 -14.98560 -14.88307 -14.60926 -14.51863 -14.17406 -14.00763 -13.90703 -13.63207 -13.35005 -13.23020 -13.05644 -12.88854 -12.75225 -12.61523 -12.50496 -12.36042 -12.22985 -12.15334 -12.13676 -11.86868 -11.81222 -11.61212 -11.39852 -11.29421 -10.67111 -10.40757 -10.24148 -10.10878 -9.88512 -9.58795 -5.06958 -0.23687 0.18270 0.87804 1.29411 1.63695 1.78234 1.86633 1.91580 1.98767 2.10394 2.66800 3.19870 3.47747 3.53136 3.59185 3.64988 3.70197 3.74407 3.82468 3.94498 4.00573 4.14278 4.17820 4.22614 4.26651 4.34718 4.38864 4.44789 4.45778 4.47773 4.52339 4.54322 4.57342 4.67806 4.70627 4.75580 4.80152 4.84950 4.90937 5.03751 5.04565 5.05808 5.08034 5.14132 5.15774 5.19576 5.25170 5.31998 5.34977 5.48899 5.50982 5.57633 5.81092 6.27176 6.52961 6.79639 7.21357 7.72689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.027 4.027 3 C -0.139 4.139 4 C -0.034 4.034 5 C -0.127 4.127 6 C -0.140 4.140 7 C -0.070 4.070 8 O -0.550 6.550 9 Si 0.767 3.233 10 C -0.063 4.063 11 C -0.158 4.158 12 C 0.559 3.441 13 O -0.561 6.561 14 N -0.711 5.711 15 C 0.147 3.853 16 H 0.077 0.923 17 C -0.118 4.118 18 C -0.108 4.108 19 C 0.002 3.998 20 H 0.108 0.892 21 C 0.193 3.807 22 N -0.346 5.346 23 N -0.356 5.356 24 C 0.169 3.831 25 N -0.568 5.568 26 C -0.100 4.100 27 C -0.124 4.124 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.142 0.858 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.108 0.892 36 H 0.396 0.604 37 H -0.297 1.297 38 H -0.284 1.284 39 H 0.155 0.845 40 H 0.413 0.587 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.077 0.923 45 H 0.261 0.739 46 H 0.446 0.554 47 H 0.066 0.934 48 H 0.058 0.942 49 H 0.050 0.950 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.197 1.699 -7.673 7.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.028 4.028 3 C -0.157 4.157 4 C -0.034 4.034 5 C -0.184 4.184 6 C -0.140 4.140 7 C -0.179 4.179 8 O -0.358 6.358 9 Si 0.673 3.327 10 C -0.081 4.081 11 C -0.161 4.161 12 C 0.347 3.653 13 O -0.442 6.442 14 N -0.363 5.363 15 C 0.043 3.957 16 H 0.096 0.904 17 C -0.156 4.156 18 C -0.147 4.147 19 C -0.019 4.019 20 H 0.126 0.874 21 C -0.078 4.078 22 N -0.186 5.186 23 N -0.195 5.195 24 C -0.122 4.122 25 N -0.182 5.182 26 C -0.139 4.139 27 C -0.162 4.162 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.159 0.841 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.125 0.875 36 H 0.246 0.754 37 H -0.225 1.225 38 H -0.210 1.210 39 H 0.172 0.828 40 H 0.251 0.749 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.104 0.896 44 H 0.096 0.904 45 H 0.277 0.723 46 H 0.290 0.710 47 H 0.085 0.915 48 H 0.076 0.924 49 H 0.069 0.931 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.642 0.764 -5.414 5.709 hybrid contribution -0.711 1.511 -0.739 1.826 sum 0.931 2.275 -6.153 6.626 Atomic orbital electron populations 1.21019 0.90162 1.03264 1.02949 1.20217 0.96951 0.92046 0.93569 1.21175 0.93696 0.98054 1.02728 1.20217 0.93479 0.95942 0.93761 1.21003 1.01015 0.93238 1.03104 1.20192 0.96547 0.92841 1.04432 1.25119 0.91062 1.12364 0.89395 1.86478 1.75945 1.56798 1.16557 0.94207 0.77519 0.78053 0.82915 1.21186 0.92384 0.97842 0.96677 1.19714 0.93784 0.92974 1.09593 1.18358 0.86769 0.84356 0.75780 1.90736 1.15080 1.87548 1.50793 1.45888 1.11554 1.04965 1.73901 1.21044 0.96619 0.82325 0.95755 0.90444 1.21769 0.99321 0.92390 1.02125 1.21572 1.02117 0.97582 0.93383 1.19850 0.98059 0.84662 0.99308 0.87372 1.25226 0.93518 0.99364 0.89700 1.74184 1.20566 0.99556 1.24306 1.74188 1.08009 1.22537 1.14751 1.27291 1.02380 0.86525 0.95984 1.44068 1.30874 1.16048 1.27217 1.21434 0.98617 0.93462 1.00426 1.21855 1.01292 0.95899 0.97200 0.91489 0.91068 0.89971 0.84066 0.90347 0.90081 0.90437 0.87484 0.75429 1.22492 1.21022 0.82821 0.74881 0.88945 0.88800 0.89640 0.90436 0.72313 0.71022 0.91513 0.92362 0.93096 0.90218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.41 8.74 71.24 0.62 0.21 16 2 C -0.03 -0.07 5.91 -19.61 -0.12 -0.19 16 3 C -0.14 -0.09 9.31 22.23 0.21 0.12 16 4 C -0.03 0.01 5.89 -19.81 -0.12 -0.11 16 5 C -0.13 0.29 9.31 71.24 0.66 0.95 16 6 C -0.14 0.33 5.26 -19.90 -0.10 0.23 16 7 C -0.07 0.26 1.88 71.24 0.13 0.40 16 8 O -0.55 2.05 11.92 -148.98 -1.78 0.27 16 9 Si 0.77 -4.43 29.91 68.60 2.05 -2.37 16 10 C -0.06 0.25 8.13 22.53 0.18 0.44 16 11 C -0.16 -0.12 5.87 -20.09 -0.12 -0.24 16 12 C 0.56 0.97 7.67 86.79 0.67 1.64 16 13 O -0.56 -4.82 13.00 -3.86 -0.05 -4.87 16 14 N -0.71 4.00 5.03 -445.40 -2.24 1.76 16 15 C 0.15 -0.92 2.45 44.99 0.11 -0.81 16 16 H 0.08 -0.20 7.58 -2.39 -0.02 -0.22 16 17 C -0.12 1.42 5.39 30.60 0.16 1.59 16 18 C -0.11 1.17 4.98 30.60 0.15 1.32 16 19 C 0.00 -0.01 2.66 -11.54 -0.03 -0.04 16 20 H 0.11 -0.48 8.14 -2.39 -0.02 -0.50 16 21 C 0.19 0.19 6.99 137.98 0.96 1.15 16 22 N -0.35 -3.72 12.21 -50.15 -0.61 -4.33 16 23 N -0.36 -3.64 12.21 -59.99 -0.73 -4.37 16 24 C 0.17 -0.18 13.19 180.11 2.38 2.19 16 25 N -0.57 2.78 5.96 -189.85 -1.13 1.65 16 26 C -0.10 0.33 5.19 30.59 0.16 0.49 16 27 C -0.12 0.45 5.50 30.59 0.17 0.62 16 28 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.07 0.02 8.04 -2.39 -0.02 0.01 16 30 H 0.08 0.55 5.85 -2.38 -0.01 0.53 16 31 H 0.14 -0.30 8.06 -2.91 -0.02 -0.33 16 32 H 0.08 -0.25 8.14 -2.39 -0.02 -0.27 16 33 H 0.08 -0.09 6.18 -2.39 -0.01 -0.10 16 34 H 0.08 -0.28 8.08 -2.39 -0.02 -0.30 16 35 H 0.11 -0.24 7.38 -2.38 -0.02 -0.26 16 36 H 0.40 -4.66 8.70 -74.06 -0.64 -5.30 16 37 H -0.30 -0.67 7.11 99.48 0.71 0.03 16 38 H -0.28 0.14 7.11 99.48 0.71 0.85 16 39 H 0.15 -1.68 3.51 -2.91 -0.01 -1.69 16 40 H 0.41 -4.89 6.68 -92.71 -0.62 -5.51 16 41 H 0.09 -1.32 8.14 -2.39 -0.02 -1.33 16 42 H 0.09 -1.30 8.14 -2.39 -0.02 -1.32 16 43 H 0.08 -0.96 8.14 -2.39 -0.02 -0.98 16 44 H 0.08 -0.99 7.52 -2.39 -0.02 -1.01 16 45 H 0.26 -2.86 8.06 -2.91 -0.02 -2.88 16 46 H 0.45 -5.71 8.29 -92.71 -0.77 -6.48 16 47 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 48 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 49 H 0.05 0.10 8.14 -2.39 -0.02 0.08 16 50 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 Total: 0.00 -30.24 394.09 0.60 -29.64 By element: Atomic # 1 Polarization: -26.35 SS G_CDS: -0.99 Total: -27.34 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: 6.08 Total: 9.97 kcal Atomic # 7 Polarization: -0.58 SS G_CDS: -4.72 Total: -5.30 kcal Atomic # 8 Polarization: -2.77 SS G_CDS: -1.83 Total: -4.59 kcal Atomic # 14 Polarization: -4.43 SS G_CDS: 2.05 Total: -2.37 kcal Total: -30.24 0.60 -29.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16624780_9599494.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.219 kcal (2) G-P(sol) polarization free energy of solvation -30.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds