Wall clock time and date at job start Sun Mar 7 2021 05:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86295 * 109.47242 * 2 1 4 4 C 1.50704 * 109.47078 * 239.99914 * 2 1 3 5 5 C 1.34239 * 126.49967 * 104.97709 * 4 2 1 6 6 N 1.36834 * 109.94055 * 180.02562 * 5 4 2 7 7 C 1.46496 * 125.06306 * 179.97438 * 6 5 4 8 8 C 1.50707 * 109.46882 * 265.02194 * 7 6 5 9 9 O 1.21284 * 119.99933 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00104 * 180.02562 * 8 7 6 11 11 C 1.46503 * 120.00228 * 179.97438 * 10 8 7 12 12 H 1.09004 * 109.47013 * 34.99655 * 11 10 8 13 13 C 1.52994 * 109.47370 * 154.99921 * 11 10 8 14 14 C 1.53005 * 109.47181 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47004 * 299.99886 * 14 13 11 16 16 H 1.09006 * 109.47265 * 300.00712 * 15 14 13 17 17 C 1.50693 * 109.47445 * 180.02562 * 15 14 13 18 18 N 1.30520 * 126.34765 * 94.95345 * 17 15 14 19 19 N 1.28595 * 109.67181 * 180.02562 * 18 17 15 20 20 C 1.30528 * 109.67405 * 0.02562 * 19 18 17 21 21 N 1.35492 * 107.30462 * 359.97438 * 20 19 18 22 22 C 1.53006 * 109.47143 * 59.99807 * 15 14 13 23 23 C 1.52997 * 109.46805 * 275.00209 * 11 10 8 24 24 C 1.37688 * 109.87134 * 0.22395 * 6 5 4 25 25 C 1.39086 * 133.50933 * 180.39265 * 24 6 5 26 26 C 1.37786 * 119.77994 * 179.65252 * 25 24 6 27 27 C 1.38785 * 120.66745 * 359.75924 * 26 25 24 28 28 C 1.36671 * 120.52751 * 359.97438 * 27 26 25 29 29 C 1.39585 * 119.76126 * 0.02562 * 28 27 26 30 30 H 0.96694 * 114.00412 * 300.00255 * 1 2 3 31 31 H 1.08998 * 109.47520 * 120.00220 * 2 1 3 32 32 H 1.48496 * 110.00217 * 178.67942 * 3 2 1 33 33 H 1.48500 * 110.00043 * 300.00155 * 3 2 1 34 34 H 1.08003 * 125.02946 * 0.02562 * 5 4 2 35 35 H 1.08998 * 109.47320 * 145.02470 * 7 6 5 36 36 H 1.09005 * 109.47494 * 25.01653 * 7 6 5 37 37 H 0.97000 * 120.00242 * 359.97438 * 10 8 7 38 38 H 1.08996 * 109.47200 * 60.00145 * 13 11 10 39 39 H 1.09001 * 109.47305 * 300.00043 * 13 11 10 40 40 H 1.08998 * 109.46961 * 180.02562 * 14 13 11 41 41 H 1.08996 * 109.47106 * 59.99878 * 14 13 11 42 42 H 1.07996 * 126.34178 * 180.02562 * 20 19 18 43 43 H 0.96999 * 126.97720 * 180.26318 * 21 20 19 44 44 H 1.08996 * 109.46969 * 60.00007 * 22 15 14 45 45 H 1.08999 * 109.47183 * 180.02562 * 22 15 14 46 46 H 1.08996 * 109.47125 * 299.99462 * 23 11 10 47 47 H 1.08999 * 109.47583 * 59.99494 * 23 11 10 48 48 H 1.08010 * 120.10793 * 359.41294 * 25 24 6 49 49 H 1.08003 * 119.66583 * 179.73791 * 26 25 24 50 50 H 1.07998 * 119.74168 * 180.02562 * 27 26 25 51 51 H 1.07990 * 120.11616 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.4604 -0.1376 -2.3232 6 7 2.8020 -1.0989 -3.2350 7 6 3.4058 -0.8402 -4.5445 8 6 2.3252 -0.7836 -5.5935 9 8 1.1651 -0.9441 -5.2783 10 7 2.6481 -0.5557 -6.8819 11 6 1.5978 -0.5012 -7.9018 12 1 0.6999 -0.0540 -7.4751 13 6 2.0771 0.3449 -9.0829 14 6 0.9798 0.4023 -10.1477 15 6 0.6632 -1.0145 -10.6306 16 1 1.5608 -1.4621 -11.0574 17 6 -0.4171 -0.9581 -11.6798 18 7 -0.2391 -0.9282 -12.9724 19 7 -1.3793 -0.8818 -13.5654 20 6 -2.3364 -0.8794 -12.6779 21 7 -1.7531 -0.9280 -11.4559 22 6 0.1839 -1.8607 -9.4493 23 6 1.2817 -1.9182 -8.3844 24 6 2.4887 -2.3453 -2.7408 25 6 2.6278 -3.6360 -3.2399 26 6 2.2140 -4.7106 -2.4832 27 6 1.6632 -4.5193 -1.2237 28 6 1.5222 -3.2601 -0.7116 29 6 1.9348 -2.1571 -1.4611 30 1 -0.3934 0.4417 0.7650 31 1 1.7924 -0.5138 0.8899 32 1 3.5345 1.7702 0.0322 33 1 1.5615 2.4679 -1.2085 34 1 2.5963 0.9248 -2.4620 35 1 4.1055 -1.6402 -4.7864 36 1 3.9368 0.1114 -4.5182 37 1 3.5760 -0.4277 -7.1341 38 1 2.9748 -0.1023 -9.5096 39 1 2.3023 1.3544 -8.7390 40 1 1.3215 1.0047 -10.9894 41 1 0.0823 0.8498 -9.7208 42 1 -3.3967 -0.8458 -12.8802 43 1 -2.2010 -0.9423 -10.5957 44 1 -0.7137 -1.4133 -9.0224 45 1 -0.0413 -2.8702 -9.7933 46 1 2.1794 -2.3654 -8.8111 47 1 0.9402 -2.5210 -7.5430 48 1 3.0552 -3.7952 -4.2189 49 1 2.3190 -5.7118 -2.8743 50 1 1.3443 -5.3724 -0.6433 51 1 1.0924 -3.1189 0.2689 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16624780_9818708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:37:47 Heat of formation + Delta-G solvation = 72.918671 kcal Electronic energy + Delta-G solvation = -34716.802324 eV Core-core repulsion = 30198.324681 eV Total energy + Delta-G solvation = -4518.477643 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 382.179 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -44.19757 -42.64122 -41.10911 -39.39931 -38.10568 -37.61183 -35.83806 -34.65385 -34.28084 -32.59742 -31.94960 -31.49007 -30.37780 -29.96449 -28.64504 -25.86997 -24.71430 -24.15406 -23.79904 -23.36215 -22.74375 -22.14714 -21.64110 -20.98765 -20.61139 -19.36061 -18.61123 -18.35940 -18.26334 -17.79750 -17.18043 -16.90387 -16.55014 -16.49089 -16.41815 -16.05555 -15.68874 -15.52339 -15.31913 -15.05769 -14.99533 -14.88335 -14.76242 -14.50751 -14.19000 -14.14716 -13.85284 -13.62995 -13.39677 -13.28652 -12.89971 -12.76620 -12.65019 -12.52248 -12.47971 -12.35775 -12.27454 -12.05041 -11.89105 -11.81165 -11.74687 -11.58196 -11.38857 -11.16742 -10.63350 -10.30944 -10.21088 -10.17914 -9.25899 -8.73405 -4.95906 0.04080 0.56958 0.80653 1.24846 1.33545 1.36924 1.57751 1.69914 1.79814 1.84252 1.97747 2.09138 2.87742 3.10447 3.42492 3.46791 3.52073 3.58847 3.63213 3.68092 3.78620 3.81495 3.92832 3.97966 4.01342 4.05686 4.14149 4.17757 4.22514 4.24857 4.25066 4.33216 4.34879 4.37763 4.45139 4.51543 4.58228 4.61450 4.70927 4.72211 4.83485 4.93380 4.93597 4.98270 5.00620 5.07111 5.10268 5.18514 5.22094 5.38592 5.44126 5.58488 5.65252 5.66147 6.05040 6.15588 6.17310 6.39935 6.98772 7.06657 7.65444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.571 6.571 2 C -0.051 4.051 3 Si 0.787 3.213 4 C -0.181 4.181 5 C 0.053 3.947 6 N -0.467 5.467 7 C 0.084 3.916 8 C 0.492 3.508 9 O -0.569 6.569 10 N -0.707 5.707 11 C 0.147 3.853 12 H 0.065 0.935 13 C -0.114 4.114 14 C -0.103 4.103 15 C 0.004 3.996 16 H 0.111 0.889 17 C 0.191 3.809 18 N -0.341 5.341 19 N -0.353 5.353 20 C 0.169 3.831 21 N -0.571 5.571 22 C -0.108 4.108 23 C -0.120 4.120 24 C 0.091 3.909 25 C -0.135 4.135 26 C -0.102 4.102 27 C -0.152 4.152 28 C -0.082 4.082 29 C -0.120 4.120 30 H 0.398 0.602 31 H 0.079 0.921 32 H -0.283 1.283 33 H -0.293 1.293 34 H 0.174 0.826 35 H 0.148 0.852 36 H 0.155 0.845 37 H 0.421 0.579 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.261 0.739 43 H 0.444 0.556 44 H 0.068 0.932 45 H 0.072 0.928 46 H 0.085 0.915 47 H 0.051 0.949 48 H 0.134 0.866 49 H 0.150 0.850 50 H 0.143 0.857 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.196 2.381 4.780 6.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.380 6.380 2 C -0.160 4.160 3 Si 0.691 3.309 4 C -0.189 4.189 5 C -0.072 4.072 6 N -0.150 5.150 7 C -0.040 4.040 8 C 0.277 3.723 9 O -0.447 6.447 10 N -0.360 5.360 11 C 0.042 3.958 12 H 0.084 0.916 13 C -0.152 4.152 14 C -0.142 4.142 15 C -0.017 4.017 16 H 0.129 0.871 17 C -0.080 4.080 18 N -0.181 5.181 19 N -0.192 5.192 20 C -0.121 4.121 21 N -0.185 5.185 22 C -0.147 4.147 23 C -0.158 4.158 24 C -0.014 4.014 25 C -0.156 4.156 26 C -0.121 4.121 27 C -0.171 4.171 28 C -0.101 4.101 29 C -0.124 4.124 30 H 0.249 0.751 31 H 0.097 0.903 32 H -0.209 1.209 33 H -0.221 1.221 34 H 0.191 0.809 35 H 0.166 0.834 36 H 0.172 0.828 37 H 0.259 0.741 38 H 0.112 0.888 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.277 0.723 43 H 0.287 0.713 44 H 0.087 0.913 45 H 0.091 0.909 46 H 0.103 0.897 47 H 0.069 0.931 48 H 0.152 0.848 49 H 0.167 0.833 50 H 0.161 0.839 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.846 2.652 2.216 5.171 hybrid contribution -0.919 -0.546 0.994 1.460 sum 2.928 2.106 3.210 4.828 Atomic orbital electron populations 1.86507 1.18175 1.82403 1.50911 1.24326 0.85061 1.11046 0.95594 0.94118 0.77451 0.74096 0.85207 1.20051 1.09184 0.91948 0.97672 1.21703 1.01906 0.94275 0.89328 1.43374 1.53444 1.03877 1.14265 1.22005 0.94194 1.08849 0.78955 1.21329 0.90290 0.76136 0.84514 1.90808 1.22217 1.49934 1.81764 1.45871 1.12040 1.72297 1.05782 1.20986 0.90931 0.96011 0.87859 0.91650 1.21728 0.99191 1.00834 0.93451 1.21483 0.99531 0.94398 0.98776 1.19815 0.93613 0.98226 0.90020 0.87079 1.25204 0.85344 1.02468 0.95011 1.74185 1.19160 1.20624 1.04086 1.74196 0.95642 1.20426 1.28899 1.27297 1.02969 1.01743 0.80127 1.44114 1.07041 1.55725 1.11589 1.21538 0.98894 1.00214 0.94026 1.21806 0.99593 0.96651 0.97799 1.18472 1.01761 0.86904 0.94266 1.20258 1.05296 0.88804 1.01217 1.21188 0.97671 0.99007 0.94280 1.20977 1.02071 0.97074 0.96931 1.20493 0.98489 0.91353 0.99747 1.19354 1.04349 0.93468 0.95201 0.75140 0.90316 1.20919 1.22088 0.80863 0.83429 0.82788 0.74117 0.88765 0.89807 0.90736 0.91570 0.72324 0.71261 0.91286 0.90893 0.89658 0.93057 0.84799 0.83276 0.83924 0.85491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -2.98 12.86 -148.98 -1.92 -4.89 16 2 C -0.05 -0.20 3.05 71.24 0.22 0.02 16 3 Si 0.79 -0.92 30.79 68.60 2.11 1.19 16 4 C -0.18 -1.83 5.61 -18.62 -0.10 -1.93 16 5 C 0.05 0.41 9.89 83.00 0.82 1.23 16 6 N -0.47 -2.65 2.27 -519.98 -1.18 -3.83 16 7 C 0.08 -0.36 6.48 85.64 0.56 0.19 16 8 C 0.49 0.17 7.86 87.66 0.69 0.86 16 9 O -0.57 -6.94 16.08 -3.04 -0.05 -6.98 16 10 N -0.71 4.94 5.08 -442.53 -2.25 2.69 16 11 C 0.15 -0.76 2.45 44.99 0.11 -0.65 16 12 H 0.07 0.04 7.58 -2.38 -0.02 0.02 16 13 C -0.11 1.03 5.39 30.59 0.16 1.20 16 14 C -0.10 0.61 5.19 30.60 0.16 0.76 16 15 C 0.00 -0.02 2.66 -11.54 -0.03 -0.05 16 16 H 0.11 -0.44 8.14 -2.38 -0.02 -0.46 16 17 C 0.19 0.37 6.99 137.98 0.96 1.34 16 18 N -0.34 -3.71 12.21 -50.16 -0.61 -4.32 16 19 N -0.35 -3.74 12.21 -59.99 -0.73 -4.47 16 20 C 0.17 0.00 13.19 180.11 2.38 2.37 16 21 N -0.57 1.76 5.96 -189.87 -1.13 0.63 16 22 C -0.11 0.58 4.97 30.61 0.15 0.74 16 23 C -0.12 0.56 5.50 30.61 0.17 0.73 16 24 C 0.09 0.87 6.80 39.03 0.27 1.14 16 25 C -0.14 -0.81 10.00 22.37 0.22 -0.59 16 26 C -0.10 -0.48 10.01 22.29 0.22 -0.25 16 27 C -0.15 -0.90 9.97 22.03 0.22 -0.68 16 28 C -0.08 -0.77 10.05 22.23 0.22 -0.55 16 29 C -0.12 -1.44 6.35 -20.20 -0.13 -1.57 16 30 H 0.40 -2.52 8.74 -74.06 -0.65 -3.16 16 31 H 0.08 0.07 7.96 -2.39 -0.02 0.05 16 32 H -0.28 -0.85 7.11 99.48 0.71 -0.15 16 33 H -0.29 -1.49 7.04 99.48 0.70 -0.79 16 34 H 0.17 0.61 6.30 -2.91 -0.02 0.60 16 35 H 0.15 -1.51 8.14 -2.39 -0.02 -1.53 16 36 H 0.15 -1.75 8.12 -2.38 -0.02 -1.77 16 37 H 0.42 -6.02 8.60 -92.71 -0.80 -6.82 16 38 H 0.09 -1.11 8.14 -2.39 -0.02 -1.13 16 39 H 0.08 -0.80 8.14 -2.39 -0.02 -0.82 16 40 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 41 H 0.07 -0.36 8.14 -2.39 -0.02 -0.38 16 42 H 0.26 -2.55 8.06 -2.91 -0.02 -2.58 16 43 H 0.44 -4.40 8.28 -92.71 -0.77 -5.17 16 44 H 0.07 -0.42 7.52 -2.39 -0.02 -0.44 16 45 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 46 H 0.08 -0.60 8.14 -2.39 -0.02 -0.62 16 47 H 0.05 0.05 8.14 -2.39 -0.02 0.03 16 48 H 0.13 0.12 8.06 -2.91 -0.02 0.10 16 49 H 0.15 -0.15 8.06 -2.91 -0.02 -0.18 16 50 H 0.14 0.14 8.06 -2.91 -0.02 0.12 16 51 H 0.13 0.86 8.06 -2.92 -0.02 0.84 16 Total: 0.00 -40.91 420.69 0.32 -40.59 By element: Atomic # 1 Polarization: -23.70 SS G_CDS: -1.19 Total: -24.89 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: 7.27 Total: 4.30 kcal Atomic # 7 Polarization: -3.40 SS G_CDS: -5.90 Total: -9.31 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: -1.96 Total: -11.88 kcal Atomic # 14 Polarization: -0.92 SS G_CDS: 2.11 Total: 1.19 kcal Total: -40.91 0.32 -40.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16624780_9818708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.506 kcal (2) G-P(sol) polarization free energy of solvation -40.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds